RNA–Protein interactions for RNA: ENST00000586385.5

BRCA1-225, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best) BASIC

Gene BRCA1, Length 781 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-225ENST00000586385 NKTRP30414 1462 aaKnown RBP18.58■□□□□ 0.56
BRCA1-225ENST00000586385 RPRD2Q5VT52 1461 aaKnown RBP18.57■□□□□ 0.56
BRCA1-225ENST00000586385 POTEAQ6S8J7 498 aa18.56■□□□□ 0.56
BRCA1-225ENST00000586385 ROBO1Q9Y6N7 1651 aa18.56■□□□□ 0.56
BRCA1-225ENST00000586385 PLEKHG1Q9ULL1 1385 aa18.55■□□□□ 0.56
BRCA1-225ENST00000586385 FAM50AQ14320 339 aaKnown RBP18.54■□□□□ 0.56
BRCA1-225ENST00000586385 RIMS2Q9UQ26 1411 aa18.53■□□□□ 0.56
BRCA1-225ENST00000586385 TMEM131LA2VDJ0 1609 aa18.52■□□□□ 0.55
BRCA1-225ENST00000586385 SLAIN2Q9P270 581 aa18.5■□□□□ 0.55
BRCA1-225ENST00000586385 MSH6P52701 1360 aa18.5■□□□□ 0.55
BRCA1-225ENST00000586385 ADAMTS13Q76LX8 1427 aa18.49■□□□□ 0.55
BRCA1-225ENST00000586385 BCANQ96GW7 911 aa18.49■□□□□ 0.55
BRCA1-225ENST00000586385 TBX22Q9Y458 520 aa18.48■□□□□ 0.55
BRCA1-225ENST00000586385 MYO5BQ9ULV0 1848 aa18.48■□□□□ 0.55
BRCA1-225ENST00000586385 GCC2Q8IWJ2 1684 aa18.47■□□□□ 0.55
BRCA1-225ENST00000586385 UNC13BO14795 1591 aa18.47■□□□□ 0.55
BRCA1-225ENST00000586385 NUTM2DQ5VT03 806 aaPredicted RBP18.46■□□□□ 0.55
BRCA1-225ENST00000586385 CHD2O14647 1828 aaKnown RBP18.46■□□□□ 0.55
BRCA1-225ENST00000586385 PPP1R15AO75807 674 aaPredicted RBP18.45■□□□□ 0.54
BRCA1-225ENST00000586385 E9PCH4 1651 aa18.44■□□□□ 0.54
BRCA1-225ENST00000586385 JCADQ9P266 1359 aa18.43■□□□□ 0.54
BRCA1-225ENST00000586385 NCOA3Q9Y6Q9 1424 aa18.43■□□□□ 0.54
BRCA1-225ENST00000586385 COL16A1Q07092 1604 aaPredicted RBP18.43■□□□□ 0.54
BRCA1-225ENST00000586385 ROCK1Q13464 1354 aa18.42■□□□□ 0.54
BRCA1-225ENST00000586385 CHGAP10645 457 aaKnown RBP18.42■□□□□ 0.54
BRCA1-225ENST00000586385 PTPRUQ92729 1446 aa18.41■□□□□ 0.54
BRCA1-225ENST00000586385 PHLPP1O60346 1717 aa18.41■□□□□ 0.54
BRCA1-225ENST00000586385 HDGFP51858 240 aaKnown RBP18.41■□□□□ 0.54
BRCA1-225ENST00000586385 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.41■□□□□ 0.54
BRCA1-225ENST00000586385 LRP6O75581 1613 aa18.41■□□□□ 0.54
BRCA1-225ENST00000586385 IQGAP3Q86VI3 1631 aa18.4■□□□□ 0.54
BRCA1-225ENST00000586385 PIK3R4Q99570 1358 aa18.39■□□□□ 0.53
BRCA1-225ENST00000586385 DIP2AQ14689 1571 aa18.38■□□□□ 0.53
BRCA1-225ENST00000586385 C19orf44Q9H6X5 657 aa18.37■□□□□ 0.53
BRCA1-225ENST00000586385 NUP155O75694 1391 aa18.37■□□□□ 0.53
BRCA1-225ENST00000586385 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.36■□□□□ 0.53
BRCA1-225ENST00000586385 AHDC1Q5TGY3 1603 aaPredicted RBP18.35■□□□□ 0.53
BRCA1-225ENST00000586385 CADPS2Q86UW7 1296 aa18.35■□□□□ 0.53
BRCA1-225ENST00000586385 SETD1AO15047 1707 aaKnown RBP18.35■□□□□ 0.53
BRCA1-225ENST00000586385 C14orf37Q86TY3 774 aa18.34■□□□□ 0.53
BRCA1-225ENST00000586385 AMOTL2Q9Y2J4 779 aa18.34■□□□□ 0.53
BRCA1-225ENST00000586385 BRINP3Q76B58 766 aa18.33■□□□□ 0.52
BRCA1-225ENST00000586385 NRXN3Q9Y4C0 1643 aa18.33■□□□□ 0.52
BRCA1-225ENST00000586385 TRPM2O94759 1503 aa18.33■□□□□ 0.52
BRCA1-225ENST00000586385 SPATA31A6Q5VVP1 1343 aa18.32■□□□□ 0.52
BRCA1-225ENST00000586385 ATF3P18847 181 aa18.31■□□□□ 0.52
BRCA1-225ENST00000586385 ITGAEP38570 1179 aa18.3■□□□□ 0.52
BRCA1-225ENST00000586385 SETBP1Q9Y6X0 1596 aa18.3■□□□□ 0.52
BRCA1-225ENST00000586385 METP08581 1390 aa18.3■□□□□ 0.52
BRCA1-225ENST00000586385 XRN1Q8IZH2 1706 aaKnown RBP18.29■□□□□ 0.52
BRCA1-225ENST00000586385 DCCP43146 1447 aa18.28■□□□□ 0.52
BRCA1-225ENST00000586385 MST1RQ04912 1400 aa18.28■□□□□ 0.52
BRCA1-225ENST00000586385 SHPRHQ149N8 1683 aa18.28■□□□□ 0.52
BRCA1-225ENST00000586385 PPARGC1BQ86YN6 1023 aaKnown RBP18.26■□□□□ 0.51
BRCA1-225ENST00000586385 ASXL1Q8IXJ9 1541 aa18.26■□□□□ 0.51
BRCA1-225ENST00000586385 MEX3CQ5U5Q3 659 aaKnown RBP18.24■□□□□ 0.51
BRCA1-225ENST00000586385 ZNF772Q68DY9 489 aaPredicted RBP18.24■□□□□ 0.51
BRCA1-225ENST00000586385 SETD5Q9C0A6 1442 aa18.23■□□□□ 0.51
BRCA1-225ENST00000586385 UPF1Q92900 1129 aaKnown RBP eCLIP18.23■□□□□ 0.51
BRCA1-225ENST00000586385 DDX17Q92841 729 aaKnown RBP18.22■□□□□ 0.51
BRCA1-225ENST00000586385 TRIM52Q96A61 297 aa18.22■□□□□ 0.51
BRCA1-225ENST00000586385 SPHKAPQ2M3C7 1700 aa18.22■□□□□ 0.51
BRCA1-225ENST00000586385 NEXMIFQ5QGS0 1516 aa18.22■□□□□ 0.51
BRCA1-225ENST00000586385 NUTM2BA6NNL0 878 aaPredicted RBP18.21■□□□□ 0.51
BRCA1-225ENST00000586385 NUTM2EB1AL46 878 aaPredicted RBP18.21■□□□□ 0.51
BRCA1-225ENST00000586385 NUTM2AQ8IVF1 878 aaPredicted RBP18.21■□□□□ 0.51
BRCA1-225ENST00000586385 ADGRL3Q9HAR2 1447 aa18.21■□□□□ 0.51
BRCA1-225ENST00000586385 CLTCL1P53675 1640 aa18.2■□□□□ 0.5
BRCA1-225ENST00000586385 ZNF326Q5BKZ1 582 aaKnown RBP18.2■□□□□ 0.5
BRCA1-225ENST00000586385 NHSL1Q5SYE7 1610 aa18.19■□□□□ 0.5
BRCA1-225ENST00000586385 AFF2P51816 1311 aa18.18■□□□□ 0.5
BRCA1-225ENST00000586385 PNPLA6Q8IY17 1366 aa18.17■□□□□ 0.5
BRCA1-225ENST00000586385 RXRBP28702 533 aa18.17■□□□□ 0.5
BRCA1-225ENST00000586385 NAIPQ13075 1403 aa18.16■□□□□ 0.5
BRCA1-225ENST00000586385 CDK12Q9NYV4 1490 aaPredicted RBP18.16■□□□□ 0.5
BRCA1-225ENST00000586385 NALCNQ8IZF0 1738 aa18.15■□□□□ 0.5
BRCA1-225ENST00000586385 RRBP1Q9P2E9 1410 aaKnown RBP18.15■□□□□ 0.5
BRCA1-225ENST00000586385 C1orf167Q5SNV9 1468 aa18.14■□□□□ 0.5
BRCA1-225ENST00000586385 LRRC59Q96AG4 307 aaKnown RBP18.14■□□□□ 0.49
BRCA1-225ENST00000586385 ROBO2Q9HCK4 1378 aa18.14■□□□□ 0.49
BRCA1-225ENST00000586385 PTCH1Q13635 1447 aa18.12■□□□□ 0.49
BRCA1-225ENST00000586385 RGS12O14924 1447 aa18.11■□□□□ 0.49
BRCA1-225ENST00000586385 PRAG1Q86YV5 1406 aa18.11■□□□□ 0.49
BRCA1-225ENST00000586385 C8orf37Q96NL8 207 aa18.1■□□□□ 0.49
BRCA1-225ENST00000586385 ORAI2Q96SN7 254 aa18.1■□□□□ 0.49
BRCA1-225ENST00000586385 LAMC1P11047 1609 aa18.09■□□□□ 0.49
BRCA1-225ENST00000586385 SOS2Q07890 1332 aaPredicted RBP18.08■□□□□ 0.49
BRCA1-225ENST00000586385 QTRT2Q9H974 415 aaKnown RBP18.08■□□□□ 0.48
BRCA1-225ENST00000586385 VGFO15240 615 aaPredicted RBP18.06■□□□□ 0.48
BRCA1-225ENST00000586385 RBM6P78332 1123 aaKnown RBP18.06■□□□□ 0.48
BRCA1-225ENST00000586385 ADAMTS2O95450 1211 aa18.05■□□□□ 0.48
BRCA1-225ENST00000586385 HFM1A2PYH4 1435 aa18.05■□□□□ 0.48
BRCA1-225ENST00000586385 KIF1BO60333 1816 aa18.04■□□□□ 0.48
BRCA1-225ENST00000586385 RPGRIP1LQ68CZ1 1315 aa18.03■□□□□ 0.48
BRCA1-225ENST00000586385 NGLY1Q96IV0 654 aa18.02■□□□□ 0.48
BRCA1-225ENST00000586385 FOXD1Q16676 465 aa18■□□□□ 0.47
BRCA1-225ENST00000586385 FNBP4Q8N3X1 1017 aaPredicted RBP18■□□□□ 0.47
BRCA1-225ENST00000586385 SLC4A1APQ9BWU0 796 aaKnown RBP18■□□□□ 0.47
BRCA1-225ENST00000586385 MYOM2P54296 1465 aa18■□□□□ 0.47
BRCA1-225ENST00000586385 ADGRF5Q8IZF2 1346 aa17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms