RNA–Protein interactions for RNA: ENST00000567003.1

PALB2-205, Transcript of partner and localizer of BRCA2, humanhuman

TSL 3

Gene PALB2, Length 789 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PALB2-205ENST00000567003 NKTRP30414 1462 aaKnown RBP24.17■■□□□ 1.46
PALB2-205ENST00000567003 GCC2Q8IWJ2 1684 aa24.16■■□□□ 1.46
PALB2-205ENST00000567003 FAM50AQ14320 339 aaKnown RBP24.16■■□□□ 1.46
PALB2-205ENST00000567003 POTEAQ6S8J7 498 aa24.16■■□□□ 1.46
PALB2-205ENST00000567003 ZFYVE9O95405 1425 aa24.14■■□□□ 1.45
PALB2-205ENST00000567003 SLC52A1Q9NWF4 448 aa24.14■■□□□ 1.45
PALB2-205ENST00000567003 ANKRD50Q9ULJ7 1429 aa24.13■■□□□ 1.45
PALB2-205ENST00000567003 RIMS2Q9UQ26 1411 aa24.11■■□□□ 1.45
PALB2-205ENST00000567003 PHLPP1O60346 1717 aa24.11■■□□□ 1.45
PALB2-205ENST00000567003 CHD2O14647 1828 aaKnown RBP24.11■■□□□ 1.45
PALB2-205ENST00000567003 MSH6P52701 1360 aa24.11■■□□□ 1.45
PALB2-205ENST00000567003 RPRD2Q5VT52 1461 aaKnown RBP24.11■■□□□ 1.45
PALB2-205ENST00000567003 TMEM131LA2VDJ0 1609 aa24.1■■□□□ 1.45
PALB2-205ENST00000567003 PLEKHG1Q9ULL1 1385 aa24.09■■□□□ 1.45
PALB2-205ENST00000567003 PPP1R15AO75807 674 aaPredicted RBP24.08■■□□□ 1.45
PALB2-205ENST00000567003 SETD1AO15047 1707 aaKnown RBP24.07■■□□□ 1.44
PALB2-205ENST00000567003 NUTM2DQ5VT03 806 aaPredicted RBP24.06■■□□□ 1.44
PALB2-205ENST00000567003 SLAIN2Q9P270 581 aa24.06■■□□□ 1.44
PALB2-205ENST00000567003 UNC13BO14795 1591 aa24.05■■□□□ 1.44
PALB2-205ENST00000567003 CHGAP10645 457 aaKnown RBP24.05■■□□□ 1.44
PALB2-205ENST00000567003 E9PCH4 1651 aa24.04■■□□□ 1.44
PALB2-205ENST00000567003 COL16A1Q07092 1604 aaPredicted RBP24.02■■□□□ 1.44
PALB2-205ENST00000567003 JCADQ9P266 1359 aa24.01■■□□□ 1.43
PALB2-205ENST00000567003 ADAMTS13Q76LX8 1427 aa24■■□□□ 1.43
PALB2-205ENST00000567003 C14orf37Q86TY3 774 aa23.98■■□□□ 1.43
PALB2-205ENST00000567003 TBX22Q9Y458 520 aa23.98■■□□□ 1.43
PALB2-205ENST00000567003 LRP6O75581 1613 aa23.97■■□□□ 1.43
PALB2-205ENST00000567003 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.97■■□□□ 1.43
PALB2-205ENST00000567003 HDGFP51858 240 aaKnown RBP23.96■■□□□ 1.43
PALB2-205ENST00000567003 IQGAP3Q86VI3 1631 aa23.95■■□□□ 1.43
PALB2-205ENST00000567003 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.94■■□□□ 1.42
PALB2-205ENST00000567003 DIP2AQ14689 1571 aa23.94■■□□□ 1.42
PALB2-205ENST00000567003 PTPRUQ92729 1446 aa23.91■■□□□ 1.42
PALB2-205ENST00000567003 NCOA3Q9Y6Q9 1424 aa23.91■■□□□ 1.42
PALB2-205ENST00000567003 AHDC1Q5TGY3 1603 aaPredicted RBP23.9■■□□□ 1.42
PALB2-205ENST00000567003 TRPM2O94759 1503 aa23.89■■□□□ 1.41
PALB2-205ENST00000567003 ATF3P18847 181 aa23.88■■□□□ 1.41
PALB2-205ENST00000567003 NUP155O75694 1391 aa23.88■■□□□ 1.41
PALB2-205ENST00000567003 ROCK1Q13464 1354 aa23.88■■□□□ 1.41
PALB2-205ENST00000567003 SHPRHQ149N8 1683 aa23.87■■□□□ 1.41
PALB2-205ENST00000567003 ITGAEP38570 1179 aa23.87■■□□□ 1.41
PALB2-205ENST00000567003 MEX3CQ5U5Q3 659 aaKnown RBP23.87■■□□□ 1.41
PALB2-205ENST00000567003 CADPS2Q86UW7 1296 aa23.87■■□□□ 1.41
PALB2-205ENST00000567003 PIK3R4Q99570 1358 aa23.87■■□□□ 1.41
PALB2-205ENST00000567003 NRXN3Q9Y4C0 1643 aa23.86■■□□□ 1.41
PALB2-205ENST00000567003 C19orf44Q9H6X5 657 aa23.86■■□□□ 1.41
PALB2-205ENST00000567003 AMOTL2Q9Y2J4 779 aa23.86■■□□□ 1.41
PALB2-205ENST00000567003 SPATA31A6Q5VVP1 1343 aa23.84■■□□□ 1.41
PALB2-205ENST00000567003 XRN1Q8IZH2 1706 aaKnown RBP23.83■■□□□ 1.41
PALB2-205ENST00000567003 BRINP3Q76B58 766 aa23.82■■□□□ 1.4
PALB2-205ENST00000567003 TRIM52Q96A61 297 aa23.82■■□□□ 1.4
PALB2-205ENST00000567003 SPHKAPQ2M3C7 1700 aa23.81■■□□□ 1.4
PALB2-205ENST00000567003 NUTM2BA6NNL0 878 aaPredicted RBP23.79■■□□□ 1.4
PALB2-205ENST00000567003 NUTM2EB1AL46 878 aaPredicted RBP23.79■■□□□ 1.4
PALB2-205ENST00000567003 PPARGC1BQ86YN6 1023 aaKnown RBP23.79■■□□□ 1.4
PALB2-205ENST00000567003 NUTM2AQ8IVF1 878 aaPredicted RBP23.79■■□□□ 1.4
PALB2-205ENST00000567003 ASXL1Q8IXJ9 1541 aa23.79■■□□□ 1.4
PALB2-205ENST00000567003 SETBP1Q9Y6X0 1596 aa23.78■■□□□ 1.4
PALB2-205ENST00000567003 ZNF772Q68DY9 489 aaPredicted RBP23.77■■□□□ 1.4
PALB2-205ENST00000567003 METP08581 1390 aa23.76■■□□□ 1.39
PALB2-205ENST00000567003 MST1RQ04912 1400 aa23.76■■□□□ 1.39
PALB2-205ENST00000567003 ZNF326Q5BKZ1 582 aaKnown RBP23.75■■□□□ 1.39
PALB2-205ENST00000567003 DCCP43146 1447 aa23.75■■□□□ 1.39
PALB2-205ENST00000567003 NHSL1Q5SYE7 1610 aa23.74■■□□□ 1.39
PALB2-205ENST00000567003 UPF1Q92900 1129 aaKnown RBP eCLIP23.73■■□□□ 1.39
PALB2-205ENST00000567003 CLTCL1P53675 1640 aa23.73■■□□□ 1.39
PALB2-205ENST00000567003 DDX17Q92841 729 aaKnown RBP23.72■■□□□ 1.39
PALB2-205ENST00000567003 NALCNQ8IZF0 1738 aa23.71■■□□□ 1.39
PALB2-205ENST00000567003 NEXMIFQ5QGS0 1516 aa23.7■■□□□ 1.38
PALB2-205ENST00000567003 AFF2P51816 1311 aa23.7■■□□□ 1.38
PALB2-205ENST00000567003 SETD5Q9C0A6 1442 aa23.69■■□□□ 1.38
PALB2-205ENST00000567003 RXRBP28702 533 aa23.69■■□□□ 1.38
PALB2-205ENST00000567003 ADGRL3Q9HAR2 1447 aa23.68■■□□□ 1.38
PALB2-205ENST00000567003 PNPLA6Q8IY17 1366 aa23.64■■□□□ 1.37
PALB2-205ENST00000567003 C8orf37Q96NL8 207 aa23.63■■□□□ 1.37
PALB2-205ENST00000567003 KIF1BO60333 1816 aa23.63■■□□□ 1.37
PALB2-205ENST00000567003 CDK12Q9NYV4 1490 aaPredicted RBP23.62■■□□□ 1.37
PALB2-205ENST00000567003 LRRC59Q96AG4 307 aaKnown RBP23.61■■□□□ 1.37
PALB2-205ENST00000567003 RGS12O14924 1447 aa23.59■■□□□ 1.37
PALB2-205ENST00000567003 C1orf167Q5SNV9 1468 aa23.59■■□□□ 1.37
PALB2-205ENST00000567003 ROBO2Q9HCK4 1378 aa23.56■■□□□ 1.36
PALB2-205ENST00000567003 ADAMTS2O95450 1211 aa23.56■■□□□ 1.36
PALB2-205ENST00000567003 QTRT2Q9H974 415 aaKnown RBP23.56■■□□□ 1.36
PALB2-205ENST00000567003 NAIPQ13075 1403 aa23.55■■□□□ 1.36
PALB2-205ENST00000567003 PTCH1Q13635 1447 aa23.54■■□□□ 1.36
PALB2-205ENST00000567003 ORAI2Q96SN7 254 aa23.54■■□□□ 1.36
PALB2-205ENST00000567003 LAMC1P11047 1609 aa23.52■■□□□ 1.36
PALB2-205ENST00000567003 RBM6P78332 1123 aaKnown RBP23.52■■□□□ 1.36
PALB2-205ENST00000567003 NGLY1Q96IV0 654 aa23.5■■□□□ 1.35
PALB2-205ENST00000567003 RRBP1Q9P2E9 1410 aaKnown RBP23.5■■□□□ 1.35
PALB2-205ENST00000567003 PPLO60437 1756 aa23.48■■□□□ 1.35
PALB2-205ENST00000567003 SOS2Q07890 1332 aaPredicted RBP23.47■■□□□ 1.35
PALB2-205ENST00000567003 VGFO15240 615 aaPredicted RBP23.46■■□□□ 1.35
PALB2-205ENST00000567003 SRCAPQ6ZRS2 3230 aa23.46■■□□□ 1.35
PALB2-205ENST00000567003 PRAG1Q86YV5 1406 aa23.44■■□□□ 1.34
PALB2-205ENST00000567003 USP21Q9UK80 565 aa23.43■■□□□ 1.34
PALB2-205ENST00000567003 COL22A1Q8NFW1 1626 aaPredicted RBP23.42■■□□□ 1.34
PALB2-205ENST00000567003 HFM1A2PYH4 1435 aa23.42■■□□□ 1.34
PALB2-205ENST00000567003 FOXD1Q16676 465 aa23.41■■□□□ 1.34
PALB2-205ENST00000567003 SLC4A1APQ9BWU0 796 aaKnown RBP23.41■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms