RNA–Protein interactions for RNA: ENST00000589091.1

DNMT1-217, Transcript of DNA methyltransferase 1, humanhuman

TSL 3

Gene DNMT1, Length 563 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT1-217ENST00000589091 NWD1Q149M9 1564 aa22.3■■□□□ 1.16
DNMT1-217ENST00000589091 PIP4K2BP78356 416 aa22.3■■□□□ 1.16
DNMT1-217ENST00000589091 NUP155O75694 1391 aa22.29■■□□□ 1.16
DNMT1-217ENST00000589091 ZFYVE9O95405 1425 aa22.29■■□□□ 1.16
DNMT1-217ENST00000589091 HDGFP51858 240 aaKnown RBP22.28■■□□□ 1.16
DNMT1-217ENST00000589091 RIMS2Q9UQ26 1411 aa22.26■■□□□ 1.15
DNMT1-217ENST00000589091 NKTRP30414 1462 aaKnown RBP22.25■■□□□ 1.15
DNMT1-217ENST00000589091 PLEKHG1Q9ULL1 1385 aa22.25■■□□□ 1.15
DNMT1-217ENST00000589091 KIF1BO60333 1816 aa22.23■■□□□ 1.15
DNMT1-217ENST00000589091 KCNA6P17658 529 aa22.23■■□□□ 1.15
DNMT1-217ENST00000589091 HSPA1LP34931 641 aa22.23■■□□□ 1.15
DNMT1-217ENST00000589091 DIP2AQ14689 1571 aa22.23■■□□□ 1.15
DNMT1-217ENST00000589091 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.22■■□□□ 1.15
DNMT1-217ENST00000589091 PPP1R15AO75807 674 aaPredicted RBP22.21■■□□□ 1.15
DNMT1-217ENST00000589091 BCANQ96GW7 911 aa22.21■■□□□ 1.15
DNMT1-217ENST00000589091 SLC26A8Q96RN1 970 aa22.21■■□□□ 1.15
DNMT1-217ENST00000589091 CHGAP10645 457 aaKnown RBP22.19■■□□□ 1.14
DNMT1-217ENST00000589091 MED1Q15648 1581 aaPredicted RBP22.18■■□□□ 1.14
DNMT1-217ENST00000589091 NAIPQ13075 1403 aa22.18■■□□□ 1.14
DNMT1-217ENST00000589091 TMEM94Q12767 1356 aa22.17■■□□□ 1.14
DNMT1-217ENST00000589091 PROSER2Q86WR7 435 aaPredicted RBP22.14■■□□□ 1.13
DNMT1-217ENST00000589091 TRPM2O94759 1503 aa22.14■■□□□ 1.13
DNMT1-217ENST00000589091 HFM1A2PYH4 1435 aa22.14■■□□□ 1.13
DNMT1-217ENST00000589091 CLTCL1P53675 1640 aa22.13■■□□□ 1.13
DNMT1-217ENST00000589091 TBX22Q9Y458 520 aa22.13■■□□□ 1.13
DNMT1-217ENST00000589091 ROBO1Q9Y6N7 1651 aa22.13■■□□□ 1.13
DNMT1-217ENST00000589091 ILDR2Q71H61 639 aa22.12■■□□□ 1.13
DNMT1-217ENST00000589091 ADAMTS13Q76LX8 1427 aa22.11■■□□□ 1.13
DNMT1-217ENST00000589091 PIK3R4Q99570 1358 aa22.11■■□□□ 1.13
DNMT1-217ENST00000589091 FAM135BQ49AJ0 1406 aa22.1■■□□□ 1.13
DNMT1-217ENST00000589091 NRXN3Q9Y4C0 1643 aa22.09■■□□□ 1.13
DNMT1-217ENST00000589091 MSH6P52701 1360 aa22.09■■□□□ 1.13
DNMT1-217ENST00000589091 SETBP1Q9Y6X0 1596 aa22.08■■□□□ 1.13
DNMT1-217ENST00000589091 NCOA3Q9Y6Q9 1424 aa22.08■■□□□ 1.13
DNMT1-217ENST00000589091 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.06■■□□□ 1.12
DNMT1-217ENST00000589091 NUTM2DQ5VT03 806 aaPredicted RBP22.05■■□□□ 1.12
DNMT1-217ENST00000589091 XRN1Q8IZH2 1706 aaKnown RBP22.05■■□□□ 1.12
DNMT1-217ENST00000589091 NEXMIFQ5QGS0 1516 aa22.05■■□□□ 1.12
DNMT1-217ENST00000589091 PHLPP1O60346 1717 aa22.03■■□□□ 1.12
DNMT1-217ENST00000589091 SOCS7O14512 581 aa22.03■■□□□ 1.12
DNMT1-217ENST00000589091 ZNF326Q5BKZ1 582 aaKnown RBP22.02■■□□□ 1.12
DNMT1-217ENST00000589091 TRIM52Q96A61 297 aa22.02■■□□□ 1.12
DNMT1-217ENST00000589091 RBM33Q96EV2 1170 aaKnown RBP22.02■■□□□ 1.12
DNMT1-217ENST00000589091 PPLO60437 1756 aa22.01■■□□□ 1.11
DNMT1-217ENST00000589091 SETD1AO15047 1707 aaKnown RBP21.97■■□□□ 1.11
DNMT1-217ENST00000589091 C14orf37Q86TY3 774 aa21.96■■□□□ 1.11
DNMT1-217ENST00000589091 SLC4A1APQ9BWU0 796 aaKnown RBP21.96■■□□□ 1.11
DNMT1-217ENST00000589091 PTPRUQ92729 1446 aa21.96■■□□□ 1.11
DNMT1-217ENST00000589091 SLAIN2Q9P270 581 aa21.95■■□□□ 1.1
DNMT1-217ENST00000589091 AMOTL2Q9Y2J4 779 aa21.95■■□□□ 1.1
DNMT1-217ENST00000589091 DCCP43146 1447 aa21.92■■□□□ 1.1
DNMT1-217ENST00000589091 CADPS2Q86UW7 1296 aa21.92■■□□□ 1.1
DNMT1-217ENST00000589091 C19orf44Q9H6X5 657 aa21.92■■□□□ 1.1
DNMT1-217ENST00000589091 COL16A1Q07092 1604 aaPredicted RBP21.91■■□□□ 1.1
DNMT1-217ENST00000589091 ACIN1Q9UKV3 1341 aaKnown RBP21.91■■□□□ 1.1
DNMT1-217ENST00000589091 IFT172Q9UG01 1749 aa21.91■■□□□ 1.1
DNMT1-217ENST00000589091 NALCNQ8IZF0 1738 aa21.9■■□□□ 1.1
DNMT1-217ENST00000589091 RPGRIP1LQ68CZ1 1315 aa21.89■■□□□ 1.1
DNMT1-217ENST00000589091 AHDC1Q5TGY3 1603 aaPredicted RBP21.89■■□□□ 1.09
DNMT1-217ENST00000589091 ATF3P18847 181 aa21.89■■□□□ 1.09
DNMT1-217ENST00000589091 VGFO15240 615 aaPredicted RBP21.88■■□□□ 1.09
DNMT1-217ENST00000589091 METP08581 1390 aa21.87■■□□□ 1.09
DNMT1-217ENST00000589091 SHPRHQ149N8 1683 aa21.86■■□□□ 1.09
DNMT1-217ENST00000589091 CCDC144AA2RUR9 1427 aa21.85■■□□□ 1.09
DNMT1-217ENST00000589091 JCADQ9P266 1359 aa21.84■■□□□ 1.09
DNMT1-217ENST00000589091 NHSL1Q5SYE7 1610 aa21.84■■□□□ 1.09
DNMT1-217ENST00000589091 ADGRL3Q9HAR2 1447 aa21.83■■□□□ 1.09
DNMT1-217ENST00000589091 PTCH1Q13635 1447 aa21.82■■□□□ 1.08
DNMT1-217ENST00000589091 PRAG1Q86YV5 1406 aa21.81■■□□□ 1.08
DNMT1-217ENST00000589091 MPHOSPH9Q99550 1183 aa21.81■■□□□ 1.08
DNMT1-217ENST00000589091 SETD5Q9C0A6 1442 aa21.8■■□□□ 1.08
DNMT1-217ENST00000589091 ASXL1Q8IXJ9 1541 aa21.79■■□□□ 1.08
DNMT1-217ENST00000589091 MST1RQ04912 1400 aa21.79■■□□□ 1.08
DNMT1-217ENST00000589091 FOXD1Q16676 465 aa21.78■■□□□ 1.08
DNMT1-217ENST00000589091 KNDC1Q76NI1 1749 aa21.77■■□□□ 1.08
DNMT1-217ENST00000589091 SPATA31E1Q6ZUB1 1445 aa21.77■■□□□ 1.08
DNMT1-217ENST00000589091 ANKRD30BQ9BXX2 1392 aa21.75■■□□□ 1.07
DNMT1-217ENST00000589091 BRINP3Q76B58 766 aa21.75■■□□□ 1.07
DNMT1-217ENST00000589091 SPATA31A6Q5VVP1 1343 aa21.74■■□□□ 1.07
DNMT1-217ENST00000589091 LAMC1P11047 1609 aa21.73■■□□□ 1.07
DNMT1-217ENST00000589091 RGS17Q9UGC6 210 aaPredicted RBP21.73■■□□□ 1.07
DNMT1-217ENST00000589091 ROBO2Q9HCK4 1378 aa21.71■■□□□ 1.07
DNMT1-217ENST00000589091 RGL3Q3MIN7 710 aa21.69■■□□□ 1.06
DNMT1-217ENST00000589091 RAB3GAP2Q9H2M9 1393 aa21.69■■□□□ 1.06
DNMT1-217ENST00000589091 CDC42BPGQ6DT37 1551 aa21.69■■□□□ 1.06
DNMT1-217ENST00000589091 LRP6O75581 1613 aa21.68■■□□□ 1.06
DNMT1-217ENST00000589091 C1orf167Q5SNV9 1468 aa21.67■■□□□ 1.06
DNMT1-217ENST00000589091 PIK3C2GO75747 1445 aa21.67■■□□□ 1.06
DNMT1-217ENST00000589091 ADGRF5Q8IZF2 1346 aa21.67■■□□□ 1.06
DNMT1-217ENST00000589091 TECPR2O15040 1411 aa21.66■■□□□ 1.06
DNMT1-217ENST00000589091 MYOM2P54296 1465 aa21.64■■□□□ 1.06
DNMT1-217ENST00000589091 MEX3CQ5U5Q3 659 aaKnown RBP21.63■■□□□ 1.05
DNMT1-217ENST00000589091 POTEAQ6S8J7 498 aa21.63■■□□□ 1.05
DNMT1-217ENST00000589091 LRRC59Q96AG4 307 aaKnown RBP21.63■■□□□ 1.05
DNMT1-217ENST00000589091 LRPPRCP42704 1394 aaKnown RBP21.62■■□□□ 1.05
DNMT1-217ENST00000589091 NRXN1Q9ULB1 1477 aa21.62■■□□□ 1.05
DNMT1-217ENST00000589091 FMN2Q9NZ56 1722 aa21.61■■□□□ 1.05
DNMT1-217ENST00000589091 ABCC11Q96J66 1382 aa21.6■■□□□ 1.05
DNMT1-217ENST00000589091 YTHDC2Q9H6S0 1430 aaKnown RBP21.58■■□□□ 1.05
DNMT1-217ENST00000589091 ZNF772Q68DY9 489 aaPredicted RBP21.58■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms