RNA–Protein interactions for RNA: ENST00000583705.1

MSI2-217, Transcript of musashi RNA binding protein 2, human

Gene MSI2, Length 7,612 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MSI2-217	ENST00000583705	NUTM2A	Q8IVF1	878 aa	Predicted RBP	13.83	□□□□□ -0.2
MSI2-217	ENST00000583705	TRDN	Q13061	729 aa		13.83	□□□□□ -0.2
MSI2-217	ENST00000583705	CCDC97	Q96F63	343 aa	Predicted RBP	13.83	□□□□□ -0.2
MSI2-217	ENST00000583705	LMOD3	Q0VAK6	560 aa		13.83	□□□□□ -0.2
MSI2-217	ENST00000583705	CYB5RL	Q6IPT4	315 aa		13.82	□□□□□ -0.2
MSI2-217	ENST00000583705	COG3	Q96JB2	828 aa		13.82	□□□□□ -0.2
MSI2-217	ENST00000583705	TTLL5	Q6EMB2	1281 aa		13.82	□□□□□ -0.2
MSI2-217	ENST00000583705	KIF27	Q86VH2	1401 aa		13.82	□□□□□ -0.2
MSI2-217	ENST00000583705	CPLX2	Q6PUV4	134 aa	Known RBP	13.81	□□□□□ -0.2
MSI2-217	ENST00000583705	IFIT2	P09913	472 aa	Known RBP	13.81	□□□□□ -0.2
MSI2-217	ENST00000583705	NEUROD6	Q96NK8	337 aa		13.81	□□□□□ -0.2
MSI2-217	ENST00000583705	ANKRD20A12P	Q8NF67	263 aa		13.81	□□□□□ -0.2
MSI2-217	ENST00000583705	CENPJ	Q9HC77	1338 aa	Predicted RBP	13.8	□□□□□ -0.2
MSI2-217	ENST00000583705	CHMP4BP1	P59074	171 aa		13.8	□□□□□ -0.2
MSI2-217	ENST00000583705	EIF3A	Q14152	1382 aa	Known RBP	13.8	□□□□□ -0.2
MSI2-217	ENST00000583705	HOMER1	Q86YM7	354 aa		13.8	□□□□□ -0.2
MSI2-217	ENST00000583705	NUP155	O75694	1391 aa		13.8	□□□□□ -0.2
MSI2-217	ENST00000583705	BAZ1B	Q9UIG0	1483 aa	Known RBP	13.79	□□□□□ -0.2
MSI2-217	ENST00000583705	ATF3	P18847	181 aa		13.79	□□□□□ -0.2
MSI2-217	ENST00000583705	MYCN	P04198	464 aa	Predicted RBP	13.79	□□□□□ -0.2
MSI2-217	ENST00000583705	LRRFIP1	Q32MZ4	808 aa	Known RBP	13.79	□□□□□ -0.2
MSI2-217	ENST00000583705	MINK1	Q8N4C8	1332 aa	Predicted RBP	13.79	□□□□□ -0.2
MSI2-217	ENST00000583705	WASHC4	Q2M389	1173 aa		13.79	□□□□□ -0.2
MSI2-217	ENST00000583705	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	13.79	□□□□□ -0.2
MSI2-217	ENST00000583705	CALR	P27797	417 aa	Known RBP	13.78	□□□□□ -0.2
MSI2-217	ENST00000583705	PIP4K2B	P78356	416 aa		13.78	□□□□□ -0.2
MSI2-217	ENST00000583705	BICD2	Q8TD16	824 aa		13.78	□□□□□ -0.2
MSI2-217	ENST00000583705	RBM5	P52756	815 aa	Known RBP eCLIP	13.77	□□□□□ -0.2
MSI2-217	ENST00000583705	DHX37	Q8IY37	1157 aa	Known RBP	13.76	□□□□□ -0.21
MSI2-217	ENST00000583705	STRN4	Q9NRL3	753 aa		13.76	□□□□□ -0.21
MSI2-217	ENST00000583705	OFD1	O75665	1012 aa		13.76	□□□□□ -0.21
MSI2-217	ENST00000583705	EFCAB2	Q5VUJ9	269 aa		13.76	□□□□□ -0.21
MSI2-217	ENST00000583705	RUFY1	Q96T51	708 aa		13.76	□□□□□ -0.21
MSI2-217	ENST00000583705	DCAF1	Q9Y4B6	1507 aa		13.76	□□□□□ -0.21
MSI2-217	ENST00000583705	CHMP4C	Q96CF2	233 aa		13.76	□□□□□ -0.21
MSI2-217	ENST00000583705	RIC3	Q7Z5B4	369 aa		13.75	□□□□□ -0.21
MSI2-217	ENST00000583705	AK7	Q96M32	723 aa		13.75	□□□□□ -0.21
MSI2-217	ENST00000583705	G3BP1	Q13283	466 aa	Known RBP eCLIP	13.75	□□□□□ -0.21
MSI2-217	ENST00000583705	GPS2	Q13227	327 aa		13.74	□□□□□ -0.21
MSI2-217	ENST00000583705	ZNF771	Q7L3S4	317 aa	Predicted RBP	13.74	□□□□□ -0.21
MSI2-217	ENST00000583705	DDX49	Q9Y6V7	483 aa	Known RBP	13.74	□□□□□ -0.21
MSI2-217	ENST00000583705	HOOK1	Q9UJC3	728 aa	Known RBP	13.74	□□□□□ -0.21
MSI2-217	ENST00000583705	RBM42	Q9BTD8	480 aa	Known RBP	13.74	□□□□□ -0.21
MSI2-217	ENST00000583705	PDILT	Q8N807	584 aa		13.74	□□□□□ -0.21
MSI2-217	ENST00000583705	VPS37C	A5D8V6	355 aa	Predicted RBP	13.73	□□□□□ -0.21
MSI2-217	ENST00000583705	SPDYE4	A6NLX3	237 aa		13.73	□□□□□ -0.21
MSI2-217	ENST00000583705	ANKRD62	A6NC57	917 aa		13.73	□□□□□ -0.21
MSI2-217	ENST00000583705	ATP2B1	P20020	1258 aa		13.73	□□□□□ -0.21
MSI2-217	ENST00000583705	NLRP2	Q9NX02	1062 aa		13.73	□□□□□ -0.21
MSI2-217	ENST00000583705	DDX58	O95786	925 aa	Known RBP	13.72	□□□□□ -0.21
MSI2-217	ENST00000583705	FKBP5	Q13451	457 aa	Predicted RBP	13.71	□□□□□ -0.21
MSI2-217	ENST00000583705	NEFH	P12036	1026 aa		13.71	□□□□□ -0.21
MSI2-217	ENST00000583705	ZKSCAN1	P17029	563 aa	Predicted RBP	13.71	□□□□□ -0.21
MSI2-217	ENST00000583705	SAFB	Q15424	915 aa	Known RBP eCLIP	13.71	□□□□□ -0.21
MSI2-217	ENST00000583705	RBM19	Q9Y4C8	960 aa	Known RBP	13.71	□□□□□ -0.21
MSI2-217	ENST00000583705	MATR3	P43243	847 aa	Known RBP eCLIP	13.71	□□□□□ -0.22	4e-6	■■■■□ 24.5
MSI2-217	ENST00000583705	RUFY2	Q8WXA3	655 aa		13.71	□□□□□ -0.22
MSI2-217	ENST00000583705	RAPGEF4	Q8WZA2	1011 aa		13.7	□□□□□ -0.22
MSI2-217	ENST00000583705	PLCD4	Q9BRC7	762 aa		13.7	□□□□□ -0.22
MSI2-217	ENST00000583705	ZHX3	Q9H4I2	956 aa		13.7	□□□□□ -0.22
MSI2-217	ENST00000583705	CAGE1	Q8TC20	777 aa		13.7	□□□□□ -0.22
MSI2-217	ENST00000583705	RALYL	Q86SE5	291 aa	Known RBP	13.69	□□□□□ -0.22
MSI2-217	ENST00000583705	MAP7D2	Q96T17	732 aa		13.69	□□□□□ -0.22
MSI2-217	ENST00000583705	BRPF1	P55201	1214 aa	Predicted RBP	13.69	□□□□□ -0.22
MSI2-217	ENST00000583705	RALBP1	Q15311	655 aa		13.69	□□□□□ -0.22
MSI2-217	ENST00000583705	WRN	Q14191	1432 aa	Predicted RBP eCLIP	13.69	□□□□□ -0.22
MSI2-217	ENST00000583705	CDK5RAP3	Q96JB5	506 aa		13.69	□□□□□ -0.22
MSI2-217	ENST00000583705	KRT18	P05783	430 aa	Known RBP	13.69	□□□□□ -0.22
MSI2-217	ENST00000583705	MPHOSPH9	Q99550	1183 aa		13.69	□□□□□ -0.22
MSI2-217	ENST00000583705	BRMS1	Q9HCU9	246 aa		13.68	□□□□□ -0.22
MSI2-217	ENST00000583705	MPHOSPH10	O00566	681 aa	Known RBP	13.68	□□□□□ -0.22
MSI2-217	ENST00000583705	HMOX1	P09601	288 aa		13.68	□□□□□ -0.22
MSI2-217	ENST00000583705	PLCD3	Q8N3E9	789 aa		13.68	□□□□□ -0.22
MSI2-217	ENST00000583705	ATP6V1D	Q9Y5K8	247 aa		13.68	□□□□□ -0.22
MSI2-217	ENST00000583705	CARMIL2	Q6F5E8	1435 aa		13.68	□□□□□ -0.22
MSI2-217	ENST00000583705	SYCP1	Q15431	976 aa		13.68	□□□□□ -0.22
MSI2-217	ENST00000583705	FAM161A	Q3B820	660 aa		13.67	□□□□□ -0.22
MSI2-217	ENST00000583705	ARHGAP35	Q9NRY4	1499 aa		13.67	□□□□□ -0.22
MSI2-217	ENST00000583705	EEA1	Q15075	1411 aa		13.67	□□□□□ -0.22
MSI2-217	ENST00000583705	TSPYL4	Q9UJ04	414 aa		13.66	□□□□□ -0.22
MSI2-217	ENST00000583705	CUX2	O14529	1486 aa		13.66	□□□□□ -0.22
MSI2-217	ENST00000583705	SASS6	Q6UVJ0	657 aa		13.66	□□□□□ -0.22
MSI2-217	ENST00000583705	PDCL3	Q9H2J4	239 aa		13.66	□□□□□ -0.22
MSI2-217	ENST00000583705	KIF6	Q6ZMV9	814 aa		13.65	□□□□□ -0.22
MSI2-217	ENST00000583705	CCDC173	Q0VFZ6	552 aa		13.65	□□□□□ -0.22
MSI2-217	ENST00000583705	DNAJC2	Q99543	621 aa	Known RBP	13.65	□□□□□ -0.22
MSI2-217	ENST00000583705	NEBL	O76041	1014 aa		13.65	□□□□□ -0.22
MSI2-217	ENST00000583705	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	13.65	□□□□□ -0.22
MSI2-217	ENST00000583705	RNF20	Q5VTR2	975 aa		13.65	□□□□□ -0.22
MSI2-217	ENST00000583705	RB1CC1	Q8TDY2	1594 aa		13.64	□□□□□ -0.23
MSI2-217	ENST00000583705	PANK3	Q9H999	370 aa		13.64	□□□□□ -0.23
MSI2-217	ENST00000583705	TMEM87A	Q8NBN3	555 aa		13.64	□□□□□ -0.23
MSI2-217	ENST00000583705	COG6	Q9Y2V7	657 aa		13.63	□□□□□ -0.23
MSI2-217	ENST00000583705	RDX	P35241	583 aa	Known RBP	13.63	□□□□□ -0.23
MSI2-217	ENST00000583705	DDX11L8	A8MPP1	907 aa		13.63	□□□□□ -0.23
MSI2-217	ENST00000583705	SMC3	Q9UQE7	1217 aa		13.63	□□□□□ -0.23
MSI2-217	ENST00000583705	FHAD1	B1AJZ9	1412 aa		13.63	□□□□□ -0.23
MSI2-217	ENST00000583705	CARMIL1	Q5VZK9	1371 aa		13.63	□□□□□ -0.23
MSI2-217	ENST00000583705	OLFM4	Q6UX06	510 aa		13.62	□□□□□ -0.23
MSI2-217	ENST00000583705	DDX54	Q8TDD1	881 aa	Known RBP	13.62	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms