RNA–Protein interactions for RNA: ENST00000568472.6

CLN3-234, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 1,011 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-234ENST00000568472 ZFYVE9O95405 1425 aa32.17■■■□□ 2.74
CLN3-234ENST00000568472 RPGRIP1LQ68CZ1 1315 aa32.15■■■□□ 2.74
CLN3-234ENST00000568472 POLR1AO95602 1720 aaPredicted RBP32.14■■■□□ 2.74
CLN3-234ENST00000568472 PPP1R15AO75807 674 aaPredicted RBP32.13■■■□□ 2.73
CLN3-234ENST00000568472 NEURL4Q96JN8 1562 aa32.13■■■□□ 2.73
CLN3-234ENST00000568472 KIF1BO60333 1816 aa32.12■■■□□ 2.73
CLN3-234ENST00000568472 SPATA31E1Q6ZUB1 1445 aa32.08■■■□□ 2.73
CLN3-234ENST00000568472 MYO5BQ9ULV0 1848 aa32.07■■■□□ 2.73
CLN3-234ENST00000568472 PLEKHG1Q9ULL1 1385 aa32.07■■■□□ 2.72
CLN3-234ENST00000568472 VGFO15240 615 aaPredicted RBP32.06■■■□□ 2.72
CLN3-234ENST00000568472 DHX57Q6P158 1386 aaKnown RBP32.06■■■□□ 2.72
CLN3-234ENST00000568472 IQGAP1P46940 1657 aa32.03■■■□□ 2.72
CLN3-234ENST00000568472 RGL3Q3MIN7 710 aa32.03■■■□□ 2.72
CLN3-234ENST00000568472 BCANQ96GW7 911 aa32.03■■■□□ 2.72
CLN3-234ENST00000568472 NUTM2DQ5VT03 806 aaPredicted RBP32■■■□□ 2.71
CLN3-234ENST00000568472 NEXMIFQ5QGS0 1516 aa31.99■■■□□ 2.71
CLN3-234ENST00000568472 TBX22Q9Y458 520 aa31.96■■■□□ 2.71
CLN3-234ENST00000568472 STAC3Q96MF2 364 aa31.95■■■□□ 2.71
CLN3-234ENST00000568472 SLC26A8Q96RN1 970 aa31.94■■■□□ 2.7
CLN3-234ENST00000568472 ZNF335Q9H4Z2 1342 aaPredicted RBP31.91■■■□□ 2.7
CLN3-234ENST00000568472 SETBP1Q9Y6X0 1596 aa31.87■■■□□ 2.69
CLN3-234ENST00000568472 ADAMTS13Q76LX8 1427 aa31.87■■■□□ 2.69
CLN3-234ENST00000568472 DIP2AQ14689 1571 aa31.86■■■□□ 2.69
CLN3-234ENST00000568472 PIK3R4Q99570 1358 aa31.85■■■□□ 2.69
CLN3-234ENST00000568472 PPLO60437 1756 aa31.85■■■□□ 2.69
CLN3-234ENST00000568472 KCNA6P17658 529 aa31.83■■■□□ 2.69
CLN3-234ENST00000568472 SENP3Q9H4L4 574 aaPredicted RBP31.83■■■□□ 2.69
CLN3-234ENST00000568472 ADGRF5Q8IZF2 1346 aa31.82■■■□□ 2.68
CLN3-234ENST00000568472 LTBP4Q8N2S1 1624 aa31.82■■■□□ 2.68
CLN3-234ENST00000568472 MYOM2P54296 1465 aa31.81■■■□□ 2.68
CLN3-234ENST00000568472 DCAF11Q8TEB1 546 aa31.81■■■□□ 2.68
CLN3-234ENST00000568472 SIN3AQ96ST3 1273 aa31.81■■■□□ 2.68
CLN3-234ENST00000568472 CPS1P31327 1500 aa31.8■■■□□ 2.68
CLN3-234ENST00000568472 CLSPNQ9HAW4 1339 aa31.79■■■□□ 2.68
CLN3-234ENST00000568472 CERKQ8TCT0 537 aa31.79■■■□□ 2.68
CLN3-234ENST00000568472 IFT172Q9UG01 1749 aa31.78■■■□□ 2.68
CLN3-234ENST00000568472 NEUROD1Q13562 356 aa31.78■■■□□ 2.68
CLN3-234ENST00000568472 NRXN3Q9Y4C0 1643 aa31.75■■■□□ 2.67
CLN3-234ENST00000568472 NRXN1Q9ULB1 1477 aa31.75■■■□□ 2.67
CLN3-234ENST00000568472 PIK3C2GO75747 1445 aa31.75■■■□□ 2.67
CLN3-234ENST00000568472 KDM2AQ9Y2K7 1162 aa31.74■■■□□ 2.67
CLN3-234ENST00000568472 ALKQ9UM73 1620 aa31.71■■■□□ 2.67
CLN3-234ENST00000568472 C14orf93Q9H972 538 aaKnown RBP31.71■■■□□ 2.67
CLN3-234ENST00000568472 IQSEC2Q5JU85 1478 aa31.71■■■□□ 2.67
CLN3-234ENST00000568472 METP08581 1390 aa31.7■■■□□ 2.67
CLN3-234ENST00000568472 L3MBTL2Q969R5 705 aa31.69■■■□□ 2.66
CLN3-234ENST00000568472 AMOTL2Q9Y2J4 779 aa31.69■■■□□ 2.66
CLN3-234ENST00000568472 NKTRP30414 1462 aaKnown RBP31.69■■■□□ 2.66
CLN3-234ENST00000568472 NWD1Q149M9 1564 aa31.68■■■□□ 2.66
CLN3-234ENST00000568472 PROSER2Q86WR7 435 aaPredicted RBP31.66■■■□□ 2.66
CLN3-234ENST00000568472 CCER1Q8TC90 406 aaPredicted RBP31.66■■■□□ 2.66
CLN3-234ENST00000568472 CHD2O14647 1828 aaKnown RBP31.65■■■□□ 2.66
CLN3-234ENST00000568472 LRRC7Q96NW7 1537 aa31.64■■■□□ 2.66
CLN3-234ENST00000568472 PTPRUQ92729 1446 aa31.63■■■□□ 2.65
CLN3-234ENST00000568472 STRCP1A6NGW2 1772 aa31.62■■■□□ 2.65
CLN3-234ENST00000568472 CFAP70Q5T0N1 1121 aa31.62■■■□□ 2.65
CLN3-234ENST00000568472 TONSLQ96HA7 1378 aa31.62■■■□□ 2.65
CLN3-234ENST00000568472 NCOA3Q9Y6Q9 1424 aa31.59■■■□□ 2.65
CLN3-234ENST00000568472 LAMC1P11047 1609 aa31.59■■■□□ 2.65
CLN3-234ENST00000568472 SETD1AO15047 1707 aaKnown RBP31.58■■■□□ 2.65
CLN3-234ENST00000568472 TMEM94Q12767 1356 aa31.57■■■□□ 2.64
CLN3-234ENST00000568472 TIMELESSQ9UNS1 1208 aa31.57■■■□□ 2.64
CLN3-234ENST00000568472 PRAG1Q86YV5 1406 aa31.57■■■□□ 2.64
CLN3-234ENST00000568472 LRPPRCP42704 1394 aaKnown RBP31.56■■■□□ 2.64
CLN3-234ENST00000568472 TMEM132EQ6IEE7 984 aa31.55■■■□□ 2.64
CLN3-234ENST00000568472 ABCC11Q96J66 1382 aa31.55■■■□□ 2.64
CLN3-234ENST00000568472 XRN1Q8IZH2 1706 aaKnown RBP31.53■■■□□ 2.64
CLN3-234ENST00000568472 PTCH1Q13635 1447 aa31.52■■■□□ 2.64
CLN3-234ENST00000568472 SIRT1Q96EB6 747 aa31.51■■■□□ 2.63
CLN3-234ENST00000568472 YTHDC2Q9H6S0 1430 aaKnown RBP31.5■■■□□ 2.63
CLN3-234ENST00000568472 TECPR2O15040 1411 aa31.49■■■□□ 2.63
CLN3-234ENST00000568472 STK26Q9P289 416 aa31.49■■■□□ 2.63
CLN3-234ENST00000568472 TOM1O60784 492 aa31.48■■■□□ 2.63
CLN3-234ENST00000568472 FBXO41Q8TF61 875 aa31.48■■■□□ 2.63
CLN3-234ENST00000568472 ASXL1Q8IXJ9 1541 aa31.47■■■□□ 2.63
CLN3-234ENST00000568472 C14orf37Q86TY3 774 aa31.46■■■□□ 2.63
CLN3-234ENST00000568472 C19orf44Q9H6X5 657 aa31.46■■■□□ 2.63
CLN3-234ENST00000568472 MSH6P52701 1360 aa31.45■■■□□ 2.63
CLN3-234ENST00000568472 ROBO2Q9HCK4 1378 aa31.45■■■□□ 2.63
CLN3-234ENST00000568472 RBM33Q96EV2 1170 aaKnown RBP31.45■■■□□ 2.63
CLN3-234ENST00000568472 ADGRB1O14514 1584 aa31.44■■■□□ 2.62
CLN3-234ENST00000568472 UBAP1LF5GYI3 381 aa31.44■■■□□ 2.62
CLN3-234ENST00000568472 KIAA1210Q9ULL0 1709 aa31.44■■■□□ 2.62
CLN3-234ENST00000568472 FAM135BQ49AJ0 1406 aa31.41■■■□□ 2.62
CLN3-234ENST00000568472 CADPS2Q86UW7 1296 aa31.38■■■□□ 2.61
CLN3-234ENST00000568472 NBPF1Q3BBV0 1214 aa31.37■■■□□ 2.61
CLN3-234ENST00000568472 XIRP1Q702N8 1843 aaKnown RBP31.37■■■□□ 2.61
CLN3-234ENST00000568472 KNDC1Q76NI1 1749 aa31.36■■■□□ 2.61
CLN3-234ENST00000568472 DLC1Q96QB1 1528 aa31.36■■■□□ 2.61
CLN3-234ENST00000568472 ATF3P18847 181 aa31.36■■■□□ 2.61
CLN3-234ENST00000568472 NBPF8Q3BBV2 869 aa31.36■■■□□ 2.61
CLN3-234ENST00000568472 TRAK1Q9UPV9 953 aa31.36■■■□□ 2.61
CLN3-234ENST00000568472 DCCP43146 1447 aa31.35■■■□□ 2.61
CLN3-234ENST00000568472 ADGRL3Q9HAR2 1447 aa31.35■■■□□ 2.61
CLN3-234ENST00000568472 WAPLQ7Z5K2 1190 aa31.34■■■□□ 2.61
CLN3-234ENST00000568472 POGKQ9P215 609 aa31.33■■■□□ 2.61
CLN3-234ENST00000568472 PRAM1Q96QH2 718 aa31.32■■■□□ 2.6
CLN3-234ENST00000568472 ROCK2O75116 1388 aaKnown RBP31.31■■■□□ 2.6
CLN3-234ENST00000568472 SLAIN2Q9P270 581 aa31.29■■■□□ 2.6
CLN3-234ENST00000568472 TRPM1Q7Z4N2 1603 aa31.28■■■□□ 2.6
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms