RNA–Protein interactions for RNA: ENST00000587220.5

ZNF540-205, Transcript of zinc finger protein 540, humanhuman

TSL 2

Gene ZNF540, Length 576 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-205ENST00000587220 TMEM131LA2VDJ0 1609 aa16.16■□□□□ 0.18
ZNF540-205ENST00000587220 HSPA1LP34931 641 aa16.15■□□□□ 0.18
ZNF540-205ENST00000587220 SENP3Q9H4L4 574 aaPredicted RBP16.15■□□□□ 0.18
ZNF540-205ENST00000587220 RIMS2Q9UQ26 1411 aa16.14■□□□□ 0.17
ZNF540-205ENST00000587220 ZFYVE9O95405 1425 aa16.12■□□□□ 0.17
ZNF540-205ENST00000587220 KCNA6P17658 529 aa16.12■□□□□ 0.17
ZNF540-205ENST00000587220 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.12■□□□□ 0.17
ZNF540-205ENST00000587220 ALKQ9UM73 1620 aa16.12■□□□□ 0.17
ZNF540-205ENST00000587220 XIRP1Q702N8 1843 aaKnown RBP16.11■□□□□ 0.17
ZNF540-205ENST00000587220 PLEKHG1Q9ULL1 1385 aa16.11■□□□□ 0.17
ZNF540-205ENST00000587220 PROSER2Q86WR7 435 aaPredicted RBP16.1■□□□□ 0.17
ZNF540-205ENST00000587220 SPHKAPQ2M3C7 1700 aa16.1■□□□□ 0.17
ZNF540-205ENST00000587220 TMEM94Q12767 1356 aa16.1■□□□□ 0.17
ZNF540-205ENST00000587220 NKTRP30414 1462 aaKnown RBP16.09■□□□□ 0.17
ZNF540-205ENST00000587220 NUTM2DQ5VT03 806 aaPredicted RBP16.08■□□□□ 0.16
ZNF540-205ENST00000587220 NAIPQ13075 1403 aa16.08■□□□□ 0.16
ZNF540-205ENST00000587220 NWD1Q149M9 1564 aa16.08■□□□□ 0.16
ZNF540-205ENST00000587220 ILDR2Q71H61 639 aa16.06■□□□□ 0.16
ZNF540-205ENST00000587220 RBM33Q96EV2 1170 aaKnown RBP16.06■□□□□ 0.16
ZNF540-205ENST00000587220 ZNF326Q5BKZ1 582 aaKnown RBP16.05■□□□□ 0.16
ZNF540-205ENST00000587220 TRIM52Q96A61 297 aa16.05■□□□□ 0.16
ZNF540-205ENST00000587220 HFM1A2PYH4 1435 aa16.04■□□□□ 0.16
ZNF540-205ENST00000587220 CHD2O14647 1828 aaKnown RBP16.04■□□□□ 0.16
ZNF540-205ENST00000587220 TBX22Q9Y458 520 aa16.04■□□□□ 0.16
ZNF540-205ENST00000587220 DIP2AQ14689 1571 aa16.04■□□□□ 0.16
ZNF540-205ENST00000587220 MED1Q15648 1581 aaPredicted RBP16.04■□□□□ 0.16
ZNF540-205ENST00000587220 MSH6P52701 1360 aa16.03■□□□□ 0.16
ZNF540-205ENST00000587220 C14orf37Q86TY3 774 aa16.02■□□□□ 0.16
ZNF540-205ENST00000587220 TRPM2O94759 1503 aa16■□□□□ 0.15
ZNF540-205ENST00000587220 PHF23Q9BUL5 403 aaPredicted RBP16■□□□□ 0.15
ZNF540-205ENST00000587220 CLTCL1P53675 1640 aa16■□□□□ 0.15
ZNF540-205ENST00000587220 ADAMTS13Q76LX8 1427 aa16■□□□□ 0.15
ZNF540-205ENST00000587220 KIF1BO60333 1816 aa15.99■□□□□ 0.15
ZNF540-205ENST00000587220 SLC4A1APQ9BWU0 796 aaKnown RBP15.99■□□□□ 0.15
ZNF540-205ENST00000587220 FAM135BQ49AJ0 1406 aa15.99■□□□□ 0.15
ZNF540-205ENST00000587220 PIK3R4Q99570 1358 aa15.99■□□□□ 0.15
ZNF540-205ENST00000587220 ROBO1Q9Y6N7 1651 aa15.99■□□□□ 0.15
ZNF540-205ENST00000587220 SOCS7O14512 581 aa15.97■□□□□ 0.15
ZNF540-205ENST00000587220 SETBP1Q9Y6X0 1596 aa15.96■□□□□ 0.14
ZNF540-205ENST00000587220 SLAIN2Q9P270 581 aa15.95■□□□□ 0.14
ZNF540-205ENST00000587220 AMOTL2Q9Y2J4 779 aa15.95■□□□□ 0.14
ZNF540-205ENST00000587220 NCOA3Q9Y6Q9 1424 aa15.94■□□□□ 0.14
ZNF540-205ENST00000587220 NRXN3Q9Y4C0 1643 aa15.94■□□□□ 0.14
ZNF540-205ENST00000587220 NEXMIFQ5QGS0 1516 aa15.94■□□□□ 0.14
ZNF540-205ENST00000587220 ATF3P18847 181 aa15.93■□□□□ 0.14
ZNF540-205ENST00000587220 CADPS2Q86UW7 1296 aa15.91■□□□□ 0.14
ZNF540-205ENST00000587220 C19orf44Q9H6X5 657 aa15.91■□□□□ 0.14
ZNF540-205ENST00000587220 PHLPP1O60346 1717 aa15.91■□□□□ 0.14
ZNF540-205ENST00000587220 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.91■□□□□ 0.14
ZNF540-205ENST00000587220 PTPRUQ92729 1446 aa15.9■□□□□ 0.14
ZNF540-205ENST00000587220 XRN1Q8IZH2 1706 aaKnown RBP15.9■□□□□ 0.14
ZNF540-205ENST00000587220 METP08581 1390 aa15.89■□□□□ 0.13
ZNF540-205ENST00000587220 VGFO15240 615 aaPredicted RBP15.89■□□□□ 0.13
ZNF540-205ENST00000587220 FOXD1Q16676 465 aa15.89■□□□□ 0.13
ZNF540-205ENST00000587220 RPGRIP1LQ68CZ1 1315 aa15.87■□□□□ 0.13
ZNF540-205ENST00000587220 CCDC144AA2RUR9 1427 aa15.86■□□□□ 0.13
ZNF540-205ENST00000587220 MPHOSPH9Q99550 1183 aa15.86■□□□□ 0.13
ZNF540-205ENST00000587220 ACIN1Q9UKV3 1341 aaKnown RBP15.86■□□□□ 0.13
ZNF540-205ENST00000587220 PPLO60437 1756 aa15.85■□□□□ 0.13
ZNF540-205ENST00000587220 DCCP43146 1447 aa15.85■□□□□ 0.13
ZNF540-205ENST00000587220 JCADQ9P266 1359 aa15.83■□□□□ 0.12
ZNF540-205ENST00000587220 SETD5Q9C0A6 1442 aa15.82■□□□□ 0.12
ZNF540-205ENST00000587220 COL16A1Q07092 1604 aaPredicted RBP15.82■□□□□ 0.12
ZNF540-205ENST00000587220 RGL3Q3MIN7 710 aa15.81■□□□□ 0.12
ZNF540-205ENST00000587220 SETD1AO15047 1707 aaKnown RBP15.8■□□□□ 0.12
ZNF540-205ENST00000587220 ADGRL3Q9HAR2 1447 aa15.8■□□□□ 0.12
ZNF540-205ENST00000587220 NALCNQ8IZF0 1738 aa15.8■□□□□ 0.12
ZNF540-205ENST00000587220 AHDC1Q5TGY3 1603 aaPredicted RBP15.79■□□□□ 0.12
ZNF540-205ENST00000587220 BRINP3Q76B58 766 aa15.79■□□□□ 0.12
ZNF540-205ENST00000587220 PTCH1Q13635 1447 aa15.78■□□□□ 0.12
ZNF540-205ENST00000587220 ASXL1Q8IXJ9 1541 aa15.78■□□□□ 0.12
ZNF540-205ENST00000587220 MST1RQ04912 1400 aa15.77■□□□□ 0.12
ZNF540-205ENST00000587220 ANKRD30BQ9BXX2 1392 aa15.77■□□□□ 0.12
ZNF540-205ENST00000587220 SPATA31E1Q6ZUB1 1445 aa15.77■□□□□ 0.11
ZNF540-205ENST00000587220 SPATA31A6Q5VVP1 1343 aa15.76■□□□□ 0.11
ZNF540-205ENST00000587220 MEX3CQ5U5Q3 659 aaKnown RBP15.76■□□□□ 0.11
ZNF540-205ENST00000587220 RGS17Q9UGC6 210 aaPredicted RBP15.76■□□□□ 0.11
ZNF540-205ENST00000587220 RAB3GAP2Q9H2M9 1393 aa15.75■□□□□ 0.11
ZNF540-205ENST00000587220 ROBO2Q9HCK4 1378 aa15.75■□□□□ 0.11
ZNF540-205ENST00000587220 IFT172Q9UG01 1749 aa15.75■□□□□ 0.11
ZNF540-205ENST00000587220 SHPRHQ149N8 1683 aa15.75■□□□□ 0.11
ZNF540-205ENST00000587220 ADGRF5Q8IZF2 1346 aa15.74■□□□□ 0.11
ZNF540-205ENST00000587220 NHSL1Q5SYE7 1610 aa15.72■□□□□ 0.11
ZNF540-205ENST00000587220 PRAG1Q86YV5 1406 aa15.72■□□□□ 0.11
ZNF540-205ENST00000587220 STK26Q9P289 416 aa15.72■□□□□ 0.11
ZNF540-205ENST00000587220 C1orf167Q5SNV9 1468 aa15.71■□□□□ 0.1
ZNF540-205ENST00000587220 LRP6O75581 1613 aa15.7■□□□□ 0.1
ZNF540-205ENST00000587220 NUTM2BA6NNL0 878 aaPredicted RBP15.7■□□□□ 0.1
ZNF540-205ENST00000587220 NUTM2EB1AL46 878 aaPredicted RBP15.7■□□□□ 0.1
ZNF540-205ENST00000587220 POTEAQ6S8J7 498 aa15.7■□□□□ 0.1
ZNF540-205ENST00000587220 NUTM2AQ8IVF1 878 aaPredicted RBP15.7■□□□□ 0.1
ZNF540-205ENST00000587220 LRRC59Q96AG4 307 aaKnown RBP15.7■□□□□ 0.1
ZNF540-205ENST00000587220 PIK3C2GO75747 1445 aa15.69■□□□□ 0.1
ZNF540-205ENST00000587220 DDX17Q92841 729 aaKnown RBP15.69■□□□□ 0.1
ZNF540-205ENST00000587220 TMEM132EQ6IEE7 984 aa15.68■□□□□ 0.1
ZNF540-205ENST00000587220 LRPPRCP42704 1394 aaKnown RBP15.67■□□□□ 0.1
ZNF540-205ENST00000587220 CDC42BPGQ6DT37 1551 aa15.66■□□□□ 0.1
ZNF540-205ENST00000587220 KNDC1Q76NI1 1749 aa15.66■□□□□ 0.1
ZNF540-205ENST00000587220 LAMC1P11047 1609 aa15.66■□□□□ 0.1
ZNF540-205ENST00000587220 ZNF772Q68DY9 489 aaPredicted RBP15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms