RNA–Protein interactions for RNA: ENST00000588687.5

CCDC43-204, Transcript of coiled-coil domain containing 43, humanhuman

TSL 2

Gene CCDC43, Length 721 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43-204ENST00000588687 SLC52A1Q9NWF4 448 aa28.71■■■□□ 2.19
CCDC43-204ENST00000588687 ROBO1Q9Y6N7 1651 aa28.7■■■□□ 2.19
CCDC43-204ENST00000588687 SLC26A8Q96RN1 970 aa28.7■■■□□ 2.18
CCDC43-204ENST00000588687 E9PCH4 1651 aa28.68■■■□□ 2.18
CCDC43-204ENST00000588687 FAM50AQ14320 339 aaKnown RBP28.68■■■□□ 2.18
CCDC43-204ENST00000588687 PHF23Q9BUL5 403 aaPredicted RBP28.67■■■□□ 2.18
CCDC43-204ENST00000588687 CHD2O14647 1828 aaKnown RBP28.66■■■□□ 2.18
CCDC43-204ENST00000588687 IQGAP3Q86VI3 1631 aa28.65■■■□□ 2.18
CCDC43-204ENST00000588687 PLEKHG1Q9ULL1 1385 aa28.64■■■□□ 2.18
CCDC43-204ENST00000588687 RIMS2Q9UQ26 1411 aa28.62■■■□□ 2.17
CCDC43-204ENST00000588687 RGS17Q9UGC6 210 aaPredicted RBP28.62■■■□□ 2.17
CCDC43-204ENST00000588687 RBM33Q96EV2 1170 aaKnown RBP28.61■■■□□ 2.17
CCDC43-204ENST00000588687 ROCK1Q13464 1354 aa28.61■■■□□ 2.17
CCDC43-204ENST00000588687 PROSER2Q86WR7 435 aaPredicted RBP28.58■■■□□ 2.17
CCDC43-204ENST00000588687 ADAMTS13Q76LX8 1427 aa28.55■■■□□ 2.16
CCDC43-204ENST00000588687 DIP2AQ14689 1571 aa28.54■■■□□ 2.16
CCDC43-204ENST00000588687 MSH6P52701 1360 aa28.53■■■□□ 2.16
CCDC43-204ENST00000588687 PHLPP1O60346 1717 aa28.51■■■□□ 2.15
CCDC43-204ENST00000588687 COL16A1Q07092 1604 aaPredicted RBP28.49■■■□□ 2.15
CCDC43-204ENST00000588687 NCOA3Q9Y6Q9 1424 aa28.47■■■□□ 2.15
CCDC43-204ENST00000588687 TBX22Q9Y458 520 aa28.47■■■□□ 2.15
CCDC43-204ENST00000588687 PPP1R15AO75807 674 aaPredicted RBP28.46■■■□□ 2.15
CCDC43-204ENST00000588687 BCANQ96GW7 911 aa28.46■■■□□ 2.15
CCDC43-204ENST00000588687 NRXN3Q9Y4C0 1643 aa28.45■■■□□ 2.14
CCDC43-204ENST00000588687 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.44■■■□□ 2.14
CCDC43-204ENST00000588687 PIK3R4Q99570 1358 aa28.43■■■□□ 2.14
CCDC43-204ENST00000588687 SLAIN2Q9P270 581 aa28.43■■■□□ 2.14
CCDC43-204ENST00000588687 SPHKAPQ2M3C7 1700 aa28.43■■■□□ 2.14
CCDC43-204ENST00000588687 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.42■■■□□ 2.14
CCDC43-204ENST00000588687 TRPM2O94759 1503 aa28.42■■■□□ 2.14
CCDC43-204ENST00000588687 HDGFP51858 240 aaKnown RBP28.41■■■□□ 2.14
CCDC43-204ENST00000588687 NUP155O75694 1391 aa28.4■■■□□ 2.14
CCDC43-204ENST00000588687 POTEAQ6S8J7 498 aa28.4■■■□□ 2.14
CCDC43-204ENST00000588687 XRN1Q8IZH2 1706 aaKnown RBP28.4■■■□□ 2.14
CCDC43-204ENST00000588687 PTPRUQ92729 1446 aa28.39■■■□□ 2.14
CCDC43-204ENST00000588687 AHDC1Q5TGY3 1603 aaPredicted RBP28.39■■■□□ 2.13
CCDC43-204ENST00000588687 SETBP1Q9Y6X0 1596 aa28.38■■■□□ 2.13
CCDC43-204ENST00000588687 NUTM2DQ5VT03 806 aaPredicted RBP28.38■■■□□ 2.13
CCDC43-204ENST00000588687 CHGAP10645 457 aaKnown RBP28.37■■■□□ 2.13
CCDC43-204ENST00000588687 JCADQ9P266 1359 aa28.37■■■□□ 2.13
CCDC43-204ENST00000588687 LRP6O75581 1613 aa28.34■■■□□ 2.13
CCDC43-204ENST00000588687 SHPRHQ149N8 1683 aa28.32■■■□□ 2.12
CCDC43-204ENST00000588687 SETD1AO15047 1707 aaKnown RBP28.31■■■□□ 2.12
CCDC43-204ENST00000588687 CLTCL1P53675 1640 aa28.29■■■□□ 2.12
CCDC43-204ENST00000588687 DCCP43146 1447 aa28.28■■■□□ 2.12
CCDC43-204ENST00000588687 NEXMIFQ5QGS0 1516 aa28.28■■■□□ 2.12
CCDC43-204ENST00000588687 ITGAEP38570 1179 aa28.27■■■□□ 2.12
CCDC43-204ENST00000588687 C19orf44Q9H6X5 657 aa28.27■■■□□ 2.12
CCDC43-204ENST00000588687 CADPS2Q86UW7 1296 aa28.26■■■□□ 2.11
CCDC43-204ENST00000588687 AMOTL2Q9Y2J4 779 aa28.25■■■□□ 2.11
CCDC43-204ENST00000588687 C14orf37Q86TY3 774 aa28.23■■■□□ 2.11
CCDC43-204ENST00000588687 RRBP1Q9P2E9 1410 aaKnown RBP28.23■■■□□ 2.11
CCDC43-204ENST00000588687 ASXL1Q8IXJ9 1541 aa28.23■■■□□ 2.11
CCDC43-204ENST00000588687 NHSL1Q5SYE7 1610 aa28.22■■■□□ 2.11
CCDC43-204ENST00000588687 METP08581 1390 aa28.22■■■□□ 2.11
CCDC43-204ENST00000588687 SPATA31A6Q5VVP1 1343 aa28.21■■■□□ 2.11
CCDC43-204ENST00000588687 NALCNQ8IZF0 1738 aa28.21■■■□□ 2.11
CCDC43-204ENST00000588687 MST1RQ04912 1400 aa28.2■■■□□ 2.11
CCDC43-204ENST00000588687 ATF3P18847 181 aa28.2■■■□□ 2.1
CCDC43-204ENST00000588687 PPARGC1BQ86YN6 1023 aaKnown RBP28.2■■■□□ 2.1
CCDC43-204ENST00000588687 NAIPQ13075 1403 aa28.19■■■□□ 2.1
CCDC43-204ENST00000588687 BRINP3Q76B58 766 aa28.19■■■□□ 2.1
CCDC43-204ENST00000588687 KIF1BO60333 1816 aa28.16■■■□□ 2.1
CCDC43-204ENST00000588687 ADGRL3Q9HAR2 1447 aa28.15■■■□□ 2.1
CCDC43-204ENST00000588687 SETD5Q9C0A6 1442 aa28.13■■■□□ 2.09
CCDC43-204ENST00000588687 ZNF326Q5BKZ1 582 aaKnown RBP28.09■■■□□ 2.09
CCDC43-204ENST00000588687 PRAG1Q86YV5 1406 aa28.09■■■□□ 2.09
CCDC43-204ENST00000588687 LAMC1P11047 1609 aa28.08■■■□□ 2.09
CCDC43-204ENST00000588687 HFM1A2PYH4 1435 aa28.07■■■□□ 2.08
CCDC43-204ENST00000588687 PTCH1Q13635 1447 aa28.07■■■□□ 2.08
CCDC43-204ENST00000588687 PPLO60437 1756 aa28.04■■■□□ 2.08
CCDC43-204ENST00000588687 ZNF772Q68DY9 489 aaPredicted RBP28.03■■■□□ 2.08
CCDC43-204ENST00000588687 MEX3CQ5U5Q3 659 aaKnown RBP28.02■■■□□ 2.08
CCDC43-204ENST00000588687 C1orf167Q5SNV9 1468 aa27.99■■■□□ 2.07
CCDC43-204ENST00000588687 CDK12Q9NYV4 1490 aaPredicted RBP27.99■■■□□ 2.07
CCDC43-204ENST00000588687 PNPLA6Q8IY17 1366 aa27.99■■■□□ 2.07
CCDC43-204ENST00000588687 ROBO2Q9HCK4 1378 aa27.99■■■□□ 2.07
CCDC43-204ENST00000588687 DDX17Q92841 729 aaKnown RBP27.96■■■□□ 2.07
CCDC43-204ENST00000588687 NUTM2BA6NNL0 878 aaPredicted RBP27.93■■■□□ 2.06
CCDC43-204ENST00000588687 NUTM2EB1AL46 878 aaPredicted RBP27.93■■■□□ 2.06
CCDC43-204ENST00000588687 NUTM2AQ8IVF1 878 aaPredicted RBP27.93■■■□□ 2.06
CCDC43-204ENST00000588687 LRRC59Q96AG4 307 aaKnown RBP27.92■■■□□ 2.06
CCDC43-204ENST00000588687 AFF2P51816 1311 aa27.92■■■□□ 2.06
CCDC43-204ENST00000588687 TRIM52Q96A61 297 aa27.91■■■□□ 2.06
CCDC43-204ENST00000588687 UPF1Q92900 1129 aaKnown RBP eCLIP27.9■■■□□ 2.068e-6■■□□□ 12.8
CCDC43-204ENST00000588687 IFT172Q9UG01 1749 aa27.89■■■□□ 2.06
CCDC43-204ENST00000588687 VGFO15240 615 aaPredicted RBP27.89■■■□□ 2.06
CCDC43-204ENST00000588687 CDC42BPGQ6DT37 1551 aa27.89■■■□□ 2.05
CCDC43-204ENST00000588687 RPGRIP1LQ68CZ1 1315 aa27.89■■■□□ 2.05
CCDC43-204ENST00000588687 RXRBP28702 533 aa27.87■■■□□ 2.05
CCDC43-204ENST00000588687 COL22A1Q8NFW1 1626 aaPredicted RBP27.87■■■□□ 2.05
CCDC43-204ENST00000588687 RGS12O14924 1447 aa27.86■■■□□ 2.05
CCDC43-204ENST00000588687 SOS2Q07890 1332 aaPredicted RBP27.86■■■□□ 2.05
CCDC43-204ENST00000588687 SLC4A1APQ9BWU0 796 aaKnown RBP27.85■■■□□ 2.05
CCDC43-204ENST00000588687 SPATA31E1Q6ZUB1 1445 aa27.84■■■□□ 2.05
CCDC43-204ENST00000588687 ORAI2Q96SN7 254 aa27.83■■■□□ 2.05
CCDC43-204ENST00000588687 TECPR2O15040 1411 aa27.82■■■□□ 2.04
CCDC43-204ENST00000588687 KNDC1Q76NI1 1749 aa27.81■■■□□ 2.04
CCDC43-204ENST00000588687 C8orf37Q96NL8 207 aa27.8■■■□□ 2.04
CCDC43-204ENST00000588687 PXDNQ92626 1479 aa27.78■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms