RNA–Protein interactions for RNA: ENST00000575431.1

CCDC40-214, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-214ENST00000575431 RPGRIP1LQ68CZ1 1315 aa14.01□□□□□ -0.17
CCDC40-214ENST00000575431 ZFYVE9O95405 1425 aa14□□□□□ -0.17
CCDC40-214ENST00000575431 ANKRD30BQ9BXX2 1392 aa14□□□□□ -0.17
CCDC40-214ENST00000575431 LTKP29376 864 aa14□□□□□ -0.17
CCDC40-214ENST00000575431 ZNF326Q5BKZ1 582 aaKnown RBP14□□□□□ -0.17
CCDC40-214ENST00000575431 IQGAP1P46940 1657 aa14□□□□□ -0.17
CCDC40-214ENST00000575431 PPP1R15AO75807 674 aaPredicted RBP13.99□□□□□ -0.17
CCDC40-214ENST00000575431 PCGF6Q9BYE7 350 aa13.98□□□□□ -0.17
CCDC40-214ENST00000575431 PLEKHG1Q9ULL1 1385 aa13.96□□□□□ -0.17
CCDC40-214ENST00000575431 VGFO15240 615 aaPredicted RBP13.96□□□□□ -0.17
CCDC40-214ENST00000575431 SPATA31E1Q6ZUB1 1445 aa13.96□□□□□ -0.18
CCDC40-214ENST00000575431 BCANQ96GW7 911 aa13.95□□□□□ -0.18
CCDC40-214ENST00000575431 NEXMIFQ5QGS0 1516 aa13.95□□□□□ -0.18
CCDC40-214ENST00000575431 STAC3Q96MF2 364 aa13.94□□□□□ -0.18
CCDC40-214ENST00000575431 DHX57Q6P158 1386 aaKnown RBP13.94□□□□□ -0.18
CCDC40-214ENST00000575431 TBX22Q9Y458 520 aa13.93□□□□□ -0.18
CCDC40-214ENST00000575431 PPLO60437 1756 aa13.92□□□□□ -0.18
CCDC40-214ENST00000575431 RGL3Q3MIN7 710 aa13.92□□□□□ -0.18
CCDC40-214ENST00000575431 DIP2AQ14689 1571 aa13.92□□□□□ -0.18
CCDC40-214ENST00000575431 NUTM2DQ5VT03 806 aaPredicted RBP13.9□□□□□ -0.18
CCDC40-214ENST00000575431 PIK3R4Q99570 1358 aa13.9□□□□□ -0.18
CCDC40-214ENST00000575431 SETBP1Q9Y6X0 1596 aa13.9□□□□□ -0.18
CCDC40-214ENST00000575431 IFT172Q9UG01 1749 aa13.9□□□□□ -0.18
CCDC40-214ENST00000575431 SLC26A8Q96RN1 970 aa13.89□□□□□ -0.19
CCDC40-214ENST00000575431 CPS1P31327 1500 aa13.89□□□□□ -0.19
CCDC40-214ENST00000575431 ZNF335Q9H4Z2 1342 aaPredicted RBP13.89□□□□□ -0.19
CCDC40-214ENST00000575431 LTBP4Q8N2S1 1624 aa13.88□□□□□ -0.19
CCDC40-214ENST00000575431 ADAMTS13Q76LX8 1427 aa13.88□□□□□ -0.19
CCDC40-214ENST00000575431 KCNA6P17658 529 aa13.87□□□□□ -0.19
CCDC40-214ENST00000575431 MYOM2P54296 1465 aa13.87□□□□□ -0.19
CCDC40-214ENST00000575431 CERKQ8TCT0 537 aa13.86□□□□□ -0.19
CCDC40-214ENST00000575431 IQSEC2Q5JU85 1478 aa13.86□□□□□ -0.19
CCDC40-214ENST00000575431 NRXN3Q9Y4C0 1643 aa13.85□□□□□ -0.19
CCDC40-214ENST00000575431 CLSPNQ9HAW4 1339 aa13.85□□□□□ -0.19
CCDC40-214ENST00000575431 DCAF11Q8TEB1 546 aa13.84□□□□□ -0.19
CCDC40-214ENST00000575431 CHD2O14647 1828 aaKnown RBP13.84□□□□□ -0.19
CCDC40-214ENST00000575431 ADGRF5Q8IZF2 1346 aa13.84□□□□□ -0.19
CCDC40-214ENST00000575431 NRXN1Q9ULB1 1477 aa13.83□□□□□ -0.2
CCDC40-214ENST00000575431 NWD1Q149M9 1564 aa13.83□□□□□ -0.2
CCDC40-214ENST00000575431 ALKQ9UM73 1620 aa13.82□□□□□ -0.2
CCDC40-214ENST00000575431 PIK3C2GO75747 1445 aa13.82□□□□□ -0.2
CCDC40-214ENST00000575431 NKTRP30414 1462 aaKnown RBP13.82□□□□□ -0.2
CCDC40-214ENST00000575431 SIN3AQ96ST3 1273 aa13.82□□□□□ -0.2
CCDC40-214ENST00000575431 LAMC1P11047 1609 aa13.82□□□□□ -0.2
CCDC40-214ENST00000575431 SENP3Q9H4L4 574 aaPredicted RBP13.81□□□□□ -0.2
CCDC40-214ENST00000575431 STRCP1A6NGW2 1772 aa13.81□□□□□ -0.2
CCDC40-214ENST00000575431 NEUROD1Q13562 356 aa13.8□□□□□ -0.2
CCDC40-214ENST00000575431 C14orf93Q9H972 538 aaKnown RBP13.8□□□□□ -0.2
CCDC40-214ENST00000575431 KDM2AQ9Y2K7 1162 aa13.8□□□□□ -0.2
CCDC40-214ENST00000575431 PROSER2Q86WR7 435 aaPredicted RBP13.79□□□□□ -0.2
CCDC40-214ENST00000575431 AMOTL2Q9Y2J4 779 aa13.79□□□□□ -0.2
CCDC40-214ENST00000575431 METP08581 1390 aa13.79□□□□□ -0.2
CCDC40-214ENST00000575431 NCOA3Q9Y6Q9 1424 aa13.79□□□□□ -0.2
CCDC40-214ENST00000575431 LRRC7Q96NW7 1537 aa13.79□□□□□ -0.2
CCDC40-214ENST00000575431 SETD1AO15047 1707 aaKnown RBP13.78□□□□□ -0.2
CCDC40-214ENST00000575431 PRAG1Q86YV5 1406 aa13.77□□□□□ -0.21
CCDC40-214ENST00000575431 L3MBTL2Q969R5 705 aa13.77□□□□□ -0.21
CCDC40-214ENST00000575431 XRN1Q8IZH2 1706 aaKnown RBP13.76□□□□□ -0.21
CCDC40-214ENST00000575431 TONSLQ96HA7 1378 aa13.76□□□□□ -0.21
CCDC40-214ENST00000575431 TIMELESSQ9UNS1 1208 aa13.76□□□□□ -0.21
CCDC40-214ENST00000575431 PTPRUQ92729 1446 aa13.75□□□□□ -0.21
CCDC40-214ENST00000575431 CFAP70Q5T0N1 1121 aa13.75□□□□□ -0.21
CCDC40-214ENST00000575431 CCER1Q8TC90 406 aaPredicted RBP13.75□□□□□ -0.21
CCDC40-214ENST00000575431 LRPPRCP42704 1394 aaKnown RBP13.74□□□□□ -0.21
CCDC40-214ENST00000575431 TMEM94Q12767 1356 aa13.74□□□□□ -0.21
CCDC40-214ENST00000575431 KIAA1210Q9ULL0 1709 aa13.74□□□□□ -0.21
CCDC40-214ENST00000575431 PTCH1Q13635 1447 aa13.73□□□□□ -0.21
CCDC40-214ENST00000575431 ABCC11Q96J66 1382 aa13.73□□□□□ -0.21
CCDC40-214ENST00000575431 TOM1O60784 492 aa13.73□□□□□ -0.21
CCDC40-214ENST00000575431 FBXO41Q8TF61 875 aa13.73□□□□□ -0.21
CCDC40-214ENST00000575431 SIRT1Q96EB6 747 aa13.73□□□□□ -0.21
CCDC40-214ENST00000575431 TECPR2O15040 1411 aa13.73□□□□□ -0.21
CCDC40-214ENST00000575431 YTHDC2Q9H6S0 1430 aaKnown RBP13.72□□□□□ -0.21
CCDC40-214ENST00000575431 MSH6P52701 1360 aa13.71□□□□□ -0.21
CCDC40-214ENST00000575431 XIRP1Q702N8 1843 aaKnown RBP13.71□□□□□ -0.21
CCDC40-214ENST00000575431 KNDC1Q76NI1 1749 aa13.71□□□□□ -0.21
CCDC40-214ENST00000575431 TMEM132EQ6IEE7 984 aa13.71□□□□□ -0.21
CCDC40-214ENST00000575431 C14orf37Q86TY3 774 aa13.71□□□□□ -0.21
CCDC40-214ENST00000575431 C19orf44Q9H6X5 657 aa13.71□□□□□ -0.21
CCDC40-214ENST00000575431 ASXL1Q8IXJ9 1541 aa13.7□□□□□ -0.22
CCDC40-214ENST00000575431 UBAP1LF5GYI3 381 aa13.7□□□□□ -0.22
CCDC40-214ENST00000575431 ADGRB1O14514 1584 aa13.7□□□□□ -0.22
CCDC40-214ENST00000575431 STK26Q9P289 416 aa13.69□□□□□ -0.22
CCDC40-214ENST00000575431 FAM135BQ49AJ0 1406 aa13.69□□□□□ -0.22
CCDC40-214ENST00000575431 CADPS2Q86UW7 1296 aa13.68□□□□□ -0.22
CCDC40-214ENST00000575431 DLC1Q96QB1 1528 aa13.68□□□□□ -0.22
CCDC40-214ENST00000575431 ROBO2Q9HCK4 1378 aa13.68□□□□□ -0.22
CCDC40-214ENST00000575431 DCCP43146 1447 aa13.67□□□□□ -0.22
CCDC40-214ENST00000575431 ADGRL3Q9HAR2 1447 aa13.66□□□□□ -0.22
CCDC40-214ENST00000575431 ATF3P18847 181 aa13.66□□□□□ -0.22
CCDC40-214ENST00000575431 RBM33Q96EV2 1170 aaKnown RBP13.66□□□□□ -0.22
CCDC40-214ENST00000575431 TRPM1Q7Z4N2 1603 aa13.65□□□□□ -0.22
CCDC40-214ENST00000575431 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.64□□□□□ -0.23
CCDC40-214ENST00000575431 POGKQ9P215 609 aa13.64□□□□□ -0.23
CCDC40-214ENST00000575431 NBPF1Q3BBV0 1214 aa13.63□□□□□ -0.23
CCDC40-214ENST00000575431 TRAK1Q9UPV9 953 aa13.63□□□□□ -0.23
CCDC40-214ENST00000575431 NALCNQ8IZF0 1738 aa13.62□□□□□ -0.23
CCDC40-214ENST00000575431 ROCK2O75116 1388 aaKnown RBP13.62□□□□□ -0.23
CCDC40-214ENST00000575431 NBPF8Q3BBV2 869 aa13.62□□□□□ -0.23
CCDC40-214ENST00000575431 WAPLQ7Z5K2 1190 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms