RNA–Protein interactions for RNA: ENST00000582792.5

SS18-222, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 531 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-222ENST00000582792 RBM33Q96EV2 1170 aaKnown RBP21.11■□□□□ 0.97
SS18-222ENST00000582792 ANKRD50Q9ULJ7 1429 aa21.11■□□□□ 0.97
SS18-222ENST00000582792 ZFYVE9O95405 1425 aa21.09■□□□□ 0.97
SS18-222ENST00000582792 BCANQ96GW7 911 aa21.08■□□□□ 0.97
SS18-222ENST00000582792 FAM50AQ14320 339 aaKnown RBP21.07■□□□□ 0.96
SS18-222ENST00000582792 MSH6P52701 1360 aa21.07■□□□□ 0.96
SS18-222ENST00000582792 PLEKHG1Q9ULL1 1385 aa21.07■□□□□ 0.96
SS18-222ENST00000582792 MYO5BQ9ULV0 1848 aa21.06■□□□□ 0.96
SS18-222ENST00000582792 GCC2Q8IWJ2 1684 aa21.06■□□□□ 0.96
SS18-222ENST00000582792 TMEM131LA2VDJ0 1609 aa21.05■□□□□ 0.96
SS18-222ENST00000582792 RIMS2Q9UQ26 1411 aa21.04■□□□□ 0.96
SS18-222ENST00000582792 CHD2O14647 1828 aaKnown RBP21.04■□□□□ 0.96
SS18-222ENST00000582792 UNC13BO14795 1591 aa21.02■□□□□ 0.96
SS18-222ENST00000582792 HDGFP51858 240 aaKnown RBP21.02■□□□□ 0.96
SS18-222ENST00000582792 SLAIN2Q9P270 581 aa21.02■□□□□ 0.96
SS18-222ENST00000582792 PPP1R15AO75807 674 aaPredicted RBP21.01■□□□□ 0.95
SS18-222ENST00000582792 POTEAQ6S8J7 498 aa21.01■□□□□ 0.95
SS18-222ENST00000582792 PHLPP1O60346 1717 aa21.01■□□□□ 0.95
SS18-222ENST00000582792 TBX22Q9Y458 520 aa20.99■□□□□ 0.95
SS18-222ENST00000582792 NCOA3Q9Y6Q9 1424 aa20.98■□□□□ 0.95
SS18-222ENST00000582792 E9PCH4 1651 aa20.97■□□□□ 0.95
SS18-222ENST00000582792 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.97■□□□□ 0.95
SS18-222ENST00000582792 JCADQ9P266 1359 aa20.97■□□□□ 0.95
SS18-222ENST00000582792 DIP2AQ14689 1571 aa20.95■□□□□ 0.94
SS18-222ENST00000582792 CHGAP10645 457 aaKnown RBP20.95■□□□□ 0.94
SS18-222ENST00000582792 ADAMTS13Q76LX8 1427 aa20.95■□□□□ 0.94
SS18-222ENST00000582792 COL16A1Q07092 1604 aaPredicted RBP20.94■□□□□ 0.94
SS18-222ENST00000582792 IQGAP3Q86VI3 1631 aa20.93■□□□□ 0.94
SS18-222ENST00000582792 ROCK1Q13464 1354 aa20.93■□□□□ 0.94
SS18-222ENST00000582792 PIK3R4Q99570 1358 aa20.93■□□□□ 0.94
SS18-222ENST00000582792 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.9■□□□□ 0.94
SS18-222ENST00000582792 NUTM2DQ5VT03 806 aaPredicted RBP20.9■□□□□ 0.94
SS18-222ENST00000582792 C14orf37Q86TY3 774 aa20.9■□□□□ 0.94
SS18-222ENST00000582792 CADPS2Q86UW7 1296 aa20.89■□□□□ 0.93
SS18-222ENST00000582792 C19orf44Q9H6X5 657 aa20.88■□□□□ 0.93
SS18-222ENST00000582792 TRPM2O94759 1503 aa20.88■□□□□ 0.93
SS18-222ENST00000582792 AHDC1Q5TGY3 1603 aaPredicted RBP20.87■□□□□ 0.93
SS18-222ENST00000582792 SPATA31A6Q5VVP1 1343 aa20.86■□□□□ 0.93
SS18-222ENST00000582792 ATF3P18847 181 aa20.86■□□□□ 0.93
SS18-222ENST00000582792 SETD1AO15047 1707 aaKnown RBP20.86■□□□□ 0.93
SS18-222ENST00000582792 LRP6O75581 1613 aa20.86■□□□□ 0.93
SS18-222ENST00000582792 NUP155O75694 1391 aa20.85■□□□□ 0.93
SS18-222ENST00000582792 PTPRUQ92729 1446 aa20.84■□□□□ 0.93
SS18-222ENST00000582792 SHPRHQ149N8 1683 aa20.83■□□□□ 0.93
SS18-222ENST00000582792 AMOTL2Q9Y2J4 779 aa20.83■□□□□ 0.93
SS18-222ENST00000582792 DCCP43146 1447 aa20.8■□□□□ 0.92
SS18-222ENST00000582792 NRXN3Q9Y4C0 1643 aa20.8■□□□□ 0.92
SS18-222ENST00000582792 MEX3CQ5U5Q3 659 aaKnown RBP20.8■□□□□ 0.92
SS18-222ENST00000582792 SETBP1Q9Y6X0 1596 aa20.8■□□□□ 0.92
SS18-222ENST00000582792 XRN1Q8IZH2 1706 aaKnown RBP20.79■□□□□ 0.92
SS18-222ENST00000582792 BRINP3Q76B58 766 aa20.79■□□□□ 0.92
SS18-222ENST00000582792 SPHKAPQ2M3C7 1700 aa20.78■□□□□ 0.92
SS18-222ENST00000582792 ZNF772Q68DY9 489 aaPredicted RBP20.78■□□□□ 0.92
SS18-222ENST00000582792 ITGAEP38570 1179 aa20.77■□□□□ 0.92
SS18-222ENST00000582792 ASXL1Q8IXJ9 1541 aa20.75■□□□□ 0.91
SS18-222ENST00000582792 MST1RQ04912 1400 aa20.73■□□□□ 0.91
SS18-222ENST00000582792 ZNF326Q5BKZ1 582 aaKnown RBP20.73■□□□□ 0.91
SS18-222ENST00000582792 METP08581 1390 aa20.72■□□□□ 0.91
SS18-222ENST00000582792 SETD5Q9C0A6 1442 aa20.72■□□□□ 0.91
SS18-222ENST00000582792 NHSL1Q5SYE7 1610 aa20.71■□□□□ 0.91
SS18-222ENST00000582792 TRIM52Q96A61 297 aa20.7■□□□□ 0.9
SS18-222ENST00000582792 NEXMIFQ5QGS0 1516 aa20.69■□□□□ 0.9
SS18-222ENST00000582792 NUTM2BA6NNL0 878 aaPredicted RBP20.69■□□□□ 0.9
SS18-222ENST00000582792 NUTM2EB1AL46 878 aaPredicted RBP20.69■□□□□ 0.9
SS18-222ENST00000582792 NUTM2AQ8IVF1 878 aaPredicted RBP20.69■□□□□ 0.9
SS18-222ENST00000582792 ADGRL3Q9HAR2 1447 aa20.69■□□□□ 0.9
SS18-222ENST00000582792 CLTCL1P53675 1640 aa20.68■□□□□ 0.9
SS18-222ENST00000582792 RXRBP28702 533 aa20.68■□□□□ 0.9
SS18-222ENST00000582792 UPF1Q92900 1129 aaKnown RBP eCLIP20.68■□□□□ 0.9
SS18-222ENST00000582792 LRRC59Q96AG4 307 aaKnown RBP20.66■□□□□ 0.9
SS18-222ENST00000582792 CDK12Q9NYV4 1490 aaPredicted RBP20.66■□□□□ 0.9
SS18-222ENST00000582792 NALCNQ8IZF0 1738 aa20.66■□□□□ 0.9
SS18-222ENST00000582792 AFF2P51816 1311 aa20.65■□□□□ 0.9
SS18-222ENST00000582792 PPARGC1BQ86YN6 1023 aaKnown RBP20.65■□□□□ 0.9
SS18-222ENST00000582792 KIF1BO60333 1816 aa20.63■□□□□ 0.89
SS18-222ENST00000582792 PNPLA6Q8IY17 1366 aa20.62■□□□□ 0.89
SS18-222ENST00000582792 DDX17Q92841 729 aaKnown RBP20.61■□□□□ 0.89
SS18-222ENST00000582792 NAIPQ13075 1403 aa20.6■□□□□ 0.89
SS18-222ENST00000582792 PTCH1Q13635 1447 aa20.6■□□□□ 0.89
SS18-222ENST00000582792 C1orf167Q5SNV9 1468 aa20.59■□□□□ 0.89
SS18-222ENST00000582792 LAMC1P11047 1609 aa20.58■□□□□ 0.89
SS18-222ENST00000582792 C8orf37Q96NL8 207 aa20.57■□□□□ 0.88
SS18-222ENST00000582792 RRBP1Q9P2E9 1410 aaKnown RBP20.57■□□□□ 0.88
SS18-222ENST00000582792 VGFO15240 615 aaPredicted RBP20.56■□□□□ 0.88
SS18-222ENST00000582792 PRAG1Q86YV5 1406 aa20.55■□□□□ 0.88
SS18-222ENST00000582792 QTRT2Q9H974 415 aaKnown RBP20.55■□□□□ 0.88
SS18-222ENST00000582792 ROBO2Q9HCK4 1378 aa20.55■□□□□ 0.88
SS18-222ENST00000582792 RGS12O14924 1447 aa20.54■□□□□ 0.88
SS18-222ENST00000582792 RBM6P78332 1123 aaKnown RBP20.54■□□□□ 0.88
SS18-222ENST00000582792 SOS2Q07890 1332 aaPredicted RBP20.53■□□□□ 0.88
SS18-222ENST00000582792 ORAI2Q96SN7 254 aa20.52■□□□□ 0.88
SS18-222ENST00000582792 RPGRIP1LQ68CZ1 1315 aa20.52■□□□□ 0.87
SS18-222ENST00000582792 ADAMTS2O95450 1211 aa20.5■□□□□ 0.87
SS18-222ENST00000582792 NGLY1Q96IV0 654 aa20.5■□□□□ 0.87
SS18-222ENST00000582792 HFM1A2PYH4 1435 aa20.5■□□□□ 0.87
SS18-222ENST00000582792 PPLO60437 1756 aa20.49■□□□□ 0.87
SS18-222ENST00000582792 SLC4A1APQ9BWU0 796 aaKnown RBP20.47■□□□□ 0.87
SS18-222ENST00000582792 COL22A1Q8NFW1 1626 aaPredicted RBP20.46■□□□□ 0.87
SS18-222ENST00000582792 CDC42BPGQ6DT37 1551 aa20.44■□□□□ 0.86
SS18-222ENST00000582792 USP21Q9UK80 565 aa20.44■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms