RNA–Protein interactions for RNA: ENST00000567023.5

COMMD4-216, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 926 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-216ENST00000567023 SLC26A8Q96RN1 970 aa21.7■■□□□ 1.06
COMMD4-216ENST00000567023 RIMS2Q9UQ26 1411 aa21.67■■□□□ 1.06
COMMD4-216ENST00000567023 PLEKHG1Q9ULL1 1385 aa21.67■■□□□ 1.06
COMMD4-216ENST00000567023 MYO5BQ9ULV0 1848 aa21.66■■□□□ 1.06
COMMD4-216ENST00000567023 XIRP1Q702N8 1843 aaKnown RBP21.65■■□□□ 1.06
COMMD4-216ENST00000567023 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.65■■□□□ 1.06
COMMD4-216ENST00000567023 ILDR2Q71H61 639 aa21.64■■□□□ 1.05
COMMD4-216ENST00000567023 NAIPQ13075 1403 aa21.63■■□□□ 1.05
COMMD4-216ENST00000567023 TMEM94Q12767 1356 aa21.62■■□□□ 1.05
COMMD4-216ENST00000567023 BCANQ96GW7 911 aa21.62■■□□□ 1.05
COMMD4-216ENST00000567023 NWD1Q149M9 1564 aa21.61■■□□□ 1.05
COMMD4-216ENST00000567023 NKTRP30414 1462 aaKnown RBP21.61■■□□□ 1.05
COMMD4-216ENST00000567023 PPP1R15AO75807 674 aaPredicted RBP21.61■■□□□ 1.05
COMMD4-216ENST00000567023 CHGAP10645 457 aaKnown RBP21.61■■□□□ 1.05
COMMD4-216ENST00000567023 TBX22Q9Y458 520 aa21.61■■□□□ 1.05
COMMD4-216ENST00000567023 PROSER2Q86WR7 435 aaPredicted RBP21.6■■□□□ 1.05
COMMD4-216ENST00000567023 CHD2O14647 1828 aaKnown RBP21.56■■□□□ 1.04
COMMD4-216ENST00000567023 HFM1A2PYH4 1435 aa21.55■■□□□ 1.04
COMMD4-216ENST00000567023 FAM135BQ49AJ0 1406 aa21.55■■□□□ 1.04
COMMD4-216ENST00000567023 ADAMTS13Q76LX8 1427 aa21.55■■□□□ 1.04
COMMD4-216ENST00000567023 SPHKAPQ2M3C7 1700 aa21.55■■□□□ 1.04
COMMD4-216ENST00000567023 PIK3R4Q99570 1358 aa21.53■■□□□ 1.04
COMMD4-216ENST00000567023 NUTM2DQ5VT03 806 aaPredicted RBP21.53■■□□□ 1.04
COMMD4-216ENST00000567023 RBM33Q96EV2 1170 aaKnown RBP21.53■■□□□ 1.04
COMMD4-216ENST00000567023 SENP3Q9H4L4 574 aaPredicted RBP21.53■■□□□ 1.04
COMMD4-216ENST00000567023 DIP2AQ14689 1571 aa21.53■■□□□ 1.04
COMMD4-216ENST00000567023 SOCS7O14512 581 aa21.51■■□□□ 1.03
COMMD4-216ENST00000567023 NCOA3Q9Y6Q9 1424 aa21.51■■□□□ 1.03
COMMD4-216ENST00000567023 MED1Q15648 1581 aaPredicted RBP21.51■■□□□ 1.03
COMMD4-216ENST00000567023 MSH6P52701 1360 aa21.49■■□□□ 1.03
COMMD4-216ENST00000567023 TRPM2O94759 1503 aa21.49■■□□□ 1.03
COMMD4-216ENST00000567023 CLTCL1P53675 1640 aa21.45■■□□□ 1.02
COMMD4-216ENST00000567023 TRIM52Q96A61 297 aa21.45■■□□□ 1.02
COMMD4-216ENST00000567023 SLAIN2Q9P270 581 aa21.45■■□□□ 1.02
COMMD4-216ENST00000567023 SETBP1Q9Y6X0 1596 aa21.44■■□□□ 1.02
COMMD4-216ENST00000567023 ZNF326Q5BKZ1 582 aaKnown RBP21.44■■□□□ 1.02
COMMD4-216ENST00000567023 AMOTL2Q9Y2J4 779 aa21.43■■□□□ 1.02
COMMD4-216ENST00000567023 NRXN3Q9Y4C0 1643 aa21.43■■□□□ 1.02
COMMD4-216ENST00000567023 ROBO1Q9Y6N7 1651 aa21.43■■□□□ 1.02
COMMD4-216ENST00000567023 PTPRUQ92729 1446 aa21.42■■□□□ 1.02
COMMD4-216ENST00000567023 SLC4A1APQ9BWU0 796 aaKnown RBP21.42■■□□□ 1.02
COMMD4-216ENST00000567023 C19orf44Q9H6X5 657 aa21.41■■□□□ 1.02
COMMD4-216ENST00000567023 NEXMIFQ5QGS0 1516 aa21.4■■□□□ 1.02
COMMD4-216ENST00000567023 KIF1BO60333 1816 aa21.39■■□□□ 1.02
COMMD4-216ENST00000567023 CADPS2Q86UW7 1296 aa21.38■■□□□ 1.01
COMMD4-216ENST00000567023 METP08581 1390 aa21.36■■□□□ 1.01
COMMD4-216ENST00000567023 C14orf37Q86TY3 774 aa21.36■■□□□ 1.01
COMMD4-216ENST00000567023 PHF23Q9BUL5 403 aaPredicted RBP21.36■■□□□ 1.01
COMMD4-216ENST00000567023 XRN1Q8IZH2 1706 aaKnown RBP21.35■■□□□ 1.01
COMMD4-216ENST00000567023 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.35■■□□□ 1.01
COMMD4-216ENST00000567023 RPGRIP1LQ68CZ1 1315 aa21.35■■□□□ 1.01
COMMD4-216ENST00000567023 VGFO15240 615 aaPredicted RBP21.35■■□□□ 1.01
COMMD4-216ENST00000567023 ATF3P18847 181 aa21.34■■□□□ 1.01
COMMD4-216ENST00000567023 ACIN1Q9UKV3 1341 aaKnown RBP21.32■■□□□ 1
COMMD4-216ENST00000567023 DCCP43146 1447 aa21.32■■□□□ 1
COMMD4-216ENST00000567023 MPHOSPH9Q99550 1183 aa21.3■■□□□ 1
COMMD4-216ENST00000567023 FOXD1Q16676 465 aa21.29■■□□□ 1
COMMD4-216ENST00000567023 RGS17Q9UGC6 210 aaPredicted RBP21.29■■□□□ 1
COMMD4-216ENST00000567023 PHLPP1O60346 1717 aa21.29■■□□□ 1
COMMD4-216ENST00000567023 JCADQ9P266 1359 aa21.27■■□□□ 1
COMMD4-216ENST00000567023 CCDC144AA2RUR9 1427 aa21.25■□□□□ 0.99
COMMD4-216ENST00000567023 COL16A1Q07092 1604 aaPredicted RBP21.25■□□□□ 0.99
COMMD4-216ENST00000567023 SETD1AO15047 1707 aaKnown RBP21.24■□□□□ 0.99
COMMD4-216ENST00000567023 PRAG1Q86YV5 1406 aa21.24■□□□□ 0.99
COMMD4-216ENST00000567023 PPLO60437 1756 aa21.24■□□□□ 0.99
COMMD4-216ENST00000567023 BRINP3Q76B58 766 aa21.24■□□□□ 0.99
COMMD4-216ENST00000567023 AHDC1Q5TGY3 1603 aaPredicted RBP21.24■□□□□ 0.99
COMMD4-216ENST00000567023 ADGRL3Q9HAR2 1447 aa21.23■□□□□ 0.99
COMMD4-216ENST00000567023 MST1RQ04912 1400 aa21.22■□□□□ 0.99
COMMD4-216ENST00000567023 PTCH1Q13635 1447 aa21.22■□□□□ 0.99
COMMD4-216ENST00000567023 SPATA31E1Q6ZUB1 1445 aa21.22■□□□□ 0.99
COMMD4-216ENST00000567023 SETD5Q9C0A6 1442 aa21.22■□□□□ 0.99
COMMD4-216ENST00000567023 SPATA31A6Q5VVP1 1343 aa21.19■□□□□ 0.98
COMMD4-216ENST00000567023 ANKRD30BQ9BXX2 1392 aa21.19■□□□□ 0.98
COMMD4-216ENST00000567023 ROBO2Q9HCK4 1378 aa21.18■□□□□ 0.98
COMMD4-216ENST00000567023 RGL3Q3MIN7 710 aa21.17■□□□□ 0.98
COMMD4-216ENST00000567023 ADGRF5Q8IZF2 1346 aa21.17■□□□□ 0.98
COMMD4-216ENST00000567023 ASXL1Q8IXJ9 1541 aa21.17■□□□□ 0.98
COMMD4-216ENST00000567023 NALCNQ8IZF0 1738 aa21.17■□□□□ 0.98
COMMD4-216ENST00000567023 POTEAQ6S8J7 498 aa21.14■□□□□ 0.97
COMMD4-216ENST00000567023 RAB3GAP2Q9H2M9 1393 aa21.13■□□□□ 0.97
COMMD4-216ENST00000567023 IFT172Q9UG01 1749 aa21.13■□□□□ 0.97
COMMD4-216ENST00000567023 SHPRHQ149N8 1683 aa21.13■□□□□ 0.97
COMMD4-216ENST00000567023 NHSL1Q5SYE7 1610 aa21.12■□□□□ 0.97
COMMD4-216ENST00000567023 C1orf167Q5SNV9 1468 aa21.12■□□□□ 0.97
COMMD4-216ENST00000567023 PIK3C2GO75747 1445 aa21.11■□□□□ 0.97
COMMD4-216ENST00000567023 LRP6O75581 1613 aa21.11■□□□□ 0.97
COMMD4-216ENST00000567023 LRRC59Q96AG4 307 aaKnown RBP21.1■□□□□ 0.97
COMMD4-216ENST00000567023 TECPR2O15040 1411 aa21.09■□□□□ 0.97
COMMD4-216ENST00000567023 HRCP23327 699 aa21.08■□□□□ 0.97
COMMD4-216ENST00000567023 LRPPRCP42704 1394 aaKnown RBP21.08■□□□□ 0.96
COMMD4-216ENST00000567023 ABCC11Q96J66 1382 aa21.08■□□□□ 0.96
COMMD4-216ENST00000567023 DDX17Q92841 729 aaKnown RBP21.06■□□□□ 0.96
COMMD4-216ENST00000567023 LAMC1P11047 1609 aa21.06■□□□□ 0.96
COMMD4-216ENST00000567023 NRXN1Q9ULB1 1477 aa21.05■□□□□ 0.96
COMMD4-216ENST00000567023 MEX3CQ5U5Q3 659 aaKnown RBP21.04■□□□□ 0.96
COMMD4-216ENST00000567023 TMEM132EQ6IEE7 984 aa21.04■□□□□ 0.96
COMMD4-216ENST00000567023 ORAI2Q96SN7 254 aa21.04■□□□□ 0.96
COMMD4-216ENST00000567023 C14orf93Q9H972 538 aaKnown RBP21.04■□□□□ 0.96
COMMD4-216ENST00000567023 ZNF772Q68DY9 489 aaPredicted RBP21.03■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 108.3 ms