RNA–Protein interactions for RNA: ENST00000586813.5

TRAF4-216, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 789 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-216ENST00000586813 SLC26A8Q96RN1 970 aa29.86■■■□□ 2.37
TRAF4-216ENST00000586813 ZFYVE9O95405 1425 aa29.86■■■□□ 2.37
TRAF4-216ENST00000586813 TMEM94Q12767 1356 aa29.85■■■□□ 2.37
TRAF4-216ENST00000586813 KCNA6P17658 529 aa29.84■■■□□ 2.37
TRAF4-216ENST00000586813 NKTRP30414 1462 aaKnown RBP29.84■■■□□ 2.37
TRAF4-216ENST00000586813 CHD2O14647 1828 aaKnown RBP29.8■■■□□ 2.36
TRAF4-216ENST00000586813 RIMS2Q9UQ26 1411 aa29.79■■■□□ 2.36
TRAF4-216ENST00000586813 PLEKHG1Q9ULL1 1385 aa29.78■■■□□ 2.36
TRAF4-216ENST00000586813 ROBO1Q9Y6N7 1651 aa29.78■■■□□ 2.36
TRAF4-216ENST00000586813 PHF23Q9BUL5 403 aaPredicted RBP29.77■■■□□ 2.36
TRAF4-216ENST00000586813 FAM135BQ49AJ0 1406 aa29.77■■■□□ 2.36
TRAF4-216ENST00000586813 BCANQ96GW7 911 aa29.76■■■□□ 2.35
TRAF4-216ENST00000586813 PROSER2Q86WR7 435 aaPredicted RBP29.75■■■□□ 2.35
TRAF4-216ENST00000586813 PPP1R15AO75807 674 aaPredicted RBP29.73■■■□□ 2.35
TRAF4-216ENST00000586813 RBM33Q96EV2 1170 aaKnown RBP29.73■■■□□ 2.35
TRAF4-216ENST00000586813 HDGFP51858 240 aaKnown RBP29.7■■■□□ 2.35
TRAF4-216ENST00000586813 DIP2AQ14689 1571 aa29.69■■■□□ 2.34
TRAF4-216ENST00000586813 NUP155O75694 1391 aa29.68■■■□□ 2.34
TRAF4-216ENST00000586813 ITGAEP38570 1179 aa29.68■■■□□ 2.34
TRAF4-216ENST00000586813 MSH6P52701 1360 aa29.67■■■□□ 2.34
TRAF4-216ENST00000586813 CHGAP10645 457 aaKnown RBP29.67■■■□□ 2.34
TRAF4-216ENST00000586813 SPHKAPQ2M3C7 1700 aa29.66■■■□□ 2.34
TRAF4-216ENST00000586813 ABCF1Q8NE71 845 aaKnown RBP eCLIP29.65■■■□□ 2.34
TRAF4-216ENST00000586813 ADAMTS13Q76LX8 1427 aa29.64■■■□□ 2.34
TRAF4-216ENST00000586813 PPARGC1BQ86YN6 1023 aaKnown RBP29.64■■■□□ 2.34
TRAF4-216ENST00000586813 TBX22Q9Y458 520 aa29.63■■■□□ 2.33
TRAF4-216ENST00000586813 PHLPP1O60346 1717 aa29.61■■■□□ 2.33
TRAF4-216ENST00000586813 NUTM2DQ5VT03 806 aaPredicted RBP29.59■■■□□ 2.33
TRAF4-216ENST00000586813 TRPM2O94759 1503 aa29.58■■■□□ 2.33
TRAF4-216ENST00000586813 NCOA3Q9Y6Q9 1424 aa29.57■■■□□ 2.32
TRAF4-216ENST00000586813 PIK3R4Q99570 1358 aa29.56■■■□□ 2.32
TRAF4-216ENST00000586813 SIPA1L2Q9P2F8 1722 aaPredicted RBP29.55■■■□□ 2.32
TRAF4-216ENST00000586813 SLAIN2Q9P270 581 aa29.55■■■□□ 2.32
TRAF4-216ENST00000586813 NRXN3Q9Y4C0 1643 aa29.55■■■□□ 2.32
TRAF4-216ENST00000586813 RGS17Q9UGC6 210 aaPredicted RBP29.54■■■□□ 2.32
TRAF4-216ENST00000586813 RRBP1Q9P2E9 1410 aaKnown RBP29.52■■■□□ 2.32
TRAF4-216ENST00000586813 SETBP1Q9Y6X0 1596 aa29.51■■■□□ 2.31
TRAF4-216ENST00000586813 COL16A1Q07092 1604 aaPredicted RBP29.5■■■□□ 2.31
TRAF4-216ENST00000586813 CLTCL1P53675 1640 aa29.49■■■□□ 2.31
TRAF4-216ENST00000586813 XRN1Q8IZH2 1706 aaKnown RBP29.49■■■□□ 2.31
TRAF4-216ENST00000586813 PTPRUQ92729 1446 aa29.47■■■□□ 2.31
TRAF4-216ENST00000586813 C14orf37Q86TY3 774 aa29.47■■■□□ 2.31
TRAF4-216ENST00000586813 NAIPQ13075 1403 aa29.45■■■□□ 2.3
TRAF4-216ENST00000586813 KIF1BO60333 1816 aa29.44■■■□□ 2.3
TRAF4-216ENST00000586813 JCADQ9P266 1359 aa29.43■■■□□ 2.3
TRAF4-216ENST00000586813 AHDC1Q5TGY3 1603 aaPredicted RBP29.42■■■□□ 2.3
TRAF4-216ENST00000586813 NEXMIFQ5QGS0 1516 aa29.42■■■□□ 2.3
TRAF4-216ENST00000586813 CADPS2Q86UW7 1296 aa29.42■■■□□ 2.3
TRAF4-216ENST00000586813 C19orf44Q9H6X5 657 aa29.42■■■□□ 2.3
TRAF4-216ENST00000586813 AMOTL2Q9Y2J4 779 aa29.42■■■□□ 2.3
TRAF4-216ENST00000586813 ZNF326Q5BKZ1 582 aaKnown RBP29.39■■■□□ 2.3
TRAF4-216ENST00000586813 ATF3P18847 181 aa29.38■■■□□ 2.29
TRAF4-216ENST00000586813 SHPRHQ149N8 1683 aa29.37■■■□□ 2.29
TRAF4-216ENST00000586813 DCCP43146 1447 aa29.37■■■□□ 2.29
TRAF4-216ENST00000586813 POTEAQ6S8J7 498 aa29.36■■■□□ 2.29
TRAF4-216ENST00000586813 METP08581 1390 aa29.34■■■□□ 2.29
TRAF4-216ENST00000586813 HFM1A2PYH4 1435 aa29.33■■■□□ 2.29
TRAF4-216ENST00000586813 NALCNQ8IZF0 1738 aa29.31■■■□□ 2.28
TRAF4-216ENST00000586813 LRP6O75581 1613 aa29.31■■■□□ 2.28
TRAF4-216ENST00000586813 SETD1AO15047 1707 aaKnown RBP29.3■■■□□ 2.28
TRAF4-216ENST00000586813 ASXL1Q8IXJ9 1541 aa29.29■■■□□ 2.28
TRAF4-216ENST00000586813 NHSL1Q5SYE7 1610 aa29.28■■■□□ 2.28
TRAF4-216ENST00000586813 SPATA31A6Q5VVP1 1343 aa29.28■■■□□ 2.28
TRAF4-216ENST00000586813 BRINP3Q76B58 766 aa29.27■■■□□ 2.28
TRAF4-216ENST00000586813 MST1RQ04912 1400 aa29.27■■■□□ 2.28
TRAF4-216ENST00000586813 ADGRL3Q9HAR2 1447 aa29.25■■■□□ 2.27
TRAF4-216ENST00000586813 PPLO60437 1756 aa29.24■■■□□ 2.27
TRAF4-216ENST00000586813 TRIM52Q96A61 297 aa29.23■■■□□ 2.27
TRAF4-216ENST00000586813 PTCH1Q13635 1447 aa29.18■■■□□ 2.26
TRAF4-216ENST00000586813 MEX3CQ5U5Q3 659 aaKnown RBP29.17■■■□□ 2.26
TRAF4-216ENST00000586813 SLC4A1APQ9BWU0 796 aaKnown RBP29.17■■■□□ 2.26
TRAF4-216ENST00000586813 SETD5Q9C0A6 1442 aa29.16■■■□□ 2.26
TRAF4-216ENST00000586813 VGFO15240 615 aaPredicted RBP29.15■■■□□ 2.26
TRAF4-216ENST00000586813 PRAG1Q86YV5 1406 aa29.14■■■□□ 2.26
TRAF4-216ENST00000586813 RPGRIP1LQ68CZ1 1315 aa29.12■■■□□ 2.25
TRAF4-216ENST00000586813 LAMC1P11047 1609 aa29.11■■■□□ 2.25
TRAF4-216ENST00000586813 ZNF772Q68DY9 489 aaPredicted RBP29.1■■■□□ 2.25
TRAF4-216ENST00000586813 ROBO2Q9HCK4 1378 aa29.1■■■□□ 2.25
TRAF4-216ENST00000586813 C1orf167Q5SNV9 1468 aa29.08■■■□□ 2.25
TRAF4-216ENST00000586813 IFT172Q9UG01 1749 aa29.08■■■□□ 2.25
TRAF4-216ENST00000586813 NUTM2BA6NNL0 878 aaPredicted RBP29.07■■■□□ 2.24
TRAF4-216ENST00000586813 NUTM2EB1AL46 878 aaPredicted RBP29.07■■■□□ 2.24
TRAF4-216ENST00000586813 NUTM2AQ8IVF1 878 aaPredicted RBP29.07■■■□□ 2.24
TRAF4-216ENST00000586813 DDX17Q92841 729 aaKnown RBP29.05■■■□□ 2.24
TRAF4-216ENST00000586813 LRRC59Q96AG4 307 aaKnown RBP29.05■■■□□ 2.24
TRAF4-216ENST00000586813 FOXD1Q16676 465 aa29.04■■■□□ 2.24
TRAF4-216ENST00000586813 CCDC144AA2RUR9 1427 aa29.03■■■□□ 2.24
TRAF4-216ENST00000586813 PNPLA6Q8IY17 1366 aa29.03■■■□□ 2.24
TRAF4-216ENST00000586813 CDC42BPGQ6DT37 1551 aa29■■■□□ 2.23
TRAF4-216ENST00000586813 SPATA31E1Q6ZUB1 1445 aa28.99■■■□□ 2.23
TRAF4-216ENST00000586813 AFF2P51816 1311 aa28.96■■■□□ 2.23
TRAF4-216ENST00000586813 KNDC1Q76NI1 1749 aa28.95■■■□□ 2.23
TRAF4-216ENST00000586813 CDK12Q9NYV4 1490 aaPredicted RBP28.95■■■□□ 2.22
TRAF4-216ENST00000586813 ADGRF5Q8IZF2 1346 aa28.94■■■□□ 2.22
TRAF4-216ENST00000586813 RXRBP28702 533 aa28.94■■■□□ 2.22
TRAF4-216ENST00000586813 ORAI2Q96SN7 254 aa28.94■■■□□ 2.22
TRAF4-216ENST00000586813 MPHOSPH9Q99550 1183 aa28.94■■■□□ 2.22
TRAF4-216ENST00000586813 ANKRD30BQ9BXX2 1392 aa28.92■■■□□ 2.22
TRAF4-216ENST00000586813 SOS2Q07890 1332 aaPredicted RBP28.92■■■□□ 2.22
TRAF4-216ENST00000586813 C8orf37Q96NL8 207 aa28.91■■■□□ 2.22
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms