RNA–Protein interactions for RNA: ENST00000574003.1

RPAIN-214, Transcript of RPA interacting protein, humanhuman

TSL 4 BASIC

Gene RPAIN, Length 561 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-214ENST00000574003 RBM33Q96EV2 1170 aaKnown RBP17.18■□□□□ 0.34
RPAIN-214ENST00000574003 BCANQ96GW7 911 aa17.18■□□□□ 0.34
RPAIN-214ENST00000574003 RIMS2Q9UQ26 1411 aa17.18■□□□□ 0.34
RPAIN-214ENST00000574003 TOM1O60784 492 aa17.17■□□□□ 0.34
RPAIN-214ENST00000574003 ZFYVE9O95405 1425 aa17.17■□□□□ 0.34
RPAIN-214ENST00000574003 HSPA1LP34931 641 aa17.16■□□□□ 0.34
RPAIN-214ENST00000574003 XIRP1Q702N8 1843 aaKnown RBP17.14■□□□□ 0.34
RPAIN-214ENST00000574003 PPP1R15AO75807 674 aaPredicted RBP17.14■□□□□ 0.33
RPAIN-214ENST00000574003 DISP3Q9P2K9 1392 aa17.14■□□□□ 0.33
RPAIN-214ENST00000574003 KCNA6P17658 529 aa17.12■□□□□ 0.33
RPAIN-214ENST00000574003 TRIM52Q96A61 297 aa17.12■□□□□ 0.33
RPAIN-214ENST00000574003 PLEKHG1Q9ULL1 1385 aa17.11■□□□□ 0.33
RPAIN-214ENST00000574003 SPHKAPQ2M3C7 1700 aa17.1■□□□□ 0.33
RPAIN-214ENST00000574003 TMEM94Q12767 1356 aa17.1■□□□□ 0.33
RPAIN-214ENST00000574003 HFM1A2PYH4 1435 aa17.1■□□□□ 0.33
RPAIN-214ENST00000574003 PROSER2Q86WR7 435 aaPredicted RBP17.09■□□□□ 0.33
RPAIN-214ENST00000574003 ILDR2Q71H61 639 aa17.08■□□□□ 0.32
RPAIN-214ENST00000574003 ADAMTS13Q76LX8 1427 aa17.07■□□□□ 0.32
RPAIN-214ENST00000574003 CLTCL1P53675 1640 aa17.07■□□□□ 0.32
RPAIN-214ENST00000574003 HDGFP51858 240 aaKnown RBP17.06■□□□□ 0.32
RPAIN-214ENST00000574003 FOXD1Q16676 465 aa17.06■□□□□ 0.32
RPAIN-214ENST00000574003 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.06■□□□□ 0.32
RPAIN-214ENST00000574003 NWD1Q149M9 1564 aa17.06■□□□□ 0.32
RPAIN-214ENST00000574003 ZNF326Q5BKZ1 582 aaKnown RBP17.05■□□□□ 0.32
RPAIN-214ENST00000574003 SLC4A1APQ9BWU0 796 aaKnown RBP17.04■□□□□ 0.32
RPAIN-214ENST00000574003 CHD2O14647 1828 aaKnown RBP17.04■□□□□ 0.32
RPAIN-214ENST00000574003 TBX22Q9Y458 520 aa17.03■□□□□ 0.32
RPAIN-214ENST00000574003 TRPM2O94759 1503 aa17.02■□□□□ 0.32
RPAIN-214ENST00000574003 NKTRP30414 1462 aaKnown RBP17.01■□□□□ 0.31
RPAIN-214ENST00000574003 PTPRUQ92729 1446 aa17■□□□□ 0.31
RPAIN-214ENST00000574003 NRXN3Q9Y4C0 1643 aa16.99■□□□□ 0.31
RPAIN-214ENST00000574003 NEXMIFQ5QGS0 1516 aa16.97■□□□□ 0.31
RPAIN-214ENST00000574003 AMOTL2Q9Y2J4 779 aa16.97■□□□□ 0.31
RPAIN-214ENST00000574003 KIF1BO60333 1816 aa16.97■□□□□ 0.31
RPAIN-214ENST00000574003 MSH6P52701 1360 aa16.96■□□□□ 0.31
RPAIN-214ENST00000574003 DIP2AQ14689 1571 aa16.96■□□□□ 0.31
RPAIN-214ENST00000574003 MED1Q15648 1581 aaPredicted RBP16.96■□□□□ 0.31
RPAIN-214ENST00000574003 METP08581 1390 aa16.95■□□□□ 0.3
RPAIN-214ENST00000574003 C14orf37Q86TY3 774 aa16.95■□□□□ 0.3
RPAIN-214ENST00000574003 MPHOSPH9Q99550 1183 aa16.94■□□□□ 0.3
RPAIN-214ENST00000574003 FAM135BQ49AJ0 1406 aa16.94■□□□□ 0.3
RPAIN-214ENST00000574003 ROBO1Q9Y6N7 1651 aa16.94■□□□□ 0.3
RPAIN-214ENST00000574003 SETBP1Q9Y6X0 1596 aa16.94■□□□□ 0.3
RPAIN-214ENST00000574003 PIK3R4Q99570 1358 aa16.92■□□□□ 0.3
RPAIN-214ENST00000574003 SLAIN2Q9P270 581 aa16.92■□□□□ 0.3
RPAIN-214ENST00000574003 SETD5Q9C0A6 1442 aa16.9■□□□□ 0.3
RPAIN-214ENST00000574003 XRN1Q8IZH2 1706 aaKnown RBP16.9■□□□□ 0.3
RPAIN-214ENST00000574003 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.9■□□□□ 0.3
RPAIN-214ENST00000574003 RGL3Q3MIN7 710 aa16.89■□□□□ 0.29
RPAIN-214ENST00000574003 C19orf44Q9H6X5 657 aa16.87■□□□□ 0.29
RPAIN-214ENST00000574003 RAB3GAP2Q9H2M9 1393 aa16.87■□□□□ 0.29
RPAIN-214ENST00000574003 PPLO60437 1756 aa16.87■□□□□ 0.29
RPAIN-214ENST00000574003 VGFO15240 615 aaPredicted RBP16.86■□□□□ 0.29
RPAIN-214ENST00000574003 CCDC144AA2RUR9 1427 aa16.86■□□□□ 0.29
RPAIN-214ENST00000574003 NCOA3Q9Y6Q9 1424 aa16.86■□□□□ 0.29
RPAIN-214ENST00000574003 ATF3P18847 181 aa16.85■□□□□ 0.29
RPAIN-214ENST00000574003 PHF23Q9BUL5 403 aaPredicted RBP16.85■□□□□ 0.29
RPAIN-214ENST00000574003 ADGRF5Q8IZF2 1346 aa16.85■□□□□ 0.29
RPAIN-214ENST00000574003 SETD1AO15047 1707 aaKnown RBP16.84■□□□□ 0.29
RPAIN-214ENST00000574003 PHLPP1O60346 1717 aa16.83■□□□□ 0.28
RPAIN-214ENST00000574003 RPGRIP1LQ68CZ1 1315 aa16.83■□□□□ 0.28
RPAIN-214ENST00000574003 SPATA31E1Q6ZUB1 1445 aa16.83■□□□□ 0.28
RPAIN-214ENST00000574003 CADPS2Q86UW7 1296 aa16.83■□□□□ 0.28
RPAIN-214ENST00000574003 SOCS7O14512 581 aa16.82■□□□□ 0.28
RPAIN-214ENST00000574003 ROBO2Q9HCK4 1378 aa16.81■□□□□ 0.28
RPAIN-214ENST00000574003 RGS17Q9UGC6 210 aaPredicted RBP16.8■□□□□ 0.28
RPAIN-214ENST00000574003 NALCNQ8IZF0 1738 aa16.79■□□□□ 0.28
RPAIN-214ENST00000574003 BRINP3Q76B58 766 aa16.79■□□□□ 0.28
RPAIN-214ENST00000574003 COL16A1Q07092 1604 aaPredicted RBP16.78■□□□□ 0.28
RPAIN-214ENST00000574003 DDX17Q92841 729 aaKnown RBP16.78■□□□□ 0.28
RPAIN-214ENST00000574003 MST1RQ04912 1400 aa16.78■□□□□ 0.28
RPAIN-214ENST00000574003 ADGRL3Q9HAR2 1447 aa16.78■□□□□ 0.28
RPAIN-214ENST00000574003 IFT172Q9UG01 1749 aa16.77■□□□□ 0.28
RPAIN-214ENST00000574003 STK26Q9P289 416 aa16.77■□□□□ 0.28
RPAIN-214ENST00000574003 TMEM132EQ6IEE7 984 aa16.76■□□□□ 0.27
RPAIN-214ENST00000574003 DCCP43146 1447 aa16.75■□□□□ 0.27
RPAIN-214ENST00000574003 PTCH1Q13635 1447 aa16.74■□□□□ 0.27
RPAIN-214ENST00000574003 ASXL1Q8IXJ9 1541 aa16.74■□□□□ 0.27
RPAIN-214ENST00000574003 ANKRD30BQ9BXX2 1392 aa16.74■□□□□ 0.27
RPAIN-214ENST00000574003 JCADQ9P266 1359 aa16.74■□□□□ 0.27
RPAIN-214ENST00000574003 AHDC1Q5TGY3 1603 aaPredicted RBP16.74■□□□□ 0.27
RPAIN-214ENST00000574003 WAPLQ7Z5K2 1190 aa16.73■□□□□ 0.27
RPAIN-214ENST00000574003 PIK3C2GO75747 1445 aa16.71■□□□□ 0.27
RPAIN-214ENST00000574003 POTEAQ6S8J7 498 aa16.71■□□□□ 0.27
RPAIN-214ENST00000574003 ORAI2Q96SN7 254 aa16.71■□□□□ 0.27
RPAIN-214ENST00000574003 PLEKHH1Q9ULM0 1364 aa16.71■□□□□ 0.27
RPAIN-214ENST00000574003 LRP6O75581 1613 aa16.7■□□□□ 0.26
RPAIN-214ENST00000574003 C1orf167Q5SNV9 1468 aa16.7■□□□□ 0.26
RPAIN-214ENST00000574003 CFAP70Q5T0N1 1121 aa16.7■□□□□ 0.26
RPAIN-214ENST00000574003 LRPPRCP42704 1394 aaKnown RBP16.69■□□□□ 0.26
RPAIN-214ENST00000574003 PRAG1Q86YV5 1406 aa16.69■□□□□ 0.26
RPAIN-214ENST00000574003 ACIN1Q9UKV3 1341 aaKnown RBP16.69■□□□□ 0.26
RPAIN-214ENST00000574003 NUTM2FA1L443 756 aa16.68■□□□□ 0.26
RPAIN-214ENST00000574003 NUTM2BA6NNL0 878 aaPredicted RBP16.68■□□□□ 0.26
RPAIN-214ENST00000574003 NUTM2EB1AL46 878 aaPredicted RBP16.68■□□□□ 0.26
RPAIN-214ENST00000574003 NUTM2AQ8IVF1 878 aaPredicted RBP16.68■□□□□ 0.26
RPAIN-214ENST00000574003 NHSL1Q5SYE7 1610 aa16.67■□□□□ 0.26
RPAIN-214ENST00000574003 C14orf93Q9H972 538 aaKnown RBP16.67■□□□□ 0.26
RPAIN-214ENST00000574003 KDM2AQ9Y2K7 1162 aa16.67■□□□□ 0.26
RPAIN-214ENST00000574003 YTHDC2Q9H6S0 1430 aaKnown RBP16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms