RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 FAM135BQ49AJ0 1406 aa18.38■□□□□ 0.53
LIG3-209ENST00000586435 ROCK1Q13464 1354 aa18.37■□□□□ 0.53
LIG3-209ENST00000586435 IQGAP3Q86VI3 1631 aa18.37■□□□□ 0.53
LIG3-209ENST00000586435 E9PCH4 1651 aa18.37■□□□□ 0.53
LIG3-209ENST00000586435 CHD2O14647 1828 aaKnown RBP18.37■□□□□ 0.53
LIG3-209ENST00000586435 PLEKHG1Q9ULL1 1385 aa18.35■□□□□ 0.53
LIG3-209ENST00000586435 PHF23Q9BUL5 403 aaPredicted RBP18.35■□□□□ 0.53
LIG3-209ENST00000586435 SLC26A8Q96RN1 970 aa18.34■□□□□ 0.53
LIG3-209ENST00000586435 ROBO1Q9Y6N7 1651 aa18.34■□□□□ 0.53
LIG3-209ENST00000586435 RIMS2Q9UQ26 1411 aa18.32■□□□□ 0.52
LIG3-209ENST00000586435 DIP2AQ14689 1571 aa18.3■□□□□ 0.52
LIG3-209ENST00000586435 HDGFP51858 240 aaKnown RBP18.3■□□□□ 0.52
LIG3-209ENST00000586435 PROSER2Q86WR7 435 aaPredicted RBP18.3■□□□□ 0.52
LIG3-209ENST00000586435 SENP3Q9H4L4 574 aaPredicted RBP18.3■□□□□ 0.52
LIG3-209ENST00000586435 MSH6P52701 1360 aa18.28■□□□□ 0.52
LIG3-209ENST00000586435 NCOA3Q9Y6Q9 1424 aa18.26■□□□□ 0.51
LIG3-209ENST00000586435 PPP1R15AO75807 674 aaPredicted RBP18.26■□□□□ 0.51
LIG3-209ENST00000586435 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.26■□□□□ 0.51
LIG3-209ENST00000586435 BCANQ96GW7 911 aa18.26■□□□□ 0.51
LIG3-209ENST00000586435 ADAMTS13Q76LX8 1427 aa18.25■□□□□ 0.51
LIG3-209ENST00000586435 TBX22Q9Y458 520 aa18.25■□□□□ 0.51
LIG3-209ENST00000586435 PIK3R4Q99570 1358 aa18.24■□□□□ 0.51
LIG3-209ENST00000586435 PHLPP1O60346 1717 aa18.23■□□□□ 0.51
LIG3-209ENST00000586435 SPHKAPQ2M3C7 1700 aa18.23■□□□□ 0.51
LIG3-209ENST00000586435 NUP155O75694 1391 aa18.23■□□□□ 0.51
LIG3-209ENST00000586435 RBM33Q96EV2 1170 aaKnown RBP18.23■□□□□ 0.51
LIG3-209ENST00000586435 RGS17Q9UGC6 210 aaPredicted RBP18.21■□□□□ 0.51
LIG3-209ENST00000586435 TRPM2O94759 1503 aa18.21■□□□□ 0.51
LIG3-209ENST00000586435 SLAIN2Q9P270 581 aa18.2■□□□□ 0.5
LIG3-209ENST00000586435 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.2■□□□□ 0.5
LIG3-209ENST00000586435 CHGAP10645 457 aaKnown RBP18.19■□□□□ 0.5
LIG3-209ENST00000586435 COL16A1Q07092 1604 aaPredicted RBP18.19■□□□□ 0.5
LIG3-209ENST00000586435 NRXN3Q9Y4C0 1643 aa18.18■□□□□ 0.5
LIG3-209ENST00000586435 SETBP1Q9Y6X0 1596 aa18.17■□□□□ 0.5
LIG3-209ENST00000586435 XRN1Q8IZH2 1706 aaKnown RBP18.17■□□□□ 0.5
LIG3-209ENST00000586435 JCADQ9P266 1359 aa18.16■□□□□ 0.5
LIG3-209ENST00000586435 AHDC1Q5TGY3 1603 aaPredicted RBP18.15■□□□□ 0.5
LIG3-209ENST00000586435 ITGAEP38570 1179 aa18.14■□□□□ 0.49
LIG3-209ENST00000586435 NUTM2DQ5VT03 806 aaPredicted RBP18.14■□□□□ 0.49
LIG3-209ENST00000586435 CADPS2Q86UW7 1296 aa18.13■□□□□ 0.49
LIG3-209ENST00000586435 DCCP43146 1447 aa18.13■□□□□ 0.49
LIG3-209ENST00000586435 PTPRUQ92729 1446 aa18.13■□□□□ 0.49
LIG3-209ENST00000586435 RRBP1Q9P2E9 1410 aaKnown RBP18.13■□□□□ 0.49
LIG3-209ENST00000586435 C19orf44Q9H6X5 657 aa18.12■□□□□ 0.49
LIG3-209ENST00000586435 CLTCL1P53675 1640 aa18.12■□□□□ 0.49
LIG3-209ENST00000586435 SHPRHQ149N8 1683 aa18.12■□□□□ 0.49
LIG3-209ENST00000586435 KIF1BO60333 1816 aa18.11■□□□□ 0.49
LIG3-209ENST00000586435 C14orf37Q86TY3 774 aa18.1■□□□□ 0.49
LIG3-209ENST00000586435 AMOTL2Q9Y2J4 779 aa18.1■□□□□ 0.49
LIG3-209ENST00000586435 NEXMIFQ5QGS0 1516 aa18.09■□□□□ 0.49
LIG3-209ENST00000586435 POTEAQ6S8J7 498 aa18.09■□□□□ 0.49
LIG3-209ENST00000586435 ATF3P18847 181 aa18.08■□□□□ 0.48
LIG3-209ENST00000586435 NAIPQ13075 1403 aa18.07■□□□□ 0.48
LIG3-209ENST00000586435 SPATA31A6Q5VVP1 1343 aa18.07■□□□□ 0.48
LIG3-209ENST00000586435 PPARGC1BQ86YN6 1023 aaKnown RBP18.06■□□□□ 0.48
LIG3-209ENST00000586435 LRP6O75581 1613 aa18.05■□□□□ 0.48
LIG3-209ENST00000586435 NHSL1Q5SYE7 1610 aa18.05■□□□□ 0.48
LIG3-209ENST00000586435 SETD1AO15047 1707 aaKnown RBP18.03■□□□□ 0.48
LIG3-209ENST00000586435 ASXL1Q8IXJ9 1541 aa18.03■□□□□ 0.48
LIG3-209ENST00000586435 ZNF326Q5BKZ1 582 aaKnown RBP18.03■□□□□ 0.48
LIG3-209ENST00000586435 MST1RQ04912 1400 aa18.03■□□□□ 0.48
LIG3-209ENST00000586435 NALCNQ8IZF0 1738 aa18.03■□□□□ 0.48
LIG3-209ENST00000586435 METP08581 1390 aa18.03■□□□□ 0.48
LIG3-209ENST00000586435 HFM1A2PYH4 1435 aa18.02■□□□□ 0.48
LIG3-209ENST00000586435 BRINP3Q76B58 766 aa18.02■□□□□ 0.48
LIG3-209ENST00000586435 ADGRL3Q9HAR2 1447 aa18.02■□□□□ 0.48
LIG3-209ENST00000586435 SETD5Q9C0A6 1442 aa17.99■□□□□ 0.47
LIG3-209ENST00000586435 PTCH1Q13635 1447 aa17.98■□□□□ 0.47
LIG3-209ENST00000586435 PRAG1Q86YV5 1406 aa17.98■□□□□ 0.47
LIG3-209ENST00000586435 PPLO60437 1756 aa17.98■□□□□ 0.47
LIG3-209ENST00000586435 ZNF772Q68DY9 489 aaPredicted RBP17.96■□□□□ 0.47
LIG3-209ENST00000586435 LAMC1P11047 1609 aa17.96■□□□□ 0.47
LIG3-209ENST00000586435 MEX3CQ5U5Q3 659 aaKnown RBP17.95■□□□□ 0.46
LIG3-209ENST00000586435 RPGRIP1LQ68CZ1 1315 aa17.94■□□□□ 0.46
LIG3-209ENST00000586435 VGFO15240 615 aaPredicted RBP17.93■□□□□ 0.46
LIG3-209ENST00000586435 C1orf167Q5SNV9 1468 aa17.9■□□□□ 0.46
LIG3-209ENST00000586435 CDK12Q9NYV4 1490 aaPredicted RBP17.9■□□□□ 0.46
LIG3-209ENST00000586435 TRIM52Q96A61 297 aa17.9■□□□□ 0.46
LIG3-209ENST00000586435 LRRC59Q96AG4 307 aaKnown RBP17.9■□□□□ 0.46
LIG3-209ENST00000586435 SLC4A1APQ9BWU0 796 aaKnown RBP17.9■□□□□ 0.46
LIG3-209ENST00000586435 PNPLA6Q8IY17 1366 aa17.89■□□□□ 0.45
LIG3-209ENST00000586435 ROBO2Q9HCK4 1378 aa17.89■□□□□ 0.45
LIG3-209ENST00000586435 IFT172Q9UG01 1749 aa17.88■□□□□ 0.45
LIG3-209ENST00000586435 NUTM2BA6NNL0 878 aaPredicted RBP17.86■□□□□ 0.45
LIG3-209ENST00000586435 NUTM2EB1AL46 878 aaPredicted RBP17.86■□□□□ 0.45
LIG3-209ENST00000586435 NUTM2AQ8IVF1 878 aaPredicted RBP17.86■□□□□ 0.45
LIG3-209ENST00000586435 CDC42BPGQ6DT37 1551 aa17.86■□□□□ 0.45
LIG3-209ENST00000586435 AFF2P51816 1311 aa17.84■□□□□ 0.45
LIG3-209ENST00000586435 RXRBP28702 533 aa17.84■□□□□ 0.45
LIG3-209ENST00000586435 KNDC1Q76NI1 1749 aa17.84■□□□□ 0.45
LIG3-209ENST00000586435 CCDC144AA2RUR9 1427 aa17.83■□□□□ 0.45
LIG3-209ENST00000586435 SOS2Q07890 1332 aaPredicted RBP17.83■□□□□ 0.44
LIG3-209ENST00000586435 DDX17Q92841 729 aaKnown RBP17.83■□□□□ 0.44
LIG3-209ENST00000586435 COL22A1Q8NFW1 1626 aaPredicted RBP17.83■□□□□ 0.44
LIG3-209ENST00000586435 SPATA31E1Q6ZUB1 1445 aa17.82■□□□□ 0.44
LIG3-209ENST00000586435 TECPR2O15040 1411 aa17.81■□□□□ 0.44
LIG3-209ENST00000586435 UPF1Q92900 1129 aaKnown RBP eCLIP17.8■□□□□ 0.44
LIG3-209ENST00000586435 ANKRD30BQ9BXX2 1392 aa17.79■□□□□ 0.44
LIG3-209ENST00000586435 ORAI2Q96SN7 254 aa17.79■□□□□ 0.44
LIG3-209ENST00000586435 C8orf37Q96NL8 207 aa17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms