RNA–Protein interactions for RNA: ENST00000567111.1

E4F1-208, Transcript of E4F transcription factor 1, human

TSL 2

Gene E4F1, Length 691 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
E4F1-208	ENST00000567111	LTK	P29376	864 aa		32.91	■■■□□ 2.86
E4F1-208	ENST00000567111	RIMS2	Q9UQ26	1411 aa		32.91	■■■□□ 2.86
E4F1-208	ENST00000567111	SCAF11	Q99590	1463 aa	Known RBP	32.88	■■■□□ 2.85
E4F1-208	ENST00000567111	STRC	Q7RTU9	1775 aa		32.87	■■■□□ 2.85
E4F1-208	ENST00000567111	BCAN	Q96GW7	911 aa		32.86	■■■□□ 2.85
E4F1-208	ENST00000567111	VGF	O15240	615 aa	Predicted RBP	32.85	■■■□□ 2.85
E4F1-208	ENST00000567111	SPATA31E1	Q6ZUB1	1445 aa		32.85	■■■□□ 2.85
E4F1-208	ENST00000567111	ZFYVE9	O95405	1425 aa		32.84	■■■□□ 2.85
E4F1-208	ENST00000567111	NUTM2D	Q5VT03	806 aa	Predicted RBP	32.83	■■■□□ 2.85
E4F1-208	ENST00000567111	NEURL4	Q96JN8	1562 aa		32.83	■■■□□ 2.85
E4F1-208	ENST00000567111	POLR1A	O95602	1720 aa	Predicted RBP	32.82	■■■□□ 2.85
E4F1-208	ENST00000567111	NPHP4	O75161	1426 aa	Predicted RBP	32.82	■■■□□ 2.84
E4F1-208	ENST00000567111	MED14	O60244	1454 aa		32.81	■■■□□ 2.84
E4F1-208	ENST00000567111	NEUROD1	Q13562	356 aa		32.81	■■■□□ 2.84
E4F1-208	ENST00000567111	SIN3A	Q96ST3	1273 aa		32.8	■■■□□ 2.84
E4F1-208	ENST00000567111	CCER1	Q8TC90	406 aa	Predicted RBP	32.79	■■■□□ 2.84
E4F1-208	ENST00000567111	STAC3	Q96MF2	364 aa		32.77	■■■□□ 2.84
E4F1-208	ENST00000567111	PLEKHG1	Q9ULL1	1385 aa		32.76	■■■□□ 2.83
E4F1-208	ENST00000567111	CLSPN	Q9HAW4	1339 aa		32.76	■■■□□ 2.83
E4F1-208	ENST00000567111	NEXMIF	Q5QGS0	1516 aa		32.73	■■■□□ 2.83
E4F1-208	ENST00000567111	DCAF11	Q8TEB1	546 aa		32.71	■■■□□ 2.83
E4F1-208	ENST00000567111	IQGAP1	P46940	1657 aa		32.69	■■■□□ 2.82
E4F1-208	ENST00000567111	SENP3	Q9H4L4	574 aa	Predicted RBP	32.69	■■■□□ 2.82
E4F1-208	ENST00000567111	SLC26A8	Q96RN1	970 aa		32.68	■■■□□ 2.82
E4F1-208	ENST00000567111	KDM2A	Q9Y2K7	1162 aa		32.67	■■■□□ 2.82
E4F1-208	ENST00000567111	TBX22	Q9Y458	520 aa		32.67	■■■□□ 2.82
E4F1-208	ENST00000567111	PPL	O60437	1756 aa		32.67	■■■□□ 2.82
E4F1-208	ENST00000567111	ADGRF5	Q8IZF2	1346 aa		32.63	■■■□□ 2.81
E4F1-208	ENST00000567111	L3MBTL2	Q969R5	705 aa		32.6	■■■□□ 2.81
E4F1-208	ENST00000567111	TONSL	Q96HA7	1378 aa		32.58	■■■□□ 2.81
E4F1-208	ENST00000567111	IFT172	Q9UG01	1749 aa		32.58	■■■□□ 2.81
E4F1-208	ENST00000567111	MYOM2	P54296	1465 aa		32.57	■■■□□ 2.8
E4F1-208	ENST00000567111	SETBP1	Q9Y6X0	1596 aa		32.56	■■■□□ 2.8
E4F1-208	ENST00000567111	ADAMTS13	Q76LX8	1427 aa		32.55	■■■□□ 2.8
E4F1-208	ENST00000567111	TIMELESS	Q9UNS1	1208 aa		32.53	■■■□□ 2.8
E4F1-208	ENST00000567111	DIP2A	Q14689	1571 aa		32.53	■■■□□ 2.8
E4F1-208	ENST00000567111	KCNA6	P17658	529 aa		32.52	■■■□□ 2.8
E4F1-208	ENST00000567111	PIK3R4	Q99570	1358 aa		32.52	■■■□□ 2.8
E4F1-208	ENST00000567111	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	32.51	■■■□□ 2.8
E4F1-208	ENST00000567111	C14orf93	Q9H972	538 aa	Known RBP	32.5	■■■□□ 2.79
E4F1-208	ENST00000567111	PIK3C2G	O75747	1445 aa		32.49	■■■□□ 2.79
E4F1-208	ENST00000567111	NRXN1	Q9ULB1	1477 aa		32.48	■■■□□ 2.79
E4F1-208	ENST00000567111	ILDR1	Q86SU0	546 aa	Predicted RBP	32.47	■■■□□ 2.79
E4F1-208	ENST00000567111	ALK	Q9UM73	1620 aa		32.47	■■■□□ 2.79
E4F1-208	ENST00000567111	NRXN3	Q9Y4C0	1643 aa		32.46	■■■□□ 2.79
E4F1-208	ENST00000567111	CFAP70	Q5T0N1	1121 aa		32.45	■■■□□ 2.79
E4F1-208	ENST00000567111	AMOTL2	Q9Y2J4	779 aa		32.43	■■■□□ 2.78
E4F1-208	ENST00000567111	MET	P08581	1390 aa		32.43	■■■□□ 2.78
E4F1-208	ENST00000567111	PROSER2	Q86WR7	435 aa	Predicted RBP	32.38	■■■□□ 2.77
E4F1-208	ENST00000567111	CHD2	O14647	1828 aa	Known RBP	32.37	■■■□□ 2.77
E4F1-208	ENST00000567111	CPS1	P31327	1500 aa		32.37	■■■□□ 2.77
E4F1-208	ENST00000567111	PRAG1	Q86YV5	1406 aa		32.37	■■■□□ 2.77
E4F1-208	ENST00000567111	TMEM132E	Q6IEE7	984 aa		32.37	■■■□□ 2.77
E4F1-208	ENST00000567111	LAMC1	P11047	1609 aa		32.36	■■■□□ 2.77
E4F1-208	ENST00000567111	LTBP4	Q8N2S1	1624 aa		32.35	■■■□□ 2.77
E4F1-208	ENST00000567111	CERK	Q8TCT0	537 aa		32.33	■■■□□ 2.77
E4F1-208	ENST00000567111	STK26	Q9P289	416 aa		32.32	■■■□□ 2.76
E4F1-208	ENST00000567111	PTPRU	Q92729	1446 aa		32.32	■■■□□ 2.76
E4F1-208	ENST00000567111	SETD1A	O15047	1707 aa	Known RBP	32.31	■■■□□ 2.76
E4F1-208	ENST00000567111	NWD1	Q149M9	1564 aa		32.3	■■■□□ 2.76
E4F1-208	ENST00000567111	LRPPRC	P42704	1394 aa	Known RBP	32.3	■■■□□ 2.76
E4F1-208	ENST00000567111	NKTR	P30414	1462 aa	Known RBP	32.29	■■■□□ 2.76
E4F1-208	ENST00000567111	STRCP1	A6NGW2	1772 aa		32.28	■■■□□ 2.76
E4F1-208	ENST00000567111	KIAA1210	Q9ULL0	1709 aa		32.27	■■■□□ 2.76
E4F1-208	ENST00000567111	NBPF8	Q3BBV2	869 aa		32.27	■■■□□ 2.76
E4F1-208	ENST00000567111	ABCC11	Q96J66	1382 aa		32.27	■■■□□ 2.76
E4F1-208	ENST00000567111	YTHDC2	Q9H6S0	1430 aa	Known RBP	32.26	■■■□□ 2.76
E4F1-208	ENST00000567111	SIRT1	Q96EB6	747 aa		32.25	■■■□□ 2.75
E4F1-208	ENST00000567111	NBPF1	Q3BBV0	1214 aa		32.24	■■■□□ 2.75
E4F1-208	ENST00000567111	LRRC7	Q96NW7	1537 aa		32.24	■■■□□ 2.75
E4F1-208	ENST00000567111	C14orf37	Q86TY3	774 aa		32.23	■■■□□ 2.75
E4F1-208	ENST00000567111	TMEM94	Q12767	1356 aa		32.22	■■■□□ 2.75
E4F1-208	ENST00000567111	XRN1	Q8IZH2	1706 aa	Known RBP	32.21	■■■□□ 2.75
E4F1-208	ENST00000567111	NCOA3	Q9Y6Q9	1424 aa		32.2	■■■□□ 2.75
E4F1-208	ENST00000567111	TRAK1	Q9UPV9	953 aa		32.2	■■■□□ 2.75
E4F1-208	ENST00000567111	ASXL1	Q8IXJ9	1541 aa		32.19	■■■□□ 2.74
E4F1-208	ENST00000567111	ADGRB1	O14514	1584 aa		32.19	■■■□□ 2.74
E4F1-208	ENST00000567111	ROCK2	O75116	1388 aa	Known RBP	32.19	■■■□□ 2.74
E4F1-208	ENST00000567111	IQSEC2	Q5JU85	1478 aa		32.18	■■■□□ 2.74
E4F1-208	ENST00000567111	RBM33	Q96EV2	1170 aa	Known RBP	32.18	■■■□□ 2.74
E4F1-208	ENST00000567111	TECPR2	O15040	1411 aa		32.17	■■■□□ 2.74
E4F1-208	ENST00000567111	PTCH1	Q13635	1447 aa		32.17	■■■□□ 2.74
E4F1-208	ENST00000567111	POGK	Q9P215	609 aa		32.17	■■■□□ 2.74
E4F1-208	ENST00000567111	ROBO2	Q9HCK4	1378 aa		32.17	■■■□□ 2.74
E4F1-208	ENST00000567111	TRPM1	Q7Z4N2	1603 aa		32.15	■■■□□ 2.74
E4F1-208	ENST00000567111	C19orf44	Q9H6X5	657 aa		32.14	■■■□□ 2.74
E4F1-208	ENST00000567111	FAM135B	Q49AJ0	1406 aa		32.13	■■■□□ 2.73
E4F1-208	ENST00000567111	WAPL	Q7Z5K2	1190 aa		32.13	■■■□□ 2.73
E4F1-208	ENST00000567111	CARD11	Q9BXL7	1154 aa		32.13	■■■□□ 2.73
E4F1-208	ENST00000567111	MSH6	P52701	1360 aa		32.11	■■■□□ 2.73
E4F1-208	ENST00000567111	PRAM1	Q96QH2	718 aa		32.11	■■■□□ 2.73
E4F1-208	ENST00000567111	KNDC1	Q76NI1	1749 aa		32.1	■■■□□ 2.73
E4F1-208	ENST00000567111	DLC1	Q96QB1	1528 aa		32.1	■■■□□ 2.73
E4F1-208	ENST00000567111	RALGAPB	Q86X10	1494 aa		32.09	■■■□□ 2.73
E4F1-208	ENST00000567111	TOM1	O60784	492 aa		32.08	■■■□□ 2.73
E4F1-208	ENST00000567111	GPRASP1	Q5JY77	1395 aa		32.07	■■■□□ 2.73
E4F1-208	ENST00000567111	ATF3	P18847	181 aa		32.07	■■■□□ 2.72
E4F1-208	ENST00000567111	UBAP1L	F5GYI3	381 aa		32.04	■■■□□ 2.72
E4F1-208	ENST00000567111	SAFB2	Q14151	953 aa	Known RBP eCLIP	32.04	■■■□□ 2.72
E4F1-208	ENST00000567111	CADPS2	Q86UW7	1296 aa		32.04	■■■□□ 2.72

Retrieved 100 of 20,778 RNA–protein pairs in 77.5 ms