RNA–Protein interactions for RNA: ENST00000568755.1

VPS39-211, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 581 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-211ENST00000568755 TMEM131LA2VDJ0 1609 aa15.7■□□□□ 0.1
VPS39-211ENST00000568755 E9PCH4 1651 aa15.7■□□□□ 0.1
VPS39-211ENST00000568755 FAM50AQ14320 339 aaKnown RBP15.69■□□□□ 0.1
VPS39-211ENST00000568755 SLC52A1Q9NWF4 448 aa15.69■□□□□ 0.1
VPS39-211ENST00000568755 ZFYVE9O95405 1425 aa15.68■□□□□ 0.1
VPS39-211ENST00000568755 ROBO1Q9Y6N7 1651 aa15.68■□□□□ 0.1
VPS39-211ENST00000568755 NKTRP30414 1462 aaKnown RBP15.68■□□□□ 0.1
VPS39-211ENST00000568755 TMEM94Q12767 1356 aa15.68■□□□□ 0.1
VPS39-211ENST00000568755 KCNA6P17658 529 aa15.68■□□□□ 0.1
VPS39-211ENST00000568755 FAM135BQ49AJ0 1406 aa15.67■□□□□ 0.1
VPS39-211ENST00000568755 IQGAP3Q86VI3 1631 aa15.66■□□□□ 0.1
VPS39-211ENST00000568755 SLC26A8Q96RN1 970 aa15.66■□□□□ 0.1
VPS39-211ENST00000568755 ROCK1Q13464 1354 aa15.63■□□□□ 0.09
VPS39-211ENST00000568755 PLEKHG1Q9ULL1 1385 aa15.63■□□□□ 0.09
VPS39-211ENST00000568755 RIMS2Q9UQ26 1411 aa15.62■□□□□ 0.09
VPS39-211ENST00000568755 PROSER2Q86WR7 435 aaPredicted RBP15.61■□□□□ 0.09
VPS39-211ENST00000568755 RBM33Q96EV2 1170 aaKnown RBP15.6■□□□□ 0.09
VPS39-211ENST00000568755 PHLPP1O60346 1717 aa15.6■□□□□ 0.09
VPS39-211ENST00000568755 DIP2AQ14689 1571 aa15.59■□□□□ 0.09
VPS39-211ENST00000568755 RGS17Q9UGC6 210 aaPredicted RBP15.59■□□□□ 0.09
VPS39-211ENST00000568755 ADAMTS13Q76LX8 1427 aa15.58■□□□□ 0.08
VPS39-211ENST00000568755 SPHKAPQ2M3C7 1700 aa15.57■□□□□ 0.08
VPS39-211ENST00000568755 MSH6P52701 1360 aa15.57■□□□□ 0.08
VPS39-211ENST00000568755 BCANQ96GW7 911 aa15.56■□□□□ 0.08
VPS39-211ENST00000568755 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.56■□□□□ 0.08
VPS39-211ENST00000568755 PPP1R15AO75807 674 aaPredicted RBP15.55■□□□□ 0.08
VPS39-211ENST00000568755 HDGFP51858 240 aaKnown RBP15.55■□□□□ 0.08
VPS39-211ENST00000568755 TBX22Q9Y458 520 aa15.55■□□□□ 0.08
VPS39-211ENST00000568755 COL16A1Q07092 1604 aaPredicted RBP15.54■□□□□ 0.08
VPS39-211ENST00000568755 NCOA3Q9Y6Q9 1424 aa15.54■□□□□ 0.08
VPS39-211ENST00000568755 NRXN3Q9Y4C0 1643 aa15.54■□□□□ 0.08
VPS39-211ENST00000568755 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.53■□□□□ 0.08
VPS39-211ENST00000568755 NUP155O75694 1391 aa15.52■□□□□ 0.08
VPS39-211ENST00000568755 CHGAP10645 457 aaKnown RBP15.52■□□□□ 0.08
VPS39-211ENST00000568755 SLAIN2Q9P270 581 aa15.52■□□□□ 0.08
VPS39-211ENST00000568755 TRPM2O94759 1503 aa15.52■□□□□ 0.07
VPS39-211ENST00000568755 PIK3R4Q99570 1358 aa15.51■□□□□ 0.07
VPS39-211ENST00000568755 XRN1Q8IZH2 1706 aaKnown RBP15.51■□□□□ 0.07
VPS39-211ENST00000568755 NUTM2DQ5VT03 806 aaPredicted RBP15.5■□□□□ 0.07
VPS39-211ENST00000568755 SETBP1Q9Y6X0 1596 aa15.49■□□□□ 0.07
VPS39-211ENST00000568755 AHDC1Q5TGY3 1603 aaPredicted RBP15.49■□□□□ 0.07
VPS39-211ENST00000568755 PTPRUQ92729 1446 aa15.49■□□□□ 0.07
VPS39-211ENST00000568755 JCADQ9P266 1359 aa15.48■□□□□ 0.07
VPS39-211ENST00000568755 SHPRHQ149N8 1683 aa15.48■□□□□ 0.07
VPS39-211ENST00000568755 KIF1BO60333 1816 aa15.47■□□□□ 0.07
VPS39-211ENST00000568755 CLTCL1P53675 1640 aa15.47■□□□□ 0.07
VPS39-211ENST00000568755 ITGAEP38570 1179 aa15.47■□□□□ 0.07
VPS39-211ENST00000568755 POTEAQ6S8J7 498 aa15.47■□□□□ 0.07
VPS39-211ENST00000568755 SETD1AO15047 1707 aaKnown RBP15.46■□□□□ 0.06
VPS39-211ENST00000568755 PPARGC1BQ86YN6 1023 aaKnown RBP15.44■□□□□ 0.06
VPS39-211ENST00000568755 C19orf44Q9H6X5 657 aa15.44■□□□□ 0.06
VPS39-211ENST00000568755 DCCP43146 1447 aa15.43■□□□□ 0.06
VPS39-211ENST00000568755 RRBP1Q9P2E9 1410 aaKnown RBP15.43■□□□□ 0.06
VPS39-211ENST00000568755 NEXMIFQ5QGS0 1516 aa15.43■□□□□ 0.06
VPS39-211ENST00000568755 LRP6O75581 1613 aa15.43■□□□□ 0.06
VPS39-211ENST00000568755 CADPS2Q86UW7 1296 aa15.43■□□□□ 0.06
VPS39-211ENST00000568755 AMOTL2Q9Y2J4 779 aa15.43■□□□□ 0.06
VPS39-211ENST00000568755 C14orf37Q86TY3 774 aa15.42■□□□□ 0.06
VPS39-211ENST00000568755 NHSL1Q5SYE7 1610 aa15.42■□□□□ 0.06
VPS39-211ENST00000568755 NALCNQ8IZF0 1738 aa15.41■□□□□ 0.06
VPS39-211ENST00000568755 ATF3P18847 181 aa15.4■□□□□ 0.06
VPS39-211ENST00000568755 NAIPQ13075 1403 aa15.4■□□□□ 0.06
VPS39-211ENST00000568755 SPATA31A6Q5VVP1 1343 aa15.4■□□□□ 0.06
VPS39-211ENST00000568755 METP08581 1390 aa15.39■□□□□ 0.05
VPS39-211ENST00000568755 ASXL1Q8IXJ9 1541 aa15.39■□□□□ 0.05
VPS39-211ENST00000568755 MST1RQ04912 1400 aa15.38■□□□□ 0.05
VPS39-211ENST00000568755 BRINP3Q76B58 766 aa15.38■□□□□ 0.05
VPS39-211ENST00000568755 POTEDQ86YR6 584 aa15.38■□□□□ 0.05
VPS39-211ENST00000568755 ZNF326Q5BKZ1 582 aaKnown RBP15.37■□□□□ 0.05
VPS39-211ENST00000568755 PPLO60437 1756 aa15.36■□□□□ 0.05
VPS39-211ENST00000568755 ADGRL3Q9HAR2 1447 aa15.35■□□□□ 0.05
VPS39-211ENST00000568755 HFM1A2PYH4 1435 aa15.34■□□□□ 0.05
VPS39-211ENST00000568755 SETD5Q9C0A6 1442 aa15.34■□□□□ 0.05
VPS39-211ENST00000568755 LAMC1P11047 1609 aa15.33■□□□□ 0.04
VPS39-211ENST00000568755 PTCH1Q13635 1447 aa15.31■□□□□ 0.04
VPS39-211ENST00000568755 PRAG1Q86YV5 1406 aa15.31■□□□□ 0.04
VPS39-211ENST00000568755 MEX3CQ5U5Q3 659 aaKnown RBP15.3■□□□□ 0.04
VPS39-211ENST00000568755 ZNF772Q68DY9 489 aaPredicted RBP15.3■□□□□ 0.04
VPS39-211ENST00000568755 IFT172Q9UG01 1749 aa15.28■□□□□ 0.04
VPS39-211ENST00000568755 C1orf167Q5SNV9 1468 aa15.27■□□□□ 0.04
VPS39-211ENST00000568755 ROBO2Q9HCK4 1378 aa15.27■□□□□ 0.04
VPS39-211ENST00000568755 PNPLA6Q8IY17 1366 aa15.26■□□□□ 0.03
VPS39-211ENST00000568755 VGFO15240 615 aaPredicted RBP15.26■□□□□ 0.03
VPS39-211ENST00000568755 CDK12Q9NYV4 1490 aaPredicted RBP15.26■□□□□ 0.03
VPS39-211ENST00000568755 RPGRIP1LQ68CZ1 1315 aa15.25■□□□□ 0.03
VPS39-211ENST00000568755 NUTM2BA6NNL0 878 aaPredicted RBP15.25■□□□□ 0.03
VPS39-211ENST00000568755 NUTM2EB1AL46 878 aaPredicted RBP15.25■□□□□ 0.03
VPS39-211ENST00000568755 NUTM2AQ8IVF1 878 aaPredicted RBP15.25■□□□□ 0.03
VPS39-211ENST00000568755 DDX17Q92841 729 aaKnown RBP15.25■□□□□ 0.03
VPS39-211ENST00000568755 TRIM52Q96A61 297 aa15.25■□□□□ 0.03
VPS39-211ENST00000568755 LRRC59Q96AG4 307 aaKnown RBP15.25■□□□□ 0.03
VPS39-211ENST00000568755 AFF2P51816 1311 aa15.23■□□□□ 0.03
VPS39-211ENST00000568755 SLC4A1APQ9BWU0 796 aaKnown RBP15.23■□□□□ 0.03
VPS39-211ENST00000568755 COL22A1Q8NFW1 1626 aaPredicted RBP15.22■□□□□ 0.03
VPS39-211ENST00000568755 CDC42BPGQ6DT37 1551 aa15.22■□□□□ 0.03
VPS39-211ENST00000568755 KNDC1Q76NI1 1749 aa15.22■□□□□ 0.03
VPS39-211ENST00000568755 RXRBP28702 533 aa15.21■□□□□ 0.03
VPS39-211ENST00000568755 UPF1Q92900 1129 aaKnown RBP eCLIP15.21■□□□□ 0.03
VPS39-211ENST00000568755 SOS2Q07890 1332 aaPredicted RBP15.2■□□□□ 0.02
VPS39-211ENST00000568755 MARF1Q9Y4F3 1742 aaKnown RBP15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms