RNA–Protein interactions for RNA: ENST00000573903.1

CCDC40-210, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 561 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-210ENST00000573903 NKTRP30414 1462 aaKnown RBP18.72■□□□□ 0.59
CCDC40-210ENST00000573903 PPP1R15AO75807 674 aaPredicted RBP18.72■□□□□ 0.59
CCDC40-210ENST00000573903 HDGFP51858 240 aaKnown RBP18.72■□□□□ 0.59
CCDC40-210ENST00000573903 NWD1Q149M9 1564 aa18.72■□□□□ 0.59
CCDC40-210ENST00000573903 ROCK1Q13464 1354 aa18.7■□□□□ 0.58
CCDC40-210ENST00000573903 PROSER2Q86WR7 435 aaPredicted RBP18.7■□□□□ 0.58
CCDC40-210ENST00000573903 TMEM131LA2VDJ0 1609 aa18.69■□□□□ 0.58
CCDC40-210ENST00000573903 IQGAP3Q86VI3 1631 aa18.69■□□□□ 0.58
CCDC40-210ENST00000573903 E9PCH4 1651 aa18.69■□□□□ 0.58
CCDC40-210ENST00000573903 PLEKHG1Q9ULL1 1385 aa18.68■□□□□ 0.58
CCDC40-210ENST00000573903 RIMS2Q9UQ26 1411 aa18.68■□□□□ 0.58
CCDC40-210ENST00000573903 ZFYVE9O95405 1425 aa18.67■□□□□ 0.58
CCDC40-210ENST00000573903 FAM135BQ49AJ0 1406 aa18.67■□□□□ 0.58
CCDC40-210ENST00000573903 CHGAP10645 457 aaKnown RBP18.67■□□□□ 0.58
CCDC40-210ENST00000573903 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.66■□□□□ 0.58
CCDC40-210ENST00000573903 ROBO1Q9Y6N7 1651 aa18.66■□□□□ 0.58
CCDC40-210ENST00000573903 MSH6P52701 1360 aa18.66■□□□□ 0.58
CCDC40-210ENST00000573903 CHD2O14647 1828 aaKnown RBP18.65■□□□□ 0.58
CCDC40-210ENST00000573903 ITGAEP38570 1179 aa18.64■□□□□ 0.57
CCDC40-210ENST00000573903 RBM33Q96EV2 1170 aaKnown RBP18.63■□□□□ 0.57
CCDC40-210ENST00000573903 NUP155O75694 1391 aa18.62■□□□□ 0.57
CCDC40-210ENST00000573903 DIP2AQ14689 1571 aa18.62■□□□□ 0.57
CCDC40-210ENST00000573903 TBX22Q9Y458 520 aa18.59■□□□□ 0.57
CCDC40-210ENST00000573903 C14orf37Q86TY3 774 aa18.58■□□□□ 0.56
CCDC40-210ENST00000573903 PHLPP1O60346 1717 aa18.57■□□□□ 0.56
CCDC40-210ENST00000573903 SPHKAPQ2M3C7 1700 aa18.57■□□□□ 0.56
CCDC40-210ENST00000573903 TRPM2O94759 1503 aa18.56■□□□□ 0.56
CCDC40-210ENST00000573903 NUTM2DQ5VT03 806 aaPredicted RBP18.56■□□□□ 0.56
CCDC40-210ENST00000573903 PPARGC1BQ86YN6 1023 aaKnown RBP18.56■□□□□ 0.56
CCDC40-210ENST00000573903 NCOA3Q9Y6Q9 1424 aa18.56■□□□□ 0.56
CCDC40-210ENST00000573903 PIK3R4Q99570 1358 aa18.55■□□□□ 0.56
CCDC40-210ENST00000573903 SLAIN2Q9P270 581 aa18.55■□□□□ 0.56
CCDC40-210ENST00000573903 ADAMTS13Q76LX8 1427 aa18.54■□□□□ 0.56
CCDC40-210ENST00000573903 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.5■□□□□ 0.55
CCDC40-210ENST00000573903 JCADQ9P266 1359 aa18.5■□□□□ 0.55
CCDC40-210ENST00000573903 ATF3P18847 181 aa18.49■□□□□ 0.55
CCDC40-210ENST00000573903 ZNF326Q5BKZ1 582 aaKnown RBP18.49■□□□□ 0.55
CCDC40-210ENST00000573903 CADPS2Q86UW7 1296 aa18.49■□□□□ 0.55
CCDC40-210ENST00000573903 RGS17Q9UGC6 210 aaPredicted RBP18.48■□□□□ 0.55
CCDC40-210ENST00000573903 C19orf44Q9H6X5 657 aa18.47■□□□□ 0.55
CCDC40-210ENST00000573903 AMOTL2Q9Y2J4 779 aa18.47■□□□□ 0.55
CCDC40-210ENST00000573903 COL16A1Q07092 1604 aaPredicted RBP18.47■□□□□ 0.55
CCDC40-210ENST00000573903 RRBP1Q9P2E9 1410 aaKnown RBP18.47■□□□□ 0.55
CCDC40-210ENST00000573903 SETBP1Q9Y6X0 1596 aa18.47■□□□□ 0.55
CCDC40-210ENST00000573903 NRXN3Q9Y4C0 1643 aa18.45■□□□□ 0.54
CCDC40-210ENST00000573903 KIF1BO60333 1816 aa18.45■□□□□ 0.54
CCDC40-210ENST00000573903 XRN1Q8IZH2 1706 aaKnown RBP18.44■□□□□ 0.54
CCDC40-210ENST00000573903 CLTCL1P53675 1640 aa18.44■□□□□ 0.54
CCDC40-210ENST00000573903 DCCP43146 1447 aa18.43■□□□□ 0.54
CCDC40-210ENST00000573903 PTPRUQ92729 1446 aa18.43■□□□□ 0.54
CCDC40-210ENST00000573903 AHDC1Q5TGY3 1603 aaPredicted RBP18.43■□□□□ 0.54
CCDC40-210ENST00000573903 NAIPQ13075 1403 aa18.41■□□□□ 0.54
CCDC40-210ENST00000573903 POTEAQ6S8J7 498 aa18.41■□□□□ 0.54
CCDC40-210ENST00000573903 SPATA31A6Q5VVP1 1343 aa18.41■□□□□ 0.54
CCDC40-210ENST00000573903 NEXMIFQ5QGS0 1516 aa18.4■□□□□ 0.54
CCDC40-210ENST00000573903 MEX3CQ5U5Q3 659 aaKnown RBP18.4■□□□□ 0.54
CCDC40-210ENST00000573903 SHPRHQ149N8 1683 aa18.4■□□□□ 0.54
CCDC40-210ENST00000573903 TRIM52Q96A61 297 aa18.38■□□□□ 0.53
CCDC40-210ENST00000573903 HFM1A2PYH4 1435 aa18.36■□□□□ 0.53
CCDC40-210ENST00000573903 METP08581 1390 aa18.36■□□□□ 0.53
CCDC40-210ENST00000573903 BRINP3Q76B58 766 aa18.36■□□□□ 0.53
CCDC40-210ENST00000573903 ASXL1Q8IXJ9 1541 aa18.35■□□□□ 0.53
CCDC40-210ENST00000573903 LRP6O75581 1613 aa18.34■□□□□ 0.53
CCDC40-210ENST00000573903 ADGRL3Q9HAR2 1447 aa18.34■□□□□ 0.53
CCDC40-210ENST00000573903 NALCNQ8IZF0 1738 aa18.34■□□□□ 0.53
CCDC40-210ENST00000573903 MST1RQ04912 1400 aa18.33■□□□□ 0.53
CCDC40-210ENST00000573903 NHSL1Q5SYE7 1610 aa18.33■□□□□ 0.52
CCDC40-210ENST00000573903 VGFO15240 615 aaPredicted RBP18.32■□□□□ 0.52
CCDC40-210ENST00000573903 ZNF772Q68DY9 489 aaPredicted RBP18.32■□□□□ 0.52
CCDC40-210ENST00000573903 SLC4A1APQ9BWU0 796 aaKnown RBP18.32■□□□□ 0.52
CCDC40-210ENST00000573903 SETD1AO15047 1707 aaKnown RBP18.32■□□□□ 0.52
CCDC40-210ENST00000573903 RPGRIP1LQ68CZ1 1315 aa18.29■□□□□ 0.52
CCDC40-210ENST00000573903 PTCH1Q13635 1447 aa18.29■□□□□ 0.52
CCDC40-210ENST00000573903 SETD5Q9C0A6 1442 aa18.29■□□□□ 0.52
CCDC40-210ENST00000573903 PPLO60437 1756 aa18.28■□□□□ 0.52
CCDC40-210ENST00000573903 NUTM2BA6NNL0 878 aaPredicted RBP18.28■□□□□ 0.52
CCDC40-210ENST00000573903 NUTM2EB1AL46 878 aaPredicted RBP18.28■□□□□ 0.52
CCDC40-210ENST00000573903 NUTM2AQ8IVF1 878 aaPredicted RBP18.28■□□□□ 0.52
CCDC40-210ENST00000573903 LRRC59Q96AG4 307 aaKnown RBP18.27■□□□□ 0.52
CCDC40-210ENST00000573903 C1orf167Q5SNV9 1468 aa18.23■□□□□ 0.51
CCDC40-210ENST00000573903 CCDC144AA2RUR9 1427 aa18.23■□□□□ 0.51
CCDC40-210ENST00000573903 PRAG1Q86YV5 1406 aa18.23■□□□□ 0.51
CCDC40-210ENST00000573903 ROBO2Q9HCK4 1378 aa18.22■□□□□ 0.51
CCDC40-210ENST00000573903 RXRBP28702 533 aa18.21■□□□□ 0.51
CCDC40-210ENST00000573903 PNPLA6Q8IY17 1366 aa18.2■□□□□ 0.5
CCDC40-210ENST00000573903 DDX17Q92841 729 aaKnown RBP18.2■□□□□ 0.5
CCDC40-210ENST00000573903 AFF2P51816 1311 aa18.2■□□□□ 0.5
CCDC40-210ENST00000573903 LAMC1P11047 1609 aa18.2■□□□□ 0.5
CCDC40-210ENST00000573903 FOXD1Q16676 465 aa18.18■□□□□ 0.5
CCDC40-210ENST00000573903 C8orf37Q96NL8 207 aa18.17■□□□□ 0.5
CCDC40-210ENST00000573903 CDK12Q9NYV4 1490 aaPredicted RBP18.17■□□□□ 0.5
CCDC40-210ENST00000573903 CDC42BPGQ6DT37 1551 aa18.17■□□□□ 0.5
CCDC40-210ENST00000573903 IFT172Q9UG01 1749 aa18.16■□□□□ 0.5
CCDC40-210ENST00000573903 ANKRD30BQ9BXX2 1392 aa18.16■□□□□ 0.5
CCDC40-210ENST00000573903 RGL3Q3MIN7 710 aa18.15■□□□□ 0.5
CCDC40-210ENST00000573903 ORAI2Q96SN7 254 aa18.15■□□□□ 0.5
CCDC40-210ENST00000573903 MPHOSPH9Q99550 1183 aa18.14■□□□□ 0.49
CCDC40-210ENST00000573903 ACIN1Q9UKV3 1341 aaKnown RBP18.14■□□□□ 0.49
CCDC40-210ENST00000573903 SOS2Q07890 1332 aaPredicted RBP18.13■□□□□ 0.49
CCDC40-210ENST00000573903 ADGRF5Q8IZF2 1346 aa18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms