RNA–Protein interactions for RNA: ENST00000581514.1

SCN4A-202, Transcript of sodium voltage-gated channel alpha subunit 4, humanhuman

TSL 3

Gene SCN4A, Length 567 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4A-202ENST00000581514 FAM135BQ49AJ0 1406 aa22.95■■□□□ 1.26
SCN4A-202ENST00000581514 PROSER2Q86WR7 435 aaPredicted RBP22.94■■□□□ 1.26
SCN4A-202ENST00000581514 NKTRP30414 1462 aaKnown RBP22.93■■□□□ 1.26
SCN4A-202ENST00000581514 ZFYVE9O95405 1425 aa22.93■■□□□ 1.26
SCN4A-202ENST00000581514 BCANQ96GW7 911 aa22.93■■□□□ 1.26
SCN4A-202ENST00000581514 RBM33Q96EV2 1170 aaKnown RBP22.92■■□□□ 1.26
SCN4A-202ENST00000581514 TMEM131LA2VDJ0 1609 aa22.92■■□□□ 1.26
SCN4A-202ENST00000581514 RIMS2Q9UQ26 1411 aa22.91■■□□□ 1.26
SCN4A-202ENST00000581514 PLEKHG1Q9ULL1 1385 aa22.9■■□□□ 1.26
SCN4A-202ENST00000581514 ROCK1Q13464 1354 aa22.89■■□□□ 1.26
SCN4A-202ENST00000581514 E9PCH4 1651 aa22.89■■□□□ 1.25
SCN4A-202ENST00000581514 ROBO1Q9Y6N7 1651 aa22.89■■□□□ 1.25
SCN4A-202ENST00000581514 CHD2O14647 1828 aaKnown RBP22.88■■□□□ 1.25
SCN4A-202ENST00000581514 HDGFP51858 240 aaKnown RBP22.88■■□□□ 1.25
SCN4A-202ENST00000581514 PPP1R15AO75807 674 aaPredicted RBP22.87■■□□□ 1.25
SCN4A-202ENST00000581514 IQGAP3Q86VI3 1631 aa22.86■■□□□ 1.25
SCN4A-202ENST00000581514 MSH6P52701 1360 aa22.85■■□□□ 1.25
SCN4A-202ENST00000581514 CHGAP10645 457 aaKnown RBP22.84■■□□□ 1.25
SCN4A-202ENST00000581514 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.83■■□□□ 1.25
SCN4A-202ENST00000581514 RGS17Q9UGC6 210 aaPredicted RBP22.83■■□□□ 1.25
SCN4A-202ENST00000581514 TBX22Q9Y458 520 aa22.82■■□□□ 1.24
SCN4A-202ENST00000581514 NUP155O75694 1391 aa22.79■■□□□ 1.24
SCN4A-202ENST00000581514 SLAIN2Q9P270 581 aa22.79■■□□□ 1.24
SCN4A-202ENST00000581514 NUTM2DQ5VT03 806 aaPredicted RBP22.78■■□□□ 1.24
SCN4A-202ENST00000581514 ADAMTS13Q76LX8 1427 aa22.78■■□□□ 1.24
SCN4A-202ENST00000581514 DIP2AQ14689 1571 aa22.77■■□□□ 1.24
SCN4A-202ENST00000581514 ITGAEP38570 1179 aa22.77■■□□□ 1.24
SCN4A-202ENST00000581514 PHLPP1O60346 1717 aa22.77■■□□□ 1.23
SCN4A-202ENST00000581514 NCOA3Q9Y6Q9 1424 aa22.76■■□□□ 1.23
SCN4A-202ENST00000581514 PIK3R4Q99570 1358 aa22.74■■□□□ 1.23
SCN4A-202ENST00000581514 PPARGC1BQ86YN6 1023 aaKnown RBP22.72■■□□□ 1.23
SCN4A-202ENST00000581514 C14orf37Q86TY3 774 aa22.7■■□□□ 1.22
SCN4A-202ENST00000581514 TRPM2O94759 1503 aa22.7■■□□□ 1.22
SCN4A-202ENST00000581514 SPHKAPQ2M3C7 1700 aa22.7■■□□□ 1.22
SCN4A-202ENST00000581514 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.7■■□□□ 1.22
SCN4A-202ENST00000581514 JCADQ9P266 1359 aa22.69■■□□□ 1.22
SCN4A-202ENST00000581514 POTEAQ6S8J7 498 aa22.69■■□□□ 1.22
SCN4A-202ENST00000581514 COL16A1Q07092 1604 aaPredicted RBP22.68■■□□□ 1.22
SCN4A-202ENST00000581514 PTPRUQ92729 1446 aa22.67■■□□□ 1.22
SCN4A-202ENST00000581514 C19orf44Q9H6X5 657 aa22.67■■□□□ 1.22
SCN4A-202ENST00000581514 CADPS2Q86UW7 1296 aa22.66■■□□□ 1.22
SCN4A-202ENST00000581514 AMOTL2Q9Y2J4 779 aa22.66■■□□□ 1.22
SCN4A-202ENST00000581514 NRXN3Q9Y4C0 1643 aa22.65■■□□□ 1.22
SCN4A-202ENST00000581514 ATF3P18847 181 aa22.64■■□□□ 1.21
SCN4A-202ENST00000581514 SETBP1Q9Y6X0 1596 aa22.63■■□□□ 1.21
SCN4A-202ENST00000581514 AHDC1Q5TGY3 1603 aaPredicted RBP22.62■■□□□ 1.21
SCN4A-202ENST00000581514 XRN1Q8IZH2 1706 aaKnown RBP22.62■■□□□ 1.21
SCN4A-202ENST00000581514 ZNF326Q5BKZ1 582 aaKnown RBP22.61■■□□□ 1.21
SCN4A-202ENST00000581514 CLTCL1P53675 1640 aa22.59■■□□□ 1.21
SCN4A-202ENST00000581514 RRBP1Q9P2E9 1410 aaKnown RBP22.58■■□□□ 1.21
SCN4A-202ENST00000581514 SPATA31A6Q5VVP1 1343 aa22.57■■□□□ 1.2
SCN4A-202ENST00000581514 DCCP43146 1447 aa22.57■■□□□ 1.2
SCN4A-202ENST00000581514 LRP6O75581 1613 aa22.57■■□□□ 1.2
SCN4A-202ENST00000581514 SHPRHQ149N8 1683 aa22.56■■□□□ 1.2
SCN4A-202ENST00000581514 METP08581 1390 aa22.56■■□□□ 1.2
SCN4A-202ENST00000581514 BRINP3Q76B58 766 aa22.56■■□□□ 1.2
SCN4A-202ENST00000581514 NEXMIFQ5QGS0 1516 aa22.56■■□□□ 1.2
SCN4A-202ENST00000581514 NAIPQ13075 1403 aa22.56■■□□□ 1.2
SCN4A-202ENST00000581514 KIF1BO60333 1816 aa22.54■■□□□ 1.2
SCN4A-202ENST00000581514 SETD1AO15047 1707 aaKnown RBP22.52■■□□□ 1.2
SCN4A-202ENST00000581514 ASXL1Q8IXJ9 1541 aa22.52■■□□□ 1.19
SCN4A-202ENST00000581514 MST1RQ04912 1400 aa22.51■■□□□ 1.19
SCN4A-202ENST00000581514 MEX3CQ5U5Q3 659 aaKnown RBP22.51■■□□□ 1.19
SCN4A-202ENST00000581514 NHSL1Q5SYE7 1610 aa22.48■■□□□ 1.19
SCN4A-202ENST00000581514 ADGRL3Q9HAR2 1447 aa22.48■■□□□ 1.19
SCN4A-202ENST00000581514 ZNF772Q68DY9 489 aaPredicted RBP22.47■■□□□ 1.19
SCN4A-202ENST00000581514 NALCNQ8IZF0 1738 aa22.47■■□□□ 1.19
SCN4A-202ENST00000581514 SETD5Q9C0A6 1442 aa22.46■■□□□ 1.19
SCN4A-202ENST00000581514 TRIM52Q96A61 297 aa22.45■■□□□ 1.18
SCN4A-202ENST00000581514 HFM1A2PYH4 1435 aa22.45■■□□□ 1.18
SCN4A-202ENST00000581514 NUTM2BA6NNL0 878 aaPredicted RBP22.43■■□□□ 1.18
SCN4A-202ENST00000581514 NUTM2EB1AL46 878 aaPredicted RBP22.43■■□□□ 1.18
SCN4A-202ENST00000581514 NUTM2AQ8IVF1 878 aaPredicted RBP22.43■■□□□ 1.18
SCN4A-202ENST00000581514 VGFO15240 615 aaPredicted RBP22.42■■□□□ 1.18
SCN4A-202ENST00000581514 PTCH1Q13635 1447 aa22.4■■□□□ 1.18
SCN4A-202ENST00000581514 LRRC59Q96AG4 307 aaKnown RBP22.4■■□□□ 1.18
SCN4A-202ENST00000581514 SLC4A1APQ9BWU0 796 aaKnown RBP22.4■■□□□ 1.18
SCN4A-202ENST00000581514 DDX17Q92841 729 aaKnown RBP22.39■■□□□ 1.17
SCN4A-202ENST00000581514 PPLO60437 1756 aa22.38■■□□□ 1.17
SCN4A-202ENST00000581514 RPGRIP1LQ68CZ1 1315 aa22.38■■□□□ 1.17
SCN4A-202ENST00000581514 ROBO2Q9HCK4 1378 aa22.38■■□□□ 1.17
SCN4A-202ENST00000581514 C1orf167Q5SNV9 1468 aa22.37■■□□□ 1.17
SCN4A-202ENST00000581514 PRAG1Q86YV5 1406 aa22.36■■□□□ 1.17
SCN4A-202ENST00000581514 PNPLA6Q8IY17 1366 aa22.36■■□□□ 1.17
SCN4A-202ENST00000581514 AFF2P51816 1311 aa22.35■■□□□ 1.17
SCN4A-202ENST00000581514 RXRBP28702 533 aa22.35■■□□□ 1.17
SCN4A-202ENST00000581514 LAMC1P11047 1609 aa22.34■■□□□ 1.17
SCN4A-202ENST00000581514 CDK12Q9NYV4 1490 aaPredicted RBP22.31■■□□□ 1.16
SCN4A-202ENST00000581514 UPF1Q92900 1129 aaKnown RBP eCLIP22.31■■□□□ 1.16
SCN4A-202ENST00000581514 FOXD1Q16676 465 aa22.3■■□□□ 1.16
SCN4A-202ENST00000581514 ORAI2Q96SN7 254 aa22.3■■□□□ 1.16
SCN4A-202ENST00000581514 C8orf37Q96NL8 207 aa22.29■■□□□ 1.16
SCN4A-202ENST00000581514 SOS2Q07890 1332 aaPredicted RBP22.28■■□□□ 1.16
SCN4A-202ENST00000581514 CCDC144AA2RUR9 1427 aa22.25■■□□□ 1.15
SCN4A-202ENST00000581514 ADGRF5Q8IZF2 1346 aa22.25■■□□□ 1.15
SCN4A-202ENST00000581514 ADAMTS2O95450 1211 aa22.24■■□□□ 1.15
SCN4A-202ENST00000581514 QTRT2Q9H974 415 aaKnown RBP22.24■■□□□ 1.15
SCN4A-202ENST00000581514 CDC42BPGQ6DT37 1551 aa22.24■■□□□ 1.15
SCN4A-202ENST00000581514 IFT172Q9UG01 1749 aa22.23■■□□□ 1.15
SCN4A-202ENST00000581514 SPATA31E1Q6ZUB1 1445 aa22.23■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms