RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 PRAG1Q86YV5 1406 aa14.89□□□□□ -0.03
SS18-217ENST00000580958 PIK3C2BO00750 1634 aa14.88□□□□□ -0.03
SS18-217ENST00000580958 CNTLNQ9NXG0 1405 aa14.88□□□□□ -0.03
SS18-217ENST00000580958 MADDQ8WXG6 1647 aa14.88□□□□□ -0.03
SS18-217ENST00000580958 MYO5BQ9ULV0 1848 aa14.87□□□□□ -0.03
SS18-217ENST00000580958 NOS1P29475 1434 aa14.87□□□□□ -0.03
SS18-217ENST00000580958 EIF4G2P78344 907 aaKnown RBP eCLIP14.87□□□□□ -0.03
SS18-217ENST00000580958 ADGRB3O60242 1522 aa14.87□□□□□ -0.03
SS18-217ENST00000580958 PPLO60437 1756 aa14.86□□□□□ -0.03
SS18-217ENST00000580958 LAMC1P11047 1609 aa14.84□□□□□ -0.03
SS18-217ENST00000580958 MLECQ14165 292 aa14.84□□□□□ -0.03
SS18-217ENST00000580958 KIAA1210Q9ULL0 1709 aa14.82□□□□□ -0.04
SS18-217ENST00000580958 USP47Q96K76 1375 aa14.82□□□□□ -0.04
SS18-217ENST00000580958 ERVK-7P63135 1459 aa14.81□□□□□ -0.04
SS18-217ENST00000580958 CHGAP10645 457 aaKnown RBP14.8□□□□□ -0.04
SS18-217ENST00000580958 CARD11Q9BXL7 1154 aa14.8□□□□□ -0.04
SS18-217ENST00000580958 ROCK2O75116 1388 aaKnown RBP14.8□□□□□ -0.04
SS18-217ENST00000580958 MYOM2P54296 1465 aa14.8□□□□□ -0.04
SS18-217ENST00000580958 ARID4BQ4LE39 1312 aaPredicted RBP14.79□□□□□ -0.04
SS18-217ENST00000580958 IQGAP1P46940 1657 aa14.78□□□□□ -0.04
SS18-217ENST00000580958 SPATA31D1Q6ZQQ2 1576 aa14.78□□□□□ -0.04
SS18-217ENST00000580958 DDX10Q13206 875 aaKnown RBP14.78□□□□□ -0.04
SS18-217ENST00000580958 FER1L4A9Z1Z3 1794 aa14.78□□□□□ -0.04
SS18-217ENST00000580958 TMEM131LA2VDJ0 1609 aa14.77□□□□□ -0.04
SS18-217ENST00000580958 GPRASP1Q5JY77 1395 aa14.77□□□□□ -0.04
SS18-217ENST00000580958 MYCNP04198 464 aaPredicted RBP14.77□□□□□ -0.05
SS18-217ENST00000580958 NBPF1Q3BBV0 1214 aa14.77□□□□□ -0.05
SS18-217ENST00000580958 MIER1Q8N108 512 aa14.77□□□□□ -0.05
SS18-217ENST00000580958 STAC3Q96MF2 364 aa14.77□□□□□ -0.05
SS18-217ENST00000580958 ABCB7O75027 752 aa14.76□□□□□ -0.05
SS18-217ENST00000580958 FBXO31Q5XUX0 539 aaPredicted RBP14.76□□□□□ -0.05
SS18-217ENST00000580958 ESF1Q9H501 851 aaKnown RBP14.75□□□□□ -0.05
SS18-217ENST00000580958 NEXMIFQ5QGS0 1516 aa14.75□□□□□ -0.05
SS18-217ENST00000580958 CCDC7Q96M83 1385 aa14.74□□□□□ -0.05
SS18-217ENST00000580958 WASHC2AQ641Q2 1341 aa14.74□□□□□ -0.05
SS18-217ENST00000580958 IDI1Q13907 227 aa14.74□□□□□ -0.05
SS18-217ENST00000580958 NRXN1Q9ULB1 1477 aa14.74□□□□□ -0.05
SS18-217ENST00000580958 C11orf95C9JLR9 678 aaPredicted RBP14.73□□□□□ -0.05
SS18-217ENST00000580958 SLC52A1Q9NWF4 448 aa14.73□□□□□ -0.05
SS18-217ENST00000580958 RPGRIP1LQ68CZ1 1315 aa14.72□□□□□ -0.05
SS18-217ENST00000580958 ADGRF5Q8IZF2 1346 aa14.72□□□□□ -0.05
SS18-217ENST00000580958 ZMYM3Q14202 1370 aa14.72□□□□□ -0.05
SS18-217ENST00000580958 C3P01024 1663 aa14.71□□□□□ -0.05
SS18-217ENST00000580958 KIF7Q2M1P5 1343 aa14.69□□□□□ -0.06
SS18-217ENST00000580958 ST20-MTHFSA0A0A6YYL1 179 aa14.69□□□□□ -0.06
SS18-217ENST00000580958 SETBP1Q9Y6X0 1596 aa14.68□□□□□ -0.06
SS18-217ENST00000580958 PIK3C2GO75747 1445 aa14.67□□□□□ -0.06
SS18-217ENST00000580958 CFAP70Q5T0N1 1121 aa14.67□□□□□ -0.06
SS18-217ENST00000580958 SCAF11Q99590 1463 aaKnown RBP14.67□□□□□ -0.06
SS18-217ENST00000580958 RIMS1Q86UR5 1692 aaKnown RBP14.65□□□□□ -0.06
SS18-217ENST00000580958 TNRQ92752 1358 aa14.65□□□□□ -0.06
SS18-217ENST00000580958 NUTM2DQ5VT03 806 aaPredicted RBP14.65□□□□□ -0.06
SS18-217ENST00000580958 UBR1Q8IWV7 1749 aa14.65□□□□□ -0.06
SS18-217ENST00000580958 KDM5AP29375 1690 aaKnown RBP14.65□□□□□ -0.06
SS18-217ENST00000580958 A2ML1A8K2U0 1454 aa14.64□□□□□ -0.07
SS18-217ENST00000580958 POLR3GLQ9BT43 218 aa14.64□□□□□ -0.07
SS18-217ENST00000580958 STAG3Q9UJ98 1225 aa14.64□□□□□ -0.07
SS18-217ENST00000580958 ZFYVE9O95405 1425 aa14.64□□□□□ -0.07
SS18-217ENST00000580958 MYO3AQ8NEV4 1616 aa14.63□□□□□ -0.07
SS18-217ENST00000580958 VGFO15240 615 aaPredicted RBP14.63□□□□□ -0.07
SS18-217ENST00000580958 FOXD4L1Q9NU39 408 aa14.63□□□□□ -0.07
SS18-217ENST00000580958 ADGRB1O14514 1584 aa14.62□□□□□ -0.07
SS18-217ENST00000580958 C14orf93Q9H972 538 aaKnown RBP14.62□□□□□ -0.07
SS18-217ENST00000580958 TESK2Q96S53 571 aa14.61□□□□□ -0.07
SS18-217ENST00000580958 ADAMTSL3P82987 1691 aa14.61□□□□□ -0.07
SS18-217ENST00000580958 ARHGEF28Q8N1W1 1705 aaKnown RBP14.61□□□□□ -0.07
SS18-217ENST00000580958 EIF3AQ14152 1382 aaKnown RBP14.6□□□□□ -0.07
SS18-217ENST00000580958 RIMS2Q9UQ26 1411 aa14.6□□□□□ -0.07
SS18-217ENST00000580958 QRICH2Q9H0J4 1663 aa14.6□□□□□ -0.07
SS18-217ENST00000580958 SETD1AO15047 1707 aaKnown RBP14.59□□□□□ -0.07
SS18-217ENST00000580958 ANP32CO43423 234 aa14.59□□□□□ -0.07
SS18-217ENST00000580958 CEBPAP49715 358 aaPredicted RBP14.59□□□□□ -0.07
SS18-217ENST00000580958 ASXL1Q8IXJ9 1541 aa14.59□□□□□ -0.07
SS18-217ENST00000580958 DISP3Q9P2K9 1392 aa14.59□□□□□ -0.07
SS18-217ENST00000580958 NLRP1Q9C000 1473 aa14.57□□□□□ -0.08
SS18-217ENST00000580958 ALKQ9UM73 1620 aa14.57□□□□□ -0.08
SS18-217ENST00000580958 TMEM132EQ6IEE7 984 aa14.56□□□□□ -0.08
SS18-217ENST00000580958 NRXN3Q9Y4C0 1643 aa14.55□□□□□ -0.08
SS18-217ENST00000580958 TMF1P82094 1093 aa14.55□□□□□ -0.08
SS18-217ENST00000580958 MYOM1P52179 1685 aa14.54□□□□□ -0.08
SS18-217ENST00000580958 TRAK1Q9UPV9 953 aa14.53□□□□□ -0.08
SS18-217ENST00000580958 PTPRMP28827 1452 aa14.52□□□□□ -0.08
SS18-217ENST00000580958 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.52□□□□□ -0.09
SS18-217ENST00000580958 SETD1BQ9UPS6 1966 aaKnown RBP14.51□□□□□ -0.09
SS18-217ENST00000580958 CENPJQ9HC77 1338 aaPredicted RBP14.51□□□□□ -0.09
SS18-217ENST00000580958 TMEM2Q9UHN6 1383 aa14.5□□□□□ -0.09
SS18-217ENST00000580958 CCER2I3L3R5 266 aa14.5□□□□□ -0.09
SS18-217ENST00000580958 YTHDC1Q96MU7 727 aaKnown RBP14.5□□□□□ -0.09
SS18-217ENST00000580958 YTHDC2Q9H6S0 1430 aaKnown RBP14.49□□□□□ -0.09
SS18-217ENST00000580958 SBNO2Q9Y2G9 1366 aa14.49□□□□□ -0.09
SS18-217ENST00000580958 CEP170BQ9Y4F5 1589 aaPredicted RBP14.49□□□□□ -0.09
SS18-217ENST00000580958 ZNF142P52746 1687 aaPredicted RBP14.49□□□□□ -0.09
SS18-217ENST00000580958 KNDC1Q76NI1 1749 aa14.48□□□□□ -0.09
SS18-217ENST00000580958 SLIT1O75093 1534 aa14.47□□□□□ -0.09
SS18-217ENST00000580958 ARHGAP23Q9P227 1491 aa14.47□□□□□ -0.09
SS18-217ENST00000580958 HDGFP51858 240 aaKnown RBP14.47□□□□□ -0.09
SS18-217ENST00000580958 CDCA8Q53HL2 280 aa14.47□□□□□ -0.09
SS18-217ENST00000580958 PRKRIP1Q9H875 184 aaPredicted RBP14.47□□□□□ -0.09
SS18-217ENST00000580958 STK26Q9P289 416 aa14.47□□□□□ -0.09
SS18-217ENST00000580958 SLC24A1O60721 1099 aa14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms