RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 ZFYVE9O95405 1425 aa24.58■■□□□ 1.53
CLN3-229ENST00000567963 NUP155O75694 1391 aa24.58■■□□□ 1.52
CLN3-229ENST00000567963 HDGFP51858 240 aaKnown RBP24.58■■□□□ 1.52
CLN3-229ENST00000567963 TMEM131LA2VDJ0 1609 aa24.57■■□□□ 1.52
CLN3-229ENST00000567963 BCANQ96GW7 911 aa24.57■■□□□ 1.52
CLN3-229ENST00000567963 RIMS2Q9UQ26 1411 aa24.55■■□□□ 1.52
CLN3-229ENST00000567963 TMEM94Q12767 1356 aa24.54■■□□□ 1.52
CLN3-229ENST00000567963 PLEKHG1Q9ULL1 1385 aa24.54■■□□□ 1.52
CLN3-229ENST00000567963 CHGAP10645 457 aaKnown RBP24.53■■□□□ 1.52
CLN3-229ENST00000567963 PROSER2Q86WR7 435 aaPredicted RBP24.53■■□□□ 1.52
CLN3-229ENST00000567963 MED1Q15648 1581 aaPredicted RBP24.53■■□□□ 1.52
CLN3-229ENST00000567963 PPP1R15AO75807 674 aaPredicted RBP24.52■■□□□ 1.52
CLN3-229ENST00000567963 SENP3Q9H4L4 574 aaPredicted RBP24.52■■□□□ 1.52
CLN3-229ENST00000567963 NWD1Q149M9 1564 aa24.5■■□□□ 1.51
CLN3-229ENST00000567963 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.5■■□□□ 1.51
CLN3-229ENST00000567963 RBM33Q96EV2 1170 aaKnown RBP24.5■■□□□ 1.51
CLN3-229ENST00000567963 NKTRP30414 1462 aaKnown RBP24.49■■□□□ 1.51
CLN3-229ENST00000567963 RRBP1Q9P2E9 1410 aaKnown RBP24.48■■□□□ 1.51
CLN3-229ENST00000567963 TBX22Q9Y458 520 aa24.46■■□□□ 1.51
CLN3-229ENST00000567963 CHD2O14647 1828 aaKnown RBP24.46■■□□□ 1.51
CLN3-229ENST00000567963 FAM135BQ49AJ0 1406 aa24.46■■□□□ 1.51
CLN3-229ENST00000567963 NUTM2DQ5VT03 806 aaPredicted RBP24.45■■□□□ 1.51
CLN3-229ENST00000567963 ADAMTS13Q76LX8 1427 aa24.41■■□□□ 1.5
CLN3-229ENST00000567963 MSH6P52701 1360 aa24.4■■□□□ 1.5
CLN3-229ENST00000567963 SPHKAPQ2M3C7 1700 aa24.39■■□□□ 1.49
CLN3-229ENST00000567963 NAIPQ13075 1403 aa24.38■■□□□ 1.49
CLN3-229ENST00000567963 PHF23Q9BUL5 403 aaPredicted RBP24.38■■□□□ 1.49
CLN3-229ENST00000567963 ROBO1Q9Y6N7 1651 aa24.37■■□□□ 1.49
CLN3-229ENST00000567963 DIP2AQ14689 1571 aa24.37■■□□□ 1.49
CLN3-229ENST00000567963 SLAIN2Q9P270 581 aa24.36■■□□□ 1.49
CLN3-229ENST00000567963 PIK3R4Q99570 1358 aa24.35■■□□□ 1.49
CLN3-229ENST00000567963 NCOA3Q9Y6Q9 1424 aa24.35■■□□□ 1.49
CLN3-229ENST00000567963 ZNF326Q5BKZ1 582 aaKnown RBP24.31■■□□□ 1.48
CLN3-229ENST00000567963 TRPM2O94759 1503 aa24.3■■□□□ 1.48
CLN3-229ENST00000567963 AMOTL2Q9Y2J4 779 aa24.3■■□□□ 1.48
CLN3-229ENST00000567963 HFM1A2PYH4 1435 aa24.29■■□□□ 1.48
CLN3-229ENST00000567963 C14orf37Q86TY3 774 aa24.28■■□□□ 1.48
CLN3-229ENST00000567963 PTPRUQ92729 1446 aa24.28■■□□□ 1.48
CLN3-229ENST00000567963 C19orf44Q9H6X5 657 aa24.27■■□□□ 1.48
CLN3-229ENST00000567963 CLTCL1P53675 1640 aa24.27■■□□□ 1.48
CLN3-229ENST00000567963 NRXN3Q9Y4C0 1643 aa24.27■■□□□ 1.48
CLN3-229ENST00000567963 TRIM52Q96A61 297 aa24.26■■□□□ 1.47
CLN3-229ENST00000567963 SETBP1Q9Y6X0 1596 aa24.26■■□□□ 1.47
CLN3-229ENST00000567963 RGS17Q9UGC6 210 aaPredicted RBP24.25■■□□□ 1.47
CLN3-229ENST00000567963 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.24■■□□□ 1.47
CLN3-229ENST00000567963 CADPS2Q86UW7 1296 aa24.24■■□□□ 1.47
CLN3-229ENST00000567963 KIF1BO60333 1816 aa24.22■■□□□ 1.47
CLN3-229ENST00000567963 PHLPP1O60346 1717 aa24.22■■□□□ 1.47
CLN3-229ENST00000567963 ATF3P18847 181 aa24.22■■□□□ 1.47
CLN3-229ENST00000567963 NEXMIFQ5QGS0 1516 aa24.21■■□□□ 1.47
CLN3-229ENST00000567963 SLC4A1APQ9BWU0 796 aaKnown RBP24.2■■□□□ 1.47
CLN3-229ENST00000567963 METP08581 1390 aa24.2■■□□□ 1.46
CLN3-229ENST00000567963 XRN1Q8IZH2 1706 aaKnown RBP24.19■■□□□ 1.46
CLN3-229ENST00000567963 JCADQ9P266 1359 aa24.16■■□□□ 1.46
CLN3-229ENST00000567963 COL16A1Q07092 1604 aaPredicted RBP24.14■■□□□ 1.46
CLN3-229ENST00000567963 VGFO15240 615 aaPredicted RBP24.14■■□□□ 1.46
CLN3-229ENST00000567963 DCCP43146 1447 aa24.14■■□□□ 1.45
CLN3-229ENST00000567963 RPGRIP1LQ68CZ1 1315 aa24.11■■□□□ 1.45
CLN3-229ENST00000567963 BRINP3Q76B58 766 aa24.11■■□□□ 1.45
CLN3-229ENST00000567963 AHDC1Q5TGY3 1603 aaPredicted RBP24.1■■□□□ 1.45
CLN3-229ENST00000567963 FOXD1Q16676 465 aa24.09■■□□□ 1.45
CLN3-229ENST00000567963 POTEAQ6S8J7 498 aa24.09■■□□□ 1.45
CLN3-229ENST00000567963 MST1RQ04912 1400 aa24.06■■□□□ 1.44
CLN3-229ENST00000567963 SPATA31A6Q5VVP1 1343 aa24.06■■□□□ 1.44
CLN3-229ENST00000567963 ADGRL3Q9HAR2 1447 aa24.05■■□□□ 1.44
CLN3-229ENST00000567963 SETD1AO15047 1707 aaKnown RBP24.05■■□□□ 1.44
CLN3-229ENST00000567963 PPLO60437 1756 aa24.04■■□□□ 1.44
CLN3-229ENST00000567963 MPHOSPH9Q99550 1183 aa24.03■■□□□ 1.44
CLN3-229ENST00000567963 ASXL1Q8IXJ9 1541 aa24.02■■□□□ 1.44
CLN3-229ENST00000567963 NALCNQ8IZF0 1738 aa24.02■■□□□ 1.44
CLN3-229ENST00000567963 SHPRHQ149N8 1683 aa24.01■■□□□ 1.43
CLN3-229ENST00000567963 PTCH1Q13635 1447 aa24.01■■□□□ 1.43
CLN3-229ENST00000567963 LRP6O75581 1613 aa24■■□□□ 1.43
CLN3-229ENST00000567963 CCDC144AA2RUR9 1427 aa24■■□□□ 1.43
CLN3-229ENST00000567963 ROBO2Q9HCK4 1378 aa23.99■■□□□ 1.43
CLN3-229ENST00000567963 RGL3Q3MIN7 710 aa23.97■■□□□ 1.43
CLN3-229ENST00000567963 NHSL1Q5SYE7 1610 aa23.97■■□□□ 1.43
CLN3-229ENST00000567963 PRAG1Q86YV5 1406 aa23.97■■□□□ 1.43
CLN3-229ENST00000567963 SETD5Q9C0A6 1442 aa23.97■■□□□ 1.43
CLN3-229ENST00000567963 MEX3CQ5U5Q3 659 aaKnown RBP23.96■■□□□ 1.43
CLN3-229ENST00000567963 ADGRF5Q8IZF2 1346 aa23.96■■□□□ 1.43
CLN3-229ENST00000567963 SPATA31E1Q6ZUB1 1445 aa23.95■■□□□ 1.42
CLN3-229ENST00000567963 LRRC59Q96AG4 307 aaKnown RBP23.95■■□□□ 1.42
CLN3-229ENST00000567963 ACIN1Q9UKV3 1341 aaKnown RBP23.95■■□□□ 1.42
CLN3-229ENST00000567963 DDX17Q92841 729 aaKnown RBP23.94■■□□□ 1.42
CLN3-229ENST00000567963 C1orf167Q5SNV9 1468 aa23.93■■□□□ 1.42
CLN3-229ENST00000567963 ANKRD30BQ9BXX2 1392 aa23.92■■□□□ 1.42
CLN3-229ENST00000567963 NUTM2BA6NNL0 878 aaPredicted RBP23.91■■□□□ 1.42
CLN3-229ENST00000567963 NUTM2EB1AL46 878 aaPredicted RBP23.91■■□□□ 1.42
CLN3-229ENST00000567963 ZNF772Q68DY9 489 aaPredicted RBP23.91■■□□□ 1.42
CLN3-229ENST00000567963 NUTM2AQ8IVF1 878 aaPredicted RBP23.91■■□□□ 1.42
CLN3-229ENST00000567963 IFT172Q9UG01 1749 aa23.9■■□□□ 1.42
CLN3-229ENST00000567963 ORAI2Q96SN7 254 aa23.88■■□□□ 1.41
CLN3-229ENST00000567963 LAMC1P11047 1609 aa23.85■■□□□ 1.41
CLN3-229ENST00000567963 PNPLA6Q8IY17 1366 aa23.85■■□□□ 1.41
CLN3-229ENST00000567963 STK26Q9P289 416 aa23.84■■□□□ 1.41
CLN3-229ENST00000567963 PIK3C2GO75747 1445 aa23.84■■□□□ 1.41
CLN3-229ENST00000567963 TMEM132EQ6IEE7 984 aa23.83■■□□□ 1.41
CLN3-229ENST00000567963 SOS2Q07890 1332 aaPredicted RBP23.83■■□□□ 1.41
CLN3-229ENST00000567963 TECPR2O15040 1411 aa23.83■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms