RNA–Protein interactions for RNA: ENST00000575513.1

CIITA-210, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 516 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-210ENST00000575513 IQSEC2Q5JU85 1478 aa20.17■□□□□ 0.82
CIITA-210ENST00000575513 SPHKAPQ2M3C7 1700 aa20.16■□□□□ 0.82
CIITA-210ENST00000575513 ILDR1Q86SU0 546 aaPredicted RBP20.16■□□□□ 0.82
CIITA-210ENST00000575513 PLEKHG1Q9ULL1 1385 aa20.13■□□□□ 0.81
CIITA-210ENST00000575513 PPP1R15AO75807 674 aaPredicted RBP20.13■□□□□ 0.81
CIITA-210ENST00000575513 CPS1P31327 1500 aa20.12■□□□□ 0.81
CIITA-210ENST00000575513 FOXD1Q16676 465 aa20.09■□□□□ 0.81
CIITA-210ENST00000575513 ZNF326Q5BKZ1 582 aaKnown RBP20.09■□□□□ 0.81
CIITA-210ENST00000575513 TBX22Q9Y458 520 aa20.09■□□□□ 0.81
CIITA-210ENST00000575513 RPGRIP1LQ68CZ1 1315 aa20.08■□□□□ 0.81
CIITA-210ENST00000575513 BCANQ96GW7 911 aa20.08■□□□□ 0.81
CIITA-210ENST00000575513 CLTCL1P53675 1640 aa20.08■□□□□ 0.8
CIITA-210ENST00000575513 SLC26A8Q96RN1 970 aa20.07■□□□□ 0.8
CIITA-210ENST00000575513 MYO5BQ9ULV0 1848 aa20.06■□□□□ 0.8
CIITA-210ENST00000575513 CCDC144AA2RUR9 1427 aa20.06■□□□□ 0.8
CIITA-210ENST00000575513 KCNA6P17658 529 aa20.06■□□□□ 0.8
CIITA-210ENST00000575513 VGFO15240 615 aaPredicted RBP20.03■□□□□ 0.8
CIITA-210ENST00000575513 NUTM2DQ5VT03 806 aaPredicted RBP20.03■□□□□ 0.8
CIITA-210ENST00000575513 PIK3R4Q99570 1358 aa20.02■□□□□ 0.8
CIITA-210ENST00000575513 KIF1BO60333 1816 aa20.01■□□□□ 0.79
CIITA-210ENST00000575513 ADAMTS13Q76LX8 1427 aa20.01■□□□□ 0.79
CIITA-210ENST00000575513 LRRC7Q96NW7 1537 aa20■□□□□ 0.79
CIITA-210ENST00000575513 DIP2AQ14689 1571 aa19.99■□□□□ 0.79
CIITA-210ENST00000575513 NEXMIFQ5QGS0 1516 aa19.98■□□□□ 0.79
CIITA-210ENST00000575513 SPATA31E1Q6ZUB1 1445 aa19.98■□□□□ 0.79
CIITA-210ENST00000575513 ANKRD30BQ9BXX2 1392 aa19.97■□□□□ 0.79
CIITA-210ENST00000575513 UBAP1LF5GYI3 381 aa19.97■□□□□ 0.79
CIITA-210ENST00000575513 TOM1O60784 492 aa19.97■□□□□ 0.79
CIITA-210ENST00000575513 SETBP1Q9Y6X0 1596 aa19.96■□□□□ 0.79
CIITA-210ENST00000575513 STRCP1A6NGW2 1772 aa19.96■□□□□ 0.79
CIITA-210ENST00000575513 NKTRP30414 1462 aaKnown RBP19.95■□□□□ 0.78
CIITA-210ENST00000575513 TRIM26Q12899 539 aaPredicted RBP19.95■□□□□ 0.78
CIITA-210ENST00000575513 PROSER2Q86WR7 435 aaPredicted RBP19.94■□□□□ 0.78
CIITA-210ENST00000575513 SENP3Q9H4L4 574 aaPredicted RBP19.94■□□□□ 0.78
CIITA-210ENST00000575513 NWD1Q149M9 1564 aa19.94■□□□□ 0.78
CIITA-210ENST00000575513 RGL3Q3MIN7 710 aa19.93■□□□□ 0.78
CIITA-210ENST00000575513 NCOA3Q9Y6Q9 1424 aa19.92■□□□□ 0.78
CIITA-210ENST00000575513 TMEM94Q12767 1356 aa19.91■□□□□ 0.78
CIITA-210ENST00000575513 AMOTL2Q9Y2J4 779 aa19.9■□□□□ 0.78
CIITA-210ENST00000575513 CHD2O14647 1828 aaKnown RBP19.9■□□□□ 0.78
CIITA-210ENST00000575513 NRXN3Q9Y4C0 1643 aa19.89■□□□□ 0.77
CIITA-210ENST00000575513 METP08581 1390 aa19.88■□□□□ 0.77
CIITA-210ENST00000575513 STAC3Q96MF2 364 aa19.88■□□□□ 0.77
CIITA-210ENST00000575513 PTPRUQ92729 1446 aa19.86■□□□□ 0.77
CIITA-210ENST00000575513 PPLO60437 1756 aa19.85■□□□□ 0.77
CIITA-210ENST00000575513 ADGRF5Q8IZF2 1346 aa19.85■□□□□ 0.77
CIITA-210ENST00000575513 ALKQ9UM73 1620 aa19.83■□□□□ 0.76
CIITA-210ENST00000575513 MSH6P52701 1360 aa19.83■□□□□ 0.76
CIITA-210ENST00000575513 C19orf44Q9H6X5 657 aa19.82■□□□□ 0.76
CIITA-210ENST00000575513 PIP4K2BP78356 416 aa19.81■□□□□ 0.76
CIITA-210ENST00000575513 RBM33Q96EV2 1170 aaKnown RBP19.81■□□□□ 0.76
CIITA-210ENST00000575513 PIK3C2GO75747 1445 aa19.81■□□□□ 0.76
CIITA-210ENST00000575513 PRAG1Q86YV5 1406 aa19.8■□□□□ 0.76
CIITA-210ENST00000575513 XIRP1Q702N8 1843 aaKnown RBP19.8■□□□□ 0.76
CIITA-210ENST00000575513 MYOM2P54296 1465 aa19.79■□□□□ 0.76
CIITA-210ENST00000575513 NRXN1Q9ULB1 1477 aa19.79■□□□□ 0.76
CIITA-210ENST00000575513 C14orf93Q9H972 538 aaKnown RBP19.79■□□□□ 0.76
CIITA-210ENST00000575513 XRN1Q8IZH2 1706 aaKnown RBP19.79■□□□□ 0.76
CIITA-210ENST00000575513 IFT172Q9UG01 1749 aa19.79■□□□□ 0.76
CIITA-210ENST00000575513 SCAF1Q9H7N4 1312 aaKnown RBP19.77■□□□□ 0.76
CIITA-210ENST00000575513 C14orf37Q86TY3 774 aa19.77■□□□□ 0.76
CIITA-210ENST00000575513 PTCH1Q13635 1447 aa19.76■□□□□ 0.75
CIITA-210ENST00000575513 FAM135BQ49AJ0 1406 aa19.76■□□□□ 0.75
CIITA-210ENST00000575513 CADPS2Q86UW7 1296 aa19.76■□□□□ 0.75
CIITA-210ENST00000575513 DCAF11Q8TEB1 546 aa19.75■□□□□ 0.75
CIITA-210ENST00000575513 SLAIN2Q9P270 581 aa19.75■□□□□ 0.75
CIITA-210ENST00000575513 SETD1AO15047 1707 aaKnown RBP19.75■□□□□ 0.75
CIITA-210ENST00000575513 ATF3P18847 181 aa19.74■□□□□ 0.75
CIITA-210ENST00000575513 DHX57Q6P158 1386 aaKnown RBP19.73■□□□□ 0.75
CIITA-210ENST00000575513 ABCC11Q96J66 1382 aa19.73■□□□□ 0.75
CIITA-210ENST00000575513 DCCP43146 1447 aa19.73■□□□□ 0.75
CIITA-210ENST00000575513 LRPPRCP42704 1394 aaKnown RBP19.72■□□□□ 0.75
CIITA-210ENST00000575513 HSPA1LP34931 641 aa19.72■□□□□ 0.75
CIITA-210ENST00000575513 SIRT1Q96EB6 747 aa19.72■□□□□ 0.75
CIITA-210ENST00000575513 ROBO2Q9HCK4 1378 aa19.71■□□□□ 0.75
CIITA-210ENST00000575513 TECPR2O15040 1411 aa19.71■□□□□ 0.75
CIITA-210ENST00000575513 CFAP70Q5T0N1 1121 aa19.71■□□□□ 0.75
CIITA-210ENST00000575513 KDM2AQ9Y2K7 1162 aa19.71■□□□□ 0.75
CIITA-210ENST00000575513 TMEM132EQ6IEE7 984 aa19.7■□□□□ 0.74
CIITA-210ENST00000575513 ADGRL3Q9HAR2 1447 aa19.69■□□□□ 0.74
CIITA-210ENST00000575513 YTHDC2Q9H6S0 1430 aaKnown RBP19.68■□□□□ 0.74
CIITA-210ENST00000575513 LAMC1P11047 1609 aa19.66■□□□□ 0.74
CIITA-210ENST00000575513 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.66■□□□□ 0.74
CIITA-210ENST00000575513 STK26Q9P289 416 aa19.66■□□□□ 0.74
CIITA-210ENST00000575513 ASXL1Q8IXJ9 1541 aa19.65■□□□□ 0.74
CIITA-210ENST00000575513 SIN3AQ96ST3 1273 aa19.64■□□□□ 0.73
CIITA-210ENST00000575513 WAPLQ7Z5K2 1190 aa19.61■□□□□ 0.73
CIITA-210ENST00000575513 L3MBTL2Q969R5 705 aa19.61■□□□□ 0.73
CIITA-210ENST00000575513 MST1RQ04912 1400 aa19.6■□□□□ 0.73
CIITA-210ENST00000575513 ADGRB1O14514 1584 aa19.6■□□□□ 0.73
CIITA-210ENST00000575513 ROBO1Q9Y6N7 1651 aa19.59■□□□□ 0.73
CIITA-210ENST00000575513 NEUROD1Q13562 356 aa19.59■□□□□ 0.73
CIITA-210ENST00000575513 BRINP3Q76B58 766 aa19.59■□□□□ 0.73
CIITA-210ENST00000575513 PCGF6Q9BYE7 350 aa19.59■□□□□ 0.73
CIITA-210ENST00000575513 KNDC1Q76NI1 1749 aa19.59■□□□□ 0.73
CIITA-210ENST00000575513 DLC1Q96QB1 1528 aa19.58■□□□□ 0.73
CIITA-210ENST00000575513 PLEKHH1Q9ULM0 1364 aa19.57■□□□□ 0.72
CIITA-210ENST00000575513 NALCNQ8IZF0 1738 aa19.56■□□□□ 0.72
CIITA-210ENST00000575513 PRAM1Q96QH2 718 aa19.55■□□□□ 0.72
CIITA-210ENST00000575513 C1orf167Q5SNV9 1468 aa19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms