RNA–Protein interactions for RNA: ENST00000572083.5

CCDC40-206, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 816 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-206ENST00000572083 MSH6P52701 1360 aa31.06■■■□□ 2.56
CCDC40-206ENST00000572083 SLC52A1Q9NWF4 448 aa31.05■■■□□ 2.56
CCDC40-206ENST00000572083 PHLPP1O60346 1717 aa31.04■■■□□ 2.56
CCDC40-206ENST00000572083 ADGRL2O95490 1459 aa31.04■■■□□ 2.56
CCDC40-206ENST00000572083 MYO5BQ9ULV0 1848 aa31.04■■■□□ 2.56
CCDC40-206ENST00000572083 GCC2Q8IWJ2 1684 aa31.03■■■□□ 2.56
CCDC40-206ENST00000572083 ZFYVE9O95405 1425 aa31.02■■■□□ 2.56
CCDC40-206ENST00000572083 RPRD2Q5VT52 1461 aaKnown RBP31.01■■■□□ 2.55
CCDC40-206ENST00000572083 SETD1AO15047 1707 aaKnown RBP31■■■□□ 2.55
CCDC40-206ENST00000572083 CHD2O14647 1828 aaKnown RBP30.99■■■□□ 2.55
CCDC40-206ENST00000572083 SLAIN2Q9P270 581 aa30.99■■■□□ 2.55
CCDC40-206ENST00000572083 PLEKHG1Q9ULL1 1385 aa30.99■■■□□ 2.55
CCDC40-206ENST00000572083 RIMS2Q9UQ26 1411 aa30.98■■■□□ 2.55
CCDC40-206ENST00000572083 PPP1R15AO75807 674 aaPredicted RBP30.97■■■□□ 2.55
CCDC40-206ENST00000572083 ANKRD50Q9ULJ7 1429 aa30.96■■■□□ 2.55
CCDC40-206ENST00000572083 TMEM131LA2VDJ0 1609 aa30.95■■■□□ 2.55
CCDC40-206ENST00000572083 JCADQ9P266 1359 aa30.95■■■□□ 2.55
CCDC40-206ENST00000572083 FAM50AQ14320 339 aaKnown RBP30.94■■■□□ 2.54
CCDC40-206ENST00000572083 COL16A1Q07092 1604 aaPredicted RBP30.94■■■□□ 2.54
CCDC40-206ENST00000572083 CHGAP10645 457 aaKnown RBP30.86■■■□□ 2.53
CCDC40-206ENST00000572083 HDGFP51858 240 aaKnown RBP30.86■■■□□ 2.53
CCDC40-206ENST00000572083 UNC13BO14795 1591 aa30.86■■■□□ 2.53
CCDC40-206ENST00000572083 LRP6O75581 1613 aa30.86■■■□□ 2.53
CCDC40-206ENST00000572083 C14orf37Q86TY3 774 aa30.85■■■□□ 2.53
CCDC40-206ENST00000572083 NUTM2DQ5VT03 806 aaPredicted RBP30.84■■■□□ 2.53
CCDC40-206ENST00000572083 TBX22Q9Y458 520 aa30.84■■■□□ 2.53
CCDC40-206ENST00000572083 ADAMTS13Q76LX8 1427 aa30.83■■■□□ 2.53
CCDC40-206ENST00000572083 E9PCH4 1651 aa30.83■■■□□ 2.53
CCDC40-206ENST00000572083 NCOA3Q9Y6Q9 1424 aa30.82■■■□□ 2.52
CCDC40-206ENST00000572083 SIPA1L2Q9P2F8 1722 aaPredicted RBP30.82■■■□□ 2.52
CCDC40-206ENST00000572083 DIP2AQ14689 1571 aa30.82■■■□□ 2.52
CCDC40-206ENST00000572083 ABCF1Q8NE71 845 aaKnown RBP eCLIP30.81■■■□□ 2.52
CCDC40-206ENST00000572083 AHDC1Q5TGY3 1603 aaPredicted RBP30.79■■■□□ 2.52
CCDC40-206ENST00000572083 SPATA31A6Q5VVP1 1343 aa30.77■■■□□ 2.52
CCDC40-206ENST00000572083 MEX3CQ5U5Q3 659 aaKnown RBP30.77■■■□□ 2.52
CCDC40-206ENST00000572083 SHPRHQ149N8 1683 aa30.76■■■□□ 2.51
CCDC40-206ENST00000572083 CADPS2Q86UW7 1296 aa30.75■■■□□ 2.51
CCDC40-206ENST00000572083 IQGAP3Q86VI3 1631 aa30.74■■■□□ 2.51
CCDC40-206ENST00000572083 ATF3P18847 181 aa30.74■■■□□ 2.51
CCDC40-206ENST00000572083 TRPM2O94759 1503 aa30.73■■■□□ 2.51
CCDC40-206ENST00000572083 C19orf44Q9H6X5 657 aa30.73■■■□□ 2.51
CCDC40-206ENST00000572083 PIK3R4Q99570 1358 aa30.73■■■□□ 2.51
CCDC40-206ENST00000572083 PTPRUQ92729 1446 aa30.7■■■□□ 2.5
CCDC40-206ENST00000572083 ZNF772Q68DY9 489 aaPredicted RBP30.69■■■□□ 2.5
CCDC40-206ENST00000572083 TRIM52Q96A61 297 aa30.69■■■□□ 2.5
CCDC40-206ENST00000572083 AMOTL2Q9Y2J4 779 aa30.67■■■□□ 2.5
CCDC40-206ENST00000572083 BRINP3Q76B58 766 aa30.66■■■□□ 2.5
CCDC40-206ENST00000572083 ROCK1Q13464 1354 aa30.64■■■□□ 2.5
CCDC40-206ENST00000572083 NRXN3Q9Y4C0 1643 aa30.63■■■□□ 2.49
CCDC40-206ENST00000572083 UPF1Q92900 1129 aaKnown RBP eCLIP30.63■■■□□ 2.49
CCDC40-206ENST00000572083 XRN1Q8IZH2 1706 aaKnown RBP30.62■■■□□ 2.49
CCDC40-206ENST00000572083 NUP155O75694 1391 aa30.62■■■□□ 2.49
CCDC40-206ENST00000572083 ASXL1Q8IXJ9 1541 aa30.62■■■□□ 2.49
CCDC40-206ENST00000572083 NUTM2BA6NNL0 878 aaPredicted RBP30.61■■■□□ 2.49
CCDC40-206ENST00000572083 NUTM2EB1AL46 878 aaPredicted RBP30.61■■■□□ 2.49
CCDC40-206ENST00000572083 NUTM2AQ8IVF1 878 aaPredicted RBP30.61■■■□□ 2.49
CCDC40-206ENST00000572083 DCCP43146 1447 aa30.61■■■□□ 2.49
CCDC40-206ENST00000572083 SETBP1Q9Y6X0 1596 aa30.58■■■□□ 2.49
CCDC40-206ENST00000572083 NHSL1Q5SYE7 1610 aa30.56■■■□□ 2.48
CCDC40-206ENST00000572083 RXRBP28702 533 aa30.56■■■□□ 2.48
CCDC40-206ENST00000572083 MST1RQ04912 1400 aa30.56■■■□□ 2.48
CCDC40-206ENST00000572083 SPHKAPQ2M3C7 1700 aa30.55■■■□□ 2.48
CCDC40-206ENST00000572083 ITGAEP38570 1179 aa30.53■■■□□ 2.48
CCDC40-206ENST00000572083 SETD5Q9C0A6 1442 aa30.53■■■□□ 2.48
CCDC40-206ENST00000572083 AFF2P51816 1311 aa30.52■■■□□ 2.48
CCDC40-206ENST00000572083 CDK12Q9NYV4 1490 aaPredicted RBP30.5■■■□□ 2.47
CCDC40-206ENST00000572083 ZNF326Q5BKZ1 582 aaKnown RBP30.5■■■□□ 2.47
CCDC40-206ENST00000572083 METP08581 1390 aa30.5■■■□□ 2.47
CCDC40-206ENST00000572083 NALCNQ8IZF0 1738 aa30.47■■■□□ 2.47
CCDC40-206ENST00000572083 DDX17Q92841 729 aaKnown RBP30.47■■■□□ 2.47
CCDC40-206ENST00000572083 ADGRL3Q9HAR2 1447 aa30.47■■■□□ 2.47
CCDC40-206ENST00000572083 LRRC59Q96AG4 307 aaKnown RBP30.43■■■□□ 2.46
CCDC40-206ENST00000572083 C8orf37Q96NL8 207 aa30.43■■■□□ 2.46
CCDC40-206ENST00000572083 NEXMIFQ5QGS0 1516 aa30.42■■■□□ 2.46
CCDC40-206ENST00000572083 PNPLA6Q8IY17 1366 aa30.42■■■□□ 2.46
CCDC40-206ENST00000572083 CLTCL1P53675 1640 aa30.42■■■□□ 2.46
CCDC40-206ENST00000572083 RGS12O14924 1447 aa30.41■■■□□ 2.46
CCDC40-206ENST00000572083 QTRT2Q9H974 415 aaKnown RBP30.36■■■□□ 2.45
CCDC40-206ENST00000572083 C1orf167Q5SNV9 1468 aa30.33■■■□□ 2.45
CCDC40-206ENST00000572083 RBM6P78332 1123 aaKnown RBP30.32■■■□□ 2.44
CCDC40-206ENST00000572083 PPARGC1BQ86YN6 1023 aaKnown RBP30.32■■■□□ 2.44
CCDC40-206ENST00000572083 SRCAPQ6ZRS2 3230 aa30.32■■■□□ 2.44
CCDC40-206ENST00000572083 ADAMTS2O95450 1211 aa30.31■■■□□ 2.44
CCDC40-206ENST00000572083 KIF1BO60333 1816 aa30.31■■■□□ 2.44
CCDC40-206ENST00000572083 LAMC1P11047 1609 aa30.29■■■□□ 2.44
CCDC40-206ENST00000572083 PTCH1Q13635 1447 aa30.29■■■□□ 2.44
CCDC40-206ENST00000572083 NGLY1Q96IV0 654 aa30.27■■■□□ 2.44
CCDC40-206ENST00000572083 ROBO2Q9HCK4 1378 aa30.26■■■□□ 2.43
CCDC40-206ENST00000572083 ORAI2Q96SN7 254 aa30.24■■■□□ 2.43
CCDC40-206ENST00000572083 SOS2Q07890 1332 aaPredicted RBP30.22■■■□□ 2.43
CCDC40-206ENST00000572083 USP21Q9UK80 565 aa30.18■■■□□ 2.42
CCDC40-206ENST00000572083 ATAD2Q6PL18 1390 aa30.16■■■□□ 2.42
CCDC40-206ENST00000572083 NAIPQ13075 1403 aa30.16■■■□□ 2.42
CCDC40-206ENST00000572083 PRAG1Q86YV5 1406 aa30.16■■■□□ 2.42
CCDC40-206ENST00000572083 VGFO15240 615 aaPredicted RBP30.16■■■□□ 2.42
CCDC40-206ENST00000572083 EP400Q96L91 3159 aa30.15■■■□□ 2.42
CCDC40-206ENST00000572083 COL22A1Q8NFW1 1626 aaPredicted RBP30.15■■■□□ 2.42
CCDC40-206ENST00000572083 TRPC5Q9UL62 973 aaPredicted RBP30.13■■■□□ 2.41
CCDC40-206ENST00000572083 HFM1A2PYH4 1435 aa30.13■■■□□ 2.41
CCDC40-206ENST00000572083 PPLO60437 1756 aa30.11■■■□□ 2.41
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms