RNA–Protein interactions for RNA: ENST00000589349.5

DNMT1-219, Transcript of DNA methyltransferase 1, humanhuman

TSL 4

Gene DNMT1, Length 603 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT1-219ENST00000589349 MAP3K7O43318 606 aa13.66□□□□□ -0.22
DNMT1-219ENST00000589349 RBM33Q96EV2 1170 aaKnown RBP13.66□□□□□ -0.22
DNMT1-219ENST00000589349 KCNK17Q96T54 332 aa13.65□□□□□ -0.22
DNMT1-219ENST00000589349 TNIKQ9UKE5 1360 aa13.65□□□□□ -0.22
DNMT1-219ENST00000589349 IQGAP2Q13576 1575 aa13.65□□□□□ -0.22
DNMT1-219ENST00000589349 C6orf132Q5T0Z8 1188 aa13.62□□□□□ -0.23
DNMT1-219ENST00000589349 POTEEQ6S8J3 1075 aa13.62□□□□□ -0.23
DNMT1-219ENST00000589349 AXIN2Q9Y2T1 843 aa13.62□□□□□ -0.23
DNMT1-219ENST00000589349 KRTAP3-3Q9BYR6 98 aa13.61□□□□□ -0.23
DNMT1-219ENST00000589349 KRTAP3-2Q9BYR7 98 aa13.61□□□□□ -0.23
DNMT1-219ENST00000589349 PSEN2P49810 448 aa13.6□□□□□ -0.23
DNMT1-219ENST00000589349 PPP1R3GB7ZBB8 358 aa13.59□□□□□ -0.23
DNMT1-219ENST00000589349 LSM11P83369 360 aaKnown RBP eCLIP13.59□□□□□ -0.23
DNMT1-219ENST00000589349 PRIM1P49642 420 aaKnown RBP13.58□□□□□ -0.24
DNMT1-219ENST00000589349 ADCY10Q96PN6 1610 aa13.57□□□□□ -0.24
DNMT1-219ENST00000589349 TSR1Q2NL82 804 aaKnown RBP13.57□□□□□ -0.24
DNMT1-219ENST00000589349 BCANQ96GW7 911 aa13.57□□□□□ -0.24
DNMT1-219ENST00000589349 ARID3CA6NKF2 412 aa13.56□□□□□ -0.24
DNMT1-219ENST00000589349 CERKQ8TCT0 537 aa13.56□□□□□ -0.24
DNMT1-219ENST00000589349 UACAQ9BZF9 1416 aa13.55□□□□□ -0.24
DNMT1-219ENST00000589349 DMRTA1Q5VZB9 504 aa13.54□□□□□ -0.24
DNMT1-219ENST00000589349 DISP1Q96F81 1524 aa13.54□□□□□ -0.24
DNMT1-219ENST00000589349 ANKRD13DQ6ZTN6 518 aa13.53□□□□□ -0.24
DNMT1-219ENST00000589349 SLC4A5Q9BY07 1137 aa13.53□□□□□ -0.24
DNMT1-219ENST00000589349 GOLGA3Q08378 1498 aa13.53□□□□□ -0.24
DNMT1-219ENST00000589349 PRXQ9BXM0 1461 aa13.53□□□□□ -0.24
DNMT1-219ENST00000589349 NUTM2FA1L443 756 aa13.52□□□□□ -0.25
DNMT1-219ENST00000589349 TK2O00142 265 aa13.52□□□□□ -0.25
DNMT1-219ENST00000589349 COL9A1P20849 921 aa13.52□□□□□ -0.25
DNMT1-219ENST00000589349 ABCC10Q5T3U5 1492 aa13.52□□□□□ -0.25
DNMT1-219ENST00000589349 UGGT2Q9NYU1 1516 aa13.52□□□□□ -0.25
DNMT1-219ENST00000589349 UBTFP17480 764 aaKnown RBP13.51□□□□□ -0.25
DNMT1-219ENST00000589349 RBM26Q5T8P6 1007 aaKnown RBP13.51□□□□□ -0.25
DNMT1-219ENST00000589349 CDHR5Q9HBB8 845 aa13.51□□□□□ -0.25
DNMT1-219ENST00000589349 ABCC2Q92887 1545 aa13.5□□□□□ -0.25
DNMT1-219ENST00000589349 ZBED2Q9BTP6 218 aa13.5□□□□□ -0.25
DNMT1-219ENST00000589349 CTTNBP2Q8WZ74 1663 aa13.5□□□□□ -0.25
DNMT1-219ENST00000589349 KIAA0556O60303 1618 aa13.5□□□□□ -0.25
DNMT1-219ENST00000589349 MAPKBP1O60336 1514 aa13.49□□□□□ -0.25
DNMT1-219ENST00000589349 EEA1Q15075 1411 aa13.49□□□□□ -0.25
DNMT1-219ENST00000589349 ASXL2Q76L83 1435 aa13.48□□□□□ -0.25
DNMT1-219ENST00000589349 ADGRD1Q6QNK2 874 aa13.48□□□□□ -0.25
DNMT1-219ENST00000589349 KIF13AQ9H1H9 1805 aa13.47□□□□□ -0.25
DNMT1-219ENST00000589349 PLB1Q6P1J6 1458 aa13.47□□□□□ -0.25
DNMT1-219ENST00000589349 TSPOAP1O95153 1857 aa13.46□□□□□ -0.25
DNMT1-219ENST00000589349 FCHSD2O94868 740 aa13.46□□□□□ -0.25
DNMT1-219ENST00000589349 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.46□□□□□ -0.25
DNMT1-219ENST00000589349 VPS9D1Q9Y2B5 631 aa13.46□□□□□ -0.25
DNMT1-219ENST00000589349 UHRF1BP1LA0JNW5 1464 aa13.45□□□□□ -0.26
DNMT1-219ENST00000589349 ONECUT3O60422 494 aaPredicted RBP13.45□□□□□ -0.26
DNMT1-219ENST00000589349 PTGDRQ13258 359 aa13.45□□□□□ -0.26
DNMT1-219ENST00000589349 GPIHBP1Q8IV16 184 aa13.45□□□□□ -0.26
DNMT1-219ENST00000589349 RBM27Q9P2N5 1060 aaKnown RBP13.45□□□□□ -0.26
DNMT1-219ENST00000589349 DIP2BQ9P265 1576 aa13.45□□□□□ -0.26
DNMT1-219ENST00000589349 NPDC1Q9NQX5 325 aaPredicted RBP13.44□□□□□ -0.26
DNMT1-219ENST00000589349 ATP1B4Q9UN42 357 aaPredicted RBP13.44□□□□□ -0.26
DNMT1-219ENST00000589349 TRIM6-TRIM34B2RNG4 842 aa13.43□□□□□ -0.26
DNMT1-219ENST00000589349 PRSS12P56730 875 aa13.43□□□□□ -0.26
DNMT1-219ENST00000589349 LMOD2Q6P5Q4 547 aa13.43□□□□□ -0.26
DNMT1-219ENST00000589349 CDCA7LQ96GN5 454 aa13.43□□□□□ -0.26
DNMT1-219ENST00000589349 PROX2Q3B8N5 592 aa13.42□□□□□ -0.26
DNMT1-219ENST00000589349 STAC3Q96MF2 364 aa13.41□□□□□ -0.26
DNMT1-219ENST00000589349 RABGEF1Q9UJ41 708 aa13.41□□□□□ -0.26
DNMT1-219ENST00000589349 NBPF3Q9H094 633 aa13.4□□□□□ -0.26
DNMT1-219ENST00000589349 ZCCHC11Q5TAX3 1644 aaKnown RBP13.39□□□□□ -0.27
DNMT1-219ENST00000589349 HIC1Q14526 733 aa13.39□□□□□ -0.27
DNMT1-219ENST00000589349 PACS2Q86VP3 889 aa13.39□□□□□ -0.27
DNMT1-219ENST00000589349 KDM5BQ9UGL1 1544 aa13.39□□□□□ -0.27
DNMT1-219ENST00000589349 HRO43593 1189 aa13.38□□□□□ -0.27
DNMT1-219ENST00000589349 PADI6Q6TGC4 694 aa13.37□□□□□ -0.27
DNMT1-219ENST00000589349 SPNS2Q8IVW8 549 aa13.37□□□□□ -0.27
DNMT1-219ENST00000589349 KIAA1468Q9P260 1216 aa13.37□□□□□ -0.27
DNMT1-219ENST00000589349 KDM6BO15054 1643 aa13.37□□□□□ -0.27
DNMT1-219ENST00000589349 EPRSP07814 1512 aaKnown RBP13.36□□□□□ -0.27
DNMT1-219ENST00000589349 TSKSQ9UJT2 592 aa13.36□□□□□ -0.27
DNMT1-219ENST00000589349 FHOD3Q2V2M9 1422 aa13.36□□□□□ -0.27
DNMT1-219ENST00000589349 WDR7Q9Y4E6 1490 aa13.36□□□□□ -0.27
DNMT1-219ENST00000589349 GNPATO15228 680 aa13.35□□□□□ -0.27
DNMT1-219ENST00000589349 ABCA8O94911 1581 aa13.34□□□□□ -0.27
DNMT1-219ENST00000589349 NBPF26B4DH59 902 aa13.34□□□□□ -0.27
DNMT1-219ENST00000589349 BHMG1C9JSJ3 638 aaPredicted RBP13.34□□□□□ -0.27
DNMT1-219ENST00000589349 GPR37O15354 613 aa13.34□□□□□ -0.27
DNMT1-219ENST00000589349 TTC13Q8NBP0 860 aa13.34□□□□□ -0.27
DNMT1-219ENST00000589349 MRPL50Q8N5N7 158 aaKnown RBP13.33□□□□□ -0.28
DNMT1-219ENST00000589349 CD109Q6YHK3 1445 aa13.32□□□□□ -0.28
DNMT1-219ENST00000589349 TEX14Q8IWB6 1497 aa13.32□□□□□ -0.28
DNMT1-219ENST00000589349 PLEKHD1A6NEE1 506 aa13.32□□□□□ -0.28
DNMT1-219ENST00000589349 KIF21BO75037 1637 aa13.31□□□□□ -0.28
DNMT1-219ENST00000589349 LAPTM4BQ86VI4 370 aa13.31□□□□□ -0.28
DNMT1-219ENST00000589349 MYT1LQ9UL68 1186 aa13.31□□□□□ -0.28
DNMT1-219ENST00000589349 GLI2P10070 1586 aa13.31□□□□□ -0.28
DNMT1-219ENST00000589349 FAM198AQ9UFP1 575 aa13.3□□□□□ -0.28
DNMT1-219ENST00000589349 ATP10BO94823 1461 aa13.29□□□□□ -0.28
DNMT1-219ENST00000589349 SAMD9Q5K651 1589 aa13.28□□□□□ -0.28
DNMT1-219ENST00000589349 GOLGA8CPA6NN73 597 aa13.28□□□□□ -0.28
DNMT1-219ENST00000589349 TATDN2Q93075 761 aa13.28□□□□□ -0.28
DNMT1-219ENST00000589349 PNMA3Q9UL41 463 aa13.28□□□□□ -0.28
DNMT1-219ENST00000589349 RAPGEF6Q8TEU7 1601 aa13.28□□□□□ -0.28
DNMT1-219ENST00000589349 FAM98CQ17RN3 349 aaKnown RBP13.26□□□□□ -0.29
DNMT1-219ENST00000589349 NUDT18Q6ZVK8 323 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms