RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 FGD6Q6ZV73 1430 aa17.42■□□□□ 0.38
VPS4B-202ENST00000588059 ANKRD30AQ9BXX3 1397 aa17.41■□□□□ 0.38
VPS4B-202ENST00000588059 JCADQ9P266 1359 aa17.41■□□□□ 0.38
VPS4B-202ENST00000588059 ZFYVE9O95405 1425 aa17.41■□□□□ 0.38
VPS4B-202ENST00000588059 GCC2Q8IWJ2 1684 aa17.41■□□□□ 0.38
VPS4B-202ENST00000588059 SLAIN2Q9P270 581 aa17.4■□□□□ 0.38
VPS4B-202ENST00000588059 RPRD2Q5VT52 1461 aaKnown RBP17.38■□□□□ 0.37
VPS4B-202ENST00000588059 LOC105371045A0A1W2PR82 267 aa17.38■□□□□ 0.37
VPS4B-202ENST00000588059 SLC52A1Q9NWF4 448 aa17.38■□□□□ 0.37
VPS4B-202ENST00000588059 CHIC2Q9UKJ5 165 aa17.38■□□□□ 0.37
VPS4B-202ENST00000588059 LRP6O75581 1613 aa17.38■□□□□ 0.37
VPS4B-202ENST00000588059 PLEKHG1Q9ULL1 1385 aa17.38■□□□□ 0.37
VPS4B-202ENST00000588059 TMEM131LA2VDJ0 1609 aa17.37■□□□□ 0.37
VPS4B-202ENST00000588059 ADGRL2O95490 1459 aa17.37■□□□□ 0.37
VPS4B-202ENST00000588059 BCANQ96GW7 911 aa17.36■□□□□ 0.37
VPS4B-202ENST00000588059 RIMS2Q9UQ26 1411 aa17.35■□□□□ 0.37
VPS4B-202ENST00000588059 SHPRHQ149N8 1683 aa17.34■□□□□ 0.37
VPS4B-202ENST00000588059 AHDC1Q5TGY3 1603 aaPredicted RBP17.34■□□□□ 0.37
VPS4B-202ENST00000588059 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.33■□□□□ 0.37
VPS4B-202ENST00000588059 NCOA3Q9Y6Q9 1424 aa17.33■□□□□ 0.36
VPS4B-202ENST00000588059 SPATA31A6Q5VVP1 1343 aa17.31■□□□□ 0.36
VPS4B-202ENST00000588059 DIP2AQ14689 1571 aa17.31■□□□□ 0.36
VPS4B-202ENST00000588059 ADAMTS13Q76LX8 1427 aa17.3■□□□□ 0.36
VPS4B-202ENST00000588059 ANKRD50Q9ULJ7 1429 aa17.3■□□□□ 0.36
VPS4B-202ENST00000588059 PPP1R15AO75807 674 aaPredicted RBP17.3■□□□□ 0.36
VPS4B-202ENST00000588059 TBX22Q9Y458 520 aa17.29■□□□□ 0.36
VPS4B-202ENST00000588059 UNC13BO14795 1591 aa17.28■□□□□ 0.36
VPS4B-202ENST00000588059 APLP2Q06481 763 aa17.28■□□□□ 0.36
VPS4B-202ENST00000588059 E9PCH4 1651 aa17.27■□□□□ 0.36
VPS4B-202ENST00000588059 HDGFP51858 240 aaKnown RBP17.27■□□□□ 0.36
VPS4B-202ENST00000588059 MEX3CQ5U5Q3 659 aaKnown RBP17.27■□□□□ 0.36
VPS4B-202ENST00000588059 UPF1Q92900 1129 aaKnown RBP eCLIP17.27■□□□□ 0.36
VPS4B-202ENST00000588059 ZNF772Q68DY9 489 aaPredicted RBP17.26■□□□□ 0.35
VPS4B-202ENST00000588059 C14orf37Q86TY3 774 aa17.26■□□□□ 0.35
VPS4B-202ENST00000588059 PIK3R4Q99570 1358 aa17.26■□□□□ 0.35
VPS4B-202ENST00000588059 CADPS2Q86UW7 1296 aa17.25■□□□□ 0.35
VPS4B-202ENST00000588059 TRIM52Q96A61 297 aa17.25■□□□□ 0.35
VPS4B-202ENST00000588059 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.24■□□□□ 0.35
VPS4B-202ENST00000588059 C19orf44Q9H6X5 657 aa17.24■□□□□ 0.35
VPS4B-202ENST00000588059 TRPM2O94759 1503 aa17.24■□□□□ 0.35
VPS4B-202ENST00000588059 ATF3P18847 181 aa17.23■□□□□ 0.35
VPS4B-202ENST00000588059 NUTM2DQ5VT03 806 aaPredicted RBP17.22■□□□□ 0.35
VPS4B-202ENST00000588059 CDK12Q9NYV4 1490 aaPredicted RBP17.22■□□□□ 0.35
VPS4B-202ENST00000588059 PTPRUQ92729 1446 aa17.21■□□□□ 0.35
VPS4B-202ENST00000588059 IQGAP3Q86VI3 1631 aa17.21■□□□□ 0.35
VPS4B-202ENST00000588059 XRN1Q8IZH2 1706 aaKnown RBP17.21■□□□□ 0.35
VPS4B-202ENST00000588059 CHGAP10645 457 aaKnown RBP17.21■□□□□ 0.35
VPS4B-202ENST00000588059 BRINP3Q76B58 766 aa17.21■□□□□ 0.35
VPS4B-202ENST00000588059 NHSL1Q5SYE7 1610 aa17.21■□□□□ 0.35
VPS4B-202ENST00000588059 ASXL1Q8IXJ9 1541 aa17.21■□□□□ 0.34
VPS4B-202ENST00000588059 DCCP43146 1447 aa17.21■□□□□ 0.34
VPS4B-202ENST00000588059 FAM50AQ14320 339 aaKnown RBP17.2■□□□□ 0.34
VPS4B-202ENST00000588059 NRXN3Q9Y4C0 1643 aa17.2■□□□□ 0.34
VPS4B-202ENST00000588059 RXRBP28702 533 aa17.18■□□□□ 0.34
VPS4B-202ENST00000588059 NUTM2BA6NNL0 878 aaPredicted RBP17.17■□□□□ 0.34
VPS4B-202ENST00000588059 NUTM2EB1AL46 878 aaPredicted RBP17.17■□□□□ 0.34
VPS4B-202ENST00000588059 NUTM2AQ8IVF1 878 aaPredicted RBP17.17■□□□□ 0.34
VPS4B-202ENST00000588059 SETD5Q9C0A6 1442 aa17.17■□□□□ 0.34
VPS4B-202ENST00000588059 AMOTL2Q9Y2J4 779 aa17.17■□□□□ 0.34
VPS4B-202ENST00000588059 SETBP1Q9Y6X0 1596 aa17.16■□□□□ 0.34
VPS4B-202ENST00000588059 MST1RQ04912 1400 aa17.16■□□□□ 0.34
VPS4B-202ENST00000588059 AFF2P51816 1311 aa17.16■□□□□ 0.34
VPS4B-202ENST00000588059 RGS12O14924 1447 aa17.13■□□□□ 0.33
VPS4B-202ENST00000588059 NALCNQ8IZF0 1738 aa17.12■□□□□ 0.33
VPS4B-202ENST00000588059 ROCK1Q13464 1354 aa17.12■□□□□ 0.33
VPS4B-202ENST00000588059 SPHKAPQ2M3C7 1700 aa17.11■□□□□ 0.33
VPS4B-202ENST00000588059 PNPLA6Q8IY17 1366 aa17.1■□□□□ 0.33
VPS4B-202ENST00000588059 ADGRL3Q9HAR2 1447 aa17.1■□□□□ 0.33
VPS4B-202ENST00000588059 METP08581 1390 aa17.09■□□□□ 0.33
VPS4B-202ENST00000588059 NUP155O75694 1391 aa17.08■□□□□ 0.32
VPS4B-202ENST00000588059 LRRC59Q96AG4 307 aaKnown RBP17.08■□□□□ 0.32
VPS4B-202ENST00000588059 LAMC1P11047 1609 aa17.07■□□□□ 0.32
VPS4B-202ENST00000588059 DDX17Q92841 729 aaKnown RBP17.07■□□□□ 0.32
VPS4B-202ENST00000588059 C8orf37Q96NL8 207 aa17.07■□□□□ 0.32
VPS4B-202ENST00000588059 RBM6P78332 1123 aaKnown RBP17.06■□□□□ 0.32
VPS4B-202ENST00000588059 QTRT2Q9H974 415 aaKnown RBP17.05■□□□□ 0.32
VPS4B-202ENST00000588059 NEXMIFQ5QGS0 1516 aa17.05■□□□□ 0.32
VPS4B-202ENST00000588059 C1orf167Q5SNV9 1468 aa17.03■□□□□ 0.32
VPS4B-202ENST00000588059 CLTCL1P53675 1640 aa17.03■□□□□ 0.32
VPS4B-202ENST00000588059 ZNF326Q5BKZ1 582 aaKnown RBP17.01■□□□□ 0.31
VPS4B-202ENST00000588059 PTCH1Q13635 1447 aa16.99■□□□□ 0.31
VPS4B-202ENST00000588059 ADAMTS2O95450 1211 aa16.99■□□□□ 0.31
VPS4B-202ENST00000588059 NGLY1Q96IV0 654 aa16.99■□□□□ 0.31
VPS4B-202ENST00000588059 ATAD2Q6PL18 1390 aa16.99■□□□□ 0.31
VPS4B-202ENST00000588059 KIF1BO60333 1816 aa16.98■□□□□ 0.31
VPS4B-202ENST00000588059 SRCAPQ6ZRS2 3230 aa16.98■□□□□ 0.31
VPS4B-202ENST00000588059 COL22A1Q8NFW1 1626 aaPredicted RBP16.98■□□□□ 0.31
VPS4B-202ENST00000588059 SOS2Q07890 1332 aaPredicted RBP16.96■□□□□ 0.31
VPS4B-202ENST00000588059 PRAG1Q86YV5 1406 aa16.96■□□□□ 0.3
VPS4B-202ENST00000588059 ROBO2Q9HCK4 1378 aa16.95■□□□□ 0.3
VPS4B-202ENST00000588059 USP21Q9UK80 565 aa16.95■□□□□ 0.3
VPS4B-202ENST00000588059 ATRNO75882 1429 aa16.95■□□□□ 0.3
VPS4B-202ENST00000588059 ITGAEP38570 1179 aa16.94■□□□□ 0.3
VPS4B-202ENST00000588059 ORAI2Q96SN7 254 aa16.94■□□□□ 0.3
VPS4B-202ENST00000588059 MARF1Q9Y4F3 1742 aaKnown RBP16.93■□□□□ 0.3
VPS4B-202ENST00000588059 FNBP4Q8N3X1 1017 aaPredicted RBP16.93■□□□□ 0.3
VPS4B-202ENST00000588059 TRPC5Q9UL62 973 aaPredicted RBP16.93■□□□□ 0.3
VPS4B-202ENST00000588059 MYOM2P54296 1465 aa16.93■□□□□ 0.3
VPS4B-202ENST00000588059 EP400Q96L91 3159 aa16.91■□□□□ 0.3
VPS4B-202ENST00000588059 CDC42BPGQ6DT37 1551 aa16.89■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms