RNA–Protein interactions for RNA: ENST00000583780.1

SHMT1-210, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 332 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-210ENST00000583780 NKTRP30414 1462 aaKnown RBP34.03■■■■□ 3.04
SHMT1-210ENST00000583780 MYO5BQ9ULV0 1848 aa34.03■■■■□ 3.04
SHMT1-210ENST00000583780 SLAIN2Q9P270 581 aa34.02■■■■□ 3.04
SHMT1-210ENST00000583780 CHD2O14647 1828 aaKnown RBP34.02■■■■□ 3.04
SHMT1-210ENST00000583780 BCANQ96GW7 911 aa34.01■■■■□ 3.03
SHMT1-210ENST00000583780 ZFYVE9O95405 1425 aa34■■■■□ 3.03
SHMT1-210ENST00000583780 RPRD2Q5VT52 1461 aaKnown RBP33.98■■■■□ 3.03
SHMT1-210ENST00000583780 MSH6P52701 1360 aa33.98■■■■□ 3.03
SHMT1-210ENST00000583780 PLEKHG1Q9ULL1 1385 aa33.96■■■■□ 3.03
SHMT1-210ENST00000583780 ANKRD50Q9ULJ7 1429 aa33.96■■■■□ 3.03
SHMT1-210ENST00000583780 TMEM131LA2VDJ0 1609 aa33.93■■■■□ 3.02
SHMT1-210ENST00000583780 FAM50AQ14320 339 aaKnown RBP33.92■■■■□ 3.02
SHMT1-210ENST00000583780 TBX22Q9Y458 520 aa33.92■■■■□ 3.02
SHMT1-210ENST00000583780 RIMS2Q9UQ26 1411 aa33.92■■■■□ 3.02
SHMT1-210ENST00000583780 PHLPP1O60346 1717 aa33.92■■■■□ 3.02
SHMT1-210ENST00000583780 GCC2Q8IWJ2 1684 aa33.9■■■■□ 3.02
SHMT1-210ENST00000583780 HDGFP51858 240 aaKnown RBP33.9■■■■□ 3.02
SHMT1-210ENST00000583780 JCADQ9P266 1359 aa33.86■■■■□ 3.01
SHMT1-210ENST00000583780 PPP1R15AO75807 674 aaPredicted RBP33.86■■■■□ 3.01
SHMT1-210ENST00000583780 NCOA3Q9Y6Q9 1424 aa33.84■■■■□ 3.01
SHMT1-210ENST00000583780 ADAMTS13Q76LX8 1427 aa33.82■■■■□ 3
SHMT1-210ENST00000583780 NUTM2DQ5VT03 806 aaPredicted RBP33.81■■■■□ 3
SHMT1-210ENST00000583780 ABCF1Q8NE71 845 aaKnown RBP eCLIP33.81■■■■□ 3
SHMT1-210ENST00000583780 COL16A1Q07092 1604 aaPredicted RBP33.81■■■■□ 3
SHMT1-210ENST00000583780 CHGAP10645 457 aaKnown RBP33.8■■■■□ 3
SHMT1-210ENST00000583780 E9PCH4 1651 aa33.78■■■■□ 3
SHMT1-210ENST00000583780 UNC13BO14795 1591 aa33.77■■■■□ 3
SHMT1-210ENST00000583780 SIPA1L2Q9P2F8 1722 aaPredicted RBP33.76■■■□□ 2.99
SHMT1-210ENST00000583780 C19orf44Q9H6X5 657 aa33.75■■■□□ 2.99
SHMT1-210ENST00000583780 SETD1AO15047 1707 aaKnown RBP33.75■■■□□ 2.99
SHMT1-210ENST00000583780 LRP6O75581 1613 aa33.72■■■□□ 2.99
SHMT1-210ENST00000583780 PIK3R4Q99570 1358 aa33.72■■■□□ 2.99
SHMT1-210ENST00000583780 C14orf37Q86TY3 774 aa33.71■■■□□ 2.99
SHMT1-210ENST00000583780 CADPS2Q86UW7 1296 aa33.71■■■□□ 2.99
SHMT1-210ENST00000583780 SPATA31A6Q5VVP1 1343 aa33.7■■■□□ 2.99
SHMT1-210ENST00000583780 AMOTL2Q9Y2J4 779 aa33.68■■■□□ 2.98
SHMT1-210ENST00000583780 DIP2AQ14689 1571 aa33.68■■■□□ 2.98
SHMT1-210ENST00000583780 ATF3P18847 181 aa33.67■■■□□ 2.98
SHMT1-210ENST00000583780 PTPRUQ92729 1446 aa33.67■■■□□ 2.98
SHMT1-210ENST00000583780 AHDC1Q5TGY3 1603 aaPredicted RBP33.67■■■□□ 2.98
SHMT1-210ENST00000583780 IQGAP3Q86VI3 1631 aa33.65■■■□□ 2.98
SHMT1-210ENST00000583780 ROCK1Q13464 1354 aa33.65■■■□□ 2.98
SHMT1-210ENST00000583780 SHPRHQ149N8 1683 aa33.61■■■□□ 2.97
SHMT1-210ENST00000583780 ZNF772Q68DY9 489 aaPredicted RBP33.61■■■□□ 2.97
SHMT1-210ENST00000583780 BRINP3Q76B58 766 aa33.61■■■□□ 2.97
SHMT1-210ENST00000583780 NUP155O75694 1391 aa33.6■■■□□ 2.97
SHMT1-210ENST00000583780 TRPM2O94759 1503 aa33.59■■■□□ 2.97
SHMT1-210ENST00000583780 MEX3CQ5U5Q3 659 aaKnown RBP33.59■■■□□ 2.97
SHMT1-210ENST00000583780 UPF1Q92900 1129 aaKnown RBP eCLIP33.57■■■□□ 2.96
SHMT1-210ENST00000583780 NRXN3Q9Y4C0 1643 aa33.54■■■□□ 2.96
SHMT1-210ENST00000583780 TRIM52Q96A61 297 aa33.54■■■□□ 2.96
SHMT1-210ENST00000583780 XRN1Q8IZH2 1706 aaKnown RBP33.5■■■□□ 2.95
SHMT1-210ENST00000583780 NUTM2BA6NNL0 878 aaPredicted RBP33.49■■■□□ 2.95
SHMT1-210ENST00000583780 NUTM2EB1AL46 878 aaPredicted RBP33.49■■■□□ 2.95
SHMT1-210ENST00000583780 DCCP43146 1447 aa33.49■■■□□ 2.95
SHMT1-210ENST00000583780 NUTM2AQ8IVF1 878 aaPredicted RBP33.49■■■□□ 2.95
SHMT1-210ENST00000583780 SETBP1Q9Y6X0 1596 aa33.47■■■□□ 2.95
SHMT1-210ENST00000583780 RXRBP28702 533 aa33.47■■■□□ 2.95
SHMT1-210ENST00000583780 ITGAEP38570 1179 aa33.47■■■□□ 2.95
SHMT1-210ENST00000583780 METP08581 1390 aa33.47■■■□□ 2.95
SHMT1-210ENST00000583780 MST1RQ04912 1400 aa33.46■■■□□ 2.95
SHMT1-210ENST00000583780 SETD5Q9C0A6 1442 aa33.45■■■□□ 2.95
SHMT1-210ENST00000583780 ASXL1Q8IXJ9 1541 aa33.45■■■□□ 2.95
SHMT1-210ENST00000583780 SPHKAPQ2M3C7 1700 aa33.42■■■□□ 2.94
SHMT1-210ENST00000583780 NHSL1Q5SYE7 1610 aa33.42■■■□□ 2.94
SHMT1-210ENST00000583780 AFF2P51816 1311 aa33.4■■■□□ 2.94
SHMT1-210ENST00000583780 ZNF326Q5BKZ1 582 aaKnown RBP33.4■■■□□ 2.94
SHMT1-210ENST00000583780 LRRC59Q96AG4 307 aaKnown RBP33.4■■■□□ 2.94
SHMT1-210ENST00000583780 DDX17Q92841 729 aaKnown RBP33.39■■■□□ 2.94
SHMT1-210ENST00000583780 CDK12Q9NYV4 1490 aaPredicted RBP33.37■■■□□ 2.93
SHMT1-210ENST00000583780 ADGRL3Q9HAR2 1447 aa33.33■■■□□ 2.93
SHMT1-210ENST00000583780 PPARGC1BQ86YN6 1023 aaKnown RBP33.31■■■□□ 2.92
SHMT1-210ENST00000583780 NEXMIFQ5QGS0 1516 aa33.31■■■□□ 2.92
SHMT1-210ENST00000583780 PNPLA6Q8IY17 1366 aa33.3■■■□□ 2.92
SHMT1-210ENST00000583780 CLTCL1P53675 1640 aa33.29■■■□□ 2.92
SHMT1-210ENST00000583780 NALCNQ8IZF0 1738 aa33.29■■■□□ 2.92
SHMT1-210ENST00000583780 QTRT2Q9H974 415 aaKnown RBP33.29■■■□□ 2.92
SHMT1-210ENST00000583780 C8orf37Q96NL8 207 aa33.27■■■□□ 2.92
SHMT1-210ENST00000583780 RBM6P78332 1123 aaKnown RBP33.24■■■□□ 2.91
SHMT1-210ENST00000583780 C1orf167Q5SNV9 1468 aa33.23■■■□□ 2.91
SHMT1-210ENST00000583780 KIF1BO60333 1816 aa33.23■■■□□ 2.91
SHMT1-210ENST00000583780 RGS12O14924 1447 aa33.2■■■□□ 2.91
SHMT1-210ENST00000583780 ORAI2Q96SN7 254 aa33.2■■■□□ 2.91
SHMT1-210ENST00000583780 LAMC1P11047 1609 aa33.19■■■□□ 2.9
SHMT1-210ENST00000583780 SOS2Q07890 1332 aaPredicted RBP33.18■■■□□ 2.9
SHMT1-210ENST00000583780 ADAMTS2O95450 1211 aa33.17■■■□□ 2.9
SHMT1-210ENST00000583780 NGLY1Q96IV0 654 aa33.17■■■□□ 2.9
SHMT1-210ENST00000583780 ROBO2Q9HCK4 1378 aa33.17■■■□□ 2.9
SHMT1-210ENST00000583780 VGFO15240 615 aaPredicted RBP33.15■■■□□ 2.9
SHMT1-210ENST00000583780 PTCH1Q13635 1447 aa33.13■■■□□ 2.89
SHMT1-210ENST00000583780 NAIPQ13075 1403 aa33.12■■■□□ 2.89
SHMT1-210ENST00000583780 PRAG1Q86YV5 1406 aa33.08■■■□□ 2.89
SHMT1-210ENST00000583780 RPGRIP1LQ68CZ1 1315 aa33.06■■■□□ 2.88
SHMT1-210ENST00000583780 FNBP4Q8N3X1 1017 aaPredicted RBP33.06■■■□□ 2.88
SHMT1-210ENST00000583780 USP21Q9UK80 565 aa33.06■■■□□ 2.88
SHMT1-210ENST00000583780 RRBP1Q9P2E9 1410 aaKnown RBP33.04■■■□□ 2.88
SHMT1-210ENST00000583780 TRPC5Q9UL62 973 aaPredicted RBP33.01■■■□□ 2.87
SHMT1-210ENST00000583780 PPLO60437 1756 aa33.01■■■□□ 2.87
SHMT1-210ENST00000583780 HFM1A2PYH4 1435 aa33■■■□□ 2.87
SHMT1-210ENST00000583780 COL22A1Q8NFW1 1626 aaPredicted RBP32.99■■■□□ 2.87
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms