RNA–Protein interactions for RNA: ENST00000567674.1

CDH3-206, Transcript of cadherin 3, humanhuman

TSL 3

Gene CDH3, Length 892 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-206ENST00000567674 NAIPQ13075 1403 aa16.89■□□□□ 0.29
CDH3-206ENST00000567674 ITGAEP38570 1179 aa16.89■□□□□ 0.29
CDH3-206ENST00000567674 SENP3Q9H4L4 574 aaPredicted RBP16.89■□□□□ 0.29
CDH3-206ENST00000567674 PPARGC1BQ86YN6 1023 aaKnown RBP16.88■□□□□ 0.29
CDH3-206ENST00000567674 LRRC7Q96NW7 1537 aa16.86■□□□□ 0.29
CDH3-206ENST00000567674 PLEKHG1Q9ULL1 1385 aa16.86■□□□□ 0.29
CDH3-206ENST00000567674 ZFYVE9O95405 1425 aa16.86■□□□□ 0.29
CDH3-206ENST00000567674 E9PCH4 1651 aa16.85■□□□□ 0.29
CDH3-206ENST00000567674 KCNA6P17658 529 aa16.85■□□□□ 0.29
CDH3-206ENST00000567674 POTEAQ6S8J7 498 aa16.85■□□□□ 0.29
CDH3-206ENST00000567674 TBX22Q9Y458 520 aa16.84■□□□□ 0.29
CDH3-206ENST00000567674 TMEM131LA2VDJ0 1609 aa16.84■□□□□ 0.29
CDH3-206ENST00000567674 PIK3R4Q99570 1358 aa16.83■□□□□ 0.28
CDH3-206ENST00000567674 RIMS2Q9UQ26 1411 aa16.81■□□□□ 0.28
CDH3-206ENST00000567674 NCOA3Q9Y6Q9 1424 aa16.81■□□□□ 0.28
CDH3-206ENST00000567674 NKTRP30414 1462 aaKnown RBP16.79■□□□□ 0.28
CDH3-206ENST00000567674 PPP1R15AO75807 674 aaPredicted RBP16.78■□□□□ 0.28
CDH3-206ENST00000567674 STRCP1A6NGW2 1772 aa16.78■□□□□ 0.28
CDH3-206ENST00000567674 DIP2AQ14689 1571 aa16.77■□□□□ 0.28
CDH3-206ENST00000567674 FAM135BQ49AJ0 1406 aa16.76■□□□□ 0.27
CDH3-206ENST00000567674 SPHKAPQ2M3C7 1700 aa16.76■□□□□ 0.27
CDH3-206ENST00000567674 TRPM2O94759 1503 aa16.75■□□□□ 0.27
CDH3-206ENST00000567674 SLC26A8Q96RN1 970 aa16.75■□□□□ 0.27
CDH3-206ENST00000567674 NWD1Q149M9 1564 aa16.75■□□□□ 0.27
CDH3-206ENST00000567674 RPGRIP1LQ68CZ1 1315 aa16.74■□□□□ 0.27
CDH3-206ENST00000567674 CHGAP10645 457 aaKnown RBP16.74■□□□□ 0.27
CDH3-206ENST00000567674 SLC4A1APQ9BWU0 796 aaKnown RBP16.74■□□□□ 0.27
CDH3-206ENST00000567674 TRIM52Q96A61 297 aa16.73■□□□□ 0.27
CDH3-206ENST00000567674 BCANQ96GW7 911 aa16.73■□□□□ 0.27
CDH3-206ENST00000567674 HRCP23327 699 aa16.72■□□□□ 0.27
CDH3-206ENST00000567674 SETD1AO15047 1707 aaKnown RBP16.71■□□□□ 0.27
CDH3-206ENST00000567674 PROSER2Q86WR7 435 aaPredicted RBP16.71■□□□□ 0.27
CDH3-206ENST00000567674 ADAMTS13Q76LX8 1427 aa16.7■□□□□ 0.26
CDH3-206ENST00000567674 TMEM94Q12767 1356 aa16.7■□□□□ 0.26
CDH3-206ENST00000567674 VGFO15240 615 aaPredicted RBP16.7■□□□□ 0.26
CDH3-206ENST00000567674 CHD2O14647 1828 aaKnown RBP16.69■□□□□ 0.26
CDH3-206ENST00000567674 MYO5BQ9ULV0 1848 aa16.69■□□□□ 0.26
CDH3-206ENST00000567674 SETBP1Q9Y6X0 1596 aa16.68■□□□□ 0.26
CDH3-206ENST00000567674 UPF1Q92900 1129 aaKnown RBP eCLIP16.68■□□□□ 0.26
CDH3-206ENST00000567674 ZNF326Q5BKZ1 582 aaKnown RBP16.67■□□□□ 0.26
CDH3-206ENST00000567674 MSH6P52701 1360 aa16.66■□□□□ 0.26
CDH3-206ENST00000567674 SETD5Q9C0A6 1442 aa16.66■□□□□ 0.26
CDH3-206ENST00000567674 MPHOSPH9Q99550 1183 aa16.65■□□□□ 0.26
CDH3-206ENST00000567674 KIF1BO60333 1816 aa16.65■□□□□ 0.26
CDH3-206ENST00000567674 CLTCL1P53675 1640 aa16.64■□□□□ 0.25
CDH3-206ENST00000567674 C19orf44Q9H6X5 657 aa16.64■□□□□ 0.25
CDH3-206ENST00000567674 XIRP1Q702N8 1843 aaKnown RBP16.63■□□□□ 0.25
CDH3-206ENST00000567674 CADPS2Q86UW7 1296 aa16.63■□□□□ 0.25
CDH3-206ENST00000567674 NEXMIFQ5QGS0 1516 aa16.62■□□□□ 0.25
CDH3-206ENST00000567674 AMOTL2Q9Y2J4 779 aa16.62■□□□□ 0.25
CDH3-206ENST00000567674 ROBO1Q9Y6N7 1651 aa16.62■□□□□ 0.25
CDH3-206ENST00000567674 CCDC144AA2RUR9 1427 aa16.62■□□□□ 0.25
CDH3-206ENST00000567674 DCCP43146 1447 aa16.62■□□□□ 0.25
CDH3-206ENST00000567674 SLAIN2Q9P270 581 aa16.61■□□□□ 0.25
CDH3-206ENST00000567674 PRAG1Q86YV5 1406 aa16.61■□□□□ 0.25
CDH3-206ENST00000567674 ANKRD30BQ9BXX2 1392 aa16.6■□□□□ 0.25
CDH3-206ENST00000567674 JCADQ9P266 1359 aa16.6■□□□□ 0.25
CDH3-206ENST00000567674 STAC3Q96MF2 364 aa16.59■□□□□ 0.25
CDH3-206ENST00000567674 NRXN3Q9Y4C0 1643 aa16.57■□□□□ 0.24
CDH3-206ENST00000567674 NUTM2DQ5VT03 806 aaPredicted RBP16.57■□□□□ 0.24
CDH3-206ENST00000567674 ZNF772Q68DY9 489 aaPredicted RBP16.57■□□□□ 0.24
CDH3-206ENST00000567674 ATF3P18847 181 aa16.56■□□□□ 0.24
CDH3-206ENST00000567674 SPATA31E1Q6ZUB1 1445 aa16.55■□□□□ 0.24
CDH3-206ENST00000567674 PTPRUQ92729 1446 aa16.55■□□□□ 0.24
CDH3-206ENST00000567674 METP08581 1390 aa16.54■□□□□ 0.24
CDH3-206ENST00000567674 RAB3GAP2Q9H2M9 1393 aa16.54■□□□□ 0.24
CDH3-206ENST00000567674 XRN1Q8IZH2 1706 aaKnown RBP16.54■□□□□ 0.24
CDH3-206ENST00000567674 PTCH1Q13635 1447 aa16.53■□□□□ 0.24
CDH3-206ENST00000567674 C14orf37Q86TY3 774 aa16.53■□□□□ 0.24
CDH3-206ENST00000567674 SRCAPQ6ZRS2 3230 aa16.53■□□□□ 0.24
CDH3-206ENST00000567674 SPATA31A6Q5VVP1 1343 aa16.52■□□□□ 0.24
CDH3-206ENST00000567674 PHLPP1O60346 1717 aa16.52■□□□□ 0.24
CDH3-206ENST00000567674 CDK12Q9NYV4 1490 aaPredicted RBP16.51■□□□□ 0.23
CDH3-206ENST00000567674 RXRBP28702 533 aa16.5■□□□□ 0.23
CDH3-206ENST00000567674 MEX3CQ5U5Q3 659 aaKnown RBP16.5■□□□□ 0.23
CDH3-206ENST00000567674 SIRT1Q96EB6 747 aa16.5■□□□□ 0.23
CDH3-206ENST00000567674 PPLO60437 1756 aa16.5■□□□□ 0.23
CDH3-206ENST00000567674 LRP6O75581 1613 aa16.48■□□□□ 0.23
CDH3-206ENST00000567674 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.48■□□□□ 0.23
CDH3-206ENST00000567674 ADGRL3Q9HAR2 1447 aa16.48■□□□□ 0.23
CDH3-206ENST00000567674 FOXD1Q16676 465 aa16.48■□□□□ 0.23
CDH3-206ENST00000567674 RBM33Q96EV2 1170 aaKnown RBP16.48■□□□□ 0.23
CDH3-206ENST00000567674 COL16A1Q07092 1604 aaPredicted RBP16.46■□□□□ 0.23
CDH3-206ENST00000567674 ABCC11Q96J66 1382 aa16.46■□□□□ 0.23
CDH3-206ENST00000567674 TECPR2O15040 1411 aa16.45■□□□□ 0.22
CDH3-206ENST00000567674 AHDC1Q5TGY3 1603 aaPredicted RBP16.45■□□□□ 0.22
CDH3-206ENST00000567674 PIK3C2GO75747 1445 aa16.45■□□□□ 0.22
CDH3-206ENST00000567674 MYOM2P54296 1465 aa16.44■□□□□ 0.22
CDH3-206ENST00000567674 RGL3Q3MIN7 710 aa16.44■□□□□ 0.22
CDH3-206ENST00000567674 C14orf93Q9H972 538 aaKnown RBP16.44■□□□□ 0.22
CDH3-206ENST00000567674 ADGRF5Q8IZF2 1346 aa16.44■□□□□ 0.22
CDH3-206ENST00000567674 NRXN1Q9ULB1 1477 aa16.43■□□□□ 0.22
CDH3-206ENST00000567674 BRINP3Q76B58 766 aa16.43■□□□□ 0.22
CDH3-206ENST00000567674 IFT172Q9UG01 1749 aa16.42■□□□□ 0.22
CDH3-206ENST00000567674 LRPPRCP42704 1394 aaKnown RBP16.42■□□□□ 0.22
CDH3-206ENST00000567674 MST1RQ04912 1400 aa16.42■□□□□ 0.22
CDH3-206ENST00000567674 ROBO2Q9HCK4 1378 aa16.4■□□□□ 0.22
CDH3-206ENST00000567674 SHPRHQ149N8 1683 aa16.4■□□□□ 0.22
CDH3-206ENST00000567674 LRRC59Q96AG4 307 aaKnown RBP16.39■□□□□ 0.21
CDH3-206ENST00000567674 DHX57Q6P158 1386 aaKnown RBP16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms