RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 NPHP4O75161 1426 aaPredicted RBP28.81■■■□□ 2.2
CLN3-225ENST00000566824 IQGAP1P46940 1657 aa28.81■■■□□ 2.2
CLN3-225ENST00000566824 DMRT2Q9Y5R5 561 aa28.8■■■□□ 2.2
CLN3-225ENST00000566824 SENP3Q9H4L4 574 aaPredicted RBP28.79■■■□□ 2.2
CLN3-225ENST00000566824 EID1Q9Y6B2 187 aa28.78■■■□□ 2.2
CLN3-225ENST00000566824 ZNF326Q5BKZ1 582 aaKnown RBP28.76■■■□□ 2.19
CLN3-225ENST00000566824 SPATA31E1Q6ZUB1 1445 aa28.76■■■□□ 2.19
CLN3-225ENST00000566824 NEXMIFQ5QGS0 1516 aa28.75■■■□□ 2.19
CLN3-225ENST00000566824 DHX57Q6P158 1386 aaKnown RBP28.74■■■□□ 2.19
CLN3-225ENST00000566824 PPLO60437 1756 aa28.71■■■□□ 2.19
CLN3-225ENST00000566824 RGL3Q3MIN7 710 aa28.69■■■□□ 2.18
CLN3-225ENST00000566824 PPP1R15AO75807 674 aaPredicted RBP28.69■■■□□ 2.18
CLN3-225ENST00000566824 PLEKHG1Q9ULL1 1385 aa28.68■■■□□ 2.18
CLN3-225ENST00000566824 ZNF335Q9H4Z2 1342 aaPredicted RBP28.68■■■□□ 2.18
CLN3-225ENST00000566824 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.68■■■□□ 2.18
CLN3-225ENST00000566824 IFT172Q9UG01 1749 aa28.67■■■□□ 2.18
CLN3-225ENST00000566824 SLC26A8Q96RN1 970 aa28.66■■■□□ 2.18
CLN3-225ENST00000566824 NRXN3Q9Y4C0 1643 aa28.65■■■□□ 2.18
CLN3-225ENST00000566824 STRCP1A6NGW2 1772 aa28.64■■■□□ 2.18
CLN3-225ENST00000566824 LTBP4Q8N2S1 1624 aa28.64■■■□□ 2.17
CLN3-225ENST00000566824 HDGFP51858 240 aaKnown RBP28.64■■■□□ 2.17
CLN3-225ENST00000566824 BCANQ96GW7 911 aa28.62■■■□□ 2.17
CLN3-225ENST00000566824 ADAMTS13Q76LX8 1427 aa28.61■■■□□ 2.17
CLN3-225ENST00000566824 RPGRIP1LQ68CZ1 1315 aa28.6■■■□□ 2.17
CLN3-225ENST00000566824 SIN3AQ96ST3 1273 aa28.59■■■□□ 2.17
CLN3-225ENST00000566824 SETBP1Q9Y6X0 1596 aa28.57■■■□□ 2.16
CLN3-225ENST00000566824 ADGRF5Q8IZF2 1346 aa28.57■■■□□ 2.16
CLN3-225ENST00000566824 VGFO15240 615 aaPredicted RBP28.53■■■□□ 2.16
CLN3-225ENST00000566824 SETD1AO15047 1707 aaKnown RBP28.51■■■□□ 2.16
CLN3-225ENST00000566824 TBX22Q9Y458 520 aa28.51■■■□□ 2.15
CLN3-225ENST00000566824 CHD2O14647 1828 aaKnown RBP28.51■■■□□ 2.15
CLN3-225ENST00000566824 DIP2AQ14689 1571 aa28.5■■■□□ 2.15
CLN3-225ENST00000566824 NEUROD1Q13562 356 aa28.48■■■□□ 2.15
CLN3-225ENST00000566824 ALKQ9UM73 1620 aa28.47■■■□□ 2.15
CLN3-225ENST00000566824 METP08581 1390 aa28.46■■■□□ 2.15
CLN3-225ENST00000566824 CERKQ8TCT0 537 aa28.46■■■□□ 2.15
CLN3-225ENST00000566824 PTPRUQ92729 1446 aa28.46■■■□□ 2.15
CLN3-225ENST00000566824 NWD1Q149M9 1564 aa28.46■■■□□ 2.15
CLN3-225ENST00000566824 MYOM2P54296 1465 aa28.46■■■□□ 2.15
CLN3-225ENST00000566824 NRXN1Q9ULB1 1477 aa28.46■■■□□ 2.15
CLN3-225ENST00000566824 DCAF11Q8TEB1 546 aa28.45■■■□□ 2.15
CLN3-225ENST00000566824 KDM2AQ9Y2K7 1162 aa28.45■■■□□ 2.15
CLN3-225ENST00000566824 PIK3C2GO75747 1445 aa28.44■■■□□ 2.14
CLN3-225ENST00000566824 KCNA6P17658 529 aa28.43■■■□□ 2.14
CLN3-225ENST00000566824 CPS1P31327 1500 aa28.43■■■□□ 2.14
CLN3-225ENST00000566824 XIRP1Q702N8 1843 aaKnown RBP28.42■■■□□ 2.14
CLN3-225ENST00000566824 LRRC7Q96NW7 1537 aa28.41■■■□□ 2.14
CLN3-225ENST00000566824 ASXL1Q8IXJ9 1541 aa28.38■■■□□ 2.13
CLN3-225ENST00000566824 XRN1Q8IZH2 1706 aaKnown RBP28.38■■■□□ 2.13
CLN3-225ENST00000566824 L3MBTL2Q969R5 705 aa28.38■■■□□ 2.13
CLN3-225ENST00000566824 RBM33Q96EV2 1170 aaKnown RBP28.38■■■□□ 2.13
CLN3-225ENST00000566824 PIK3R4Q99570 1358 aa28.37■■■□□ 2.13
CLN3-225ENST00000566824 AMOTL2Q9Y2J4 779 aa28.36■■■□□ 2.13
CLN3-225ENST00000566824 CFAP70Q5T0N1 1121 aa28.35■■■□□ 2.13
CLN3-225ENST00000566824 NKTRP30414 1462 aaKnown RBP28.33■■■□□ 2.13
CLN3-225ENST00000566824 TMEM132EQ6IEE7 984 aa28.33■■■□□ 2.13
CLN3-225ENST00000566824 C14orf93Q9H972 538 aaKnown RBP28.32■■■□□ 2.12
CLN3-225ENST00000566824 PROSER2Q86WR7 435 aaPredicted RBP28.31■■■□□ 2.12
CLN3-225ENST00000566824 TMEM94Q12767 1356 aa28.29■■■□□ 2.12
CLN3-225ENST00000566824 LAMC1P11047 1609 aa28.29■■■□□ 2.12
CLN3-225ENST00000566824 IQSEC2Q5JU85 1478 aa28.28■■■□□ 2.12
CLN3-225ENST00000566824 STAC3Q96MF2 364 aa28.26■■■□□ 2.11
CLN3-225ENST00000566824 PRAG1Q86YV5 1406 aa28.26■■■□□ 2.11
CLN3-225ENST00000566824 CCER1Q8TC90 406 aaPredicted RBP28.25■■■□□ 2.11
CLN3-225ENST00000566824 ADGRB1O14514 1584 aa28.25■■■□□ 2.11
CLN3-225ENST00000566824 STK26Q9P289 416 aa28.24■■■□□ 2.11
CLN3-225ENST00000566824 ROBO2Q9HCK4 1378 aa28.23■■■□□ 2.11
CLN3-225ENST00000566824 YTHDC2Q9H6S0 1430 aaKnown RBP28.21■■■□□ 2.11
CLN3-225ENST00000566824 LRPPRCP42704 1394 aaKnown RBP28.21■■■□□ 2.11
CLN3-225ENST00000566824 TONSLQ96HA7 1378 aa28.21■■■□□ 2.11
CLN3-225ENST00000566824 KNDC1Q76NI1 1749 aa28.2■■■□□ 2.1
CLN3-225ENST00000566824 KIAA1210Q9ULL0 1709 aa28.19■■■□□ 2.1
CLN3-225ENST00000566824 PTCH1Q13635 1447 aa28.18■■■□□ 2.1
CLN3-225ENST00000566824 CLSPNQ9HAW4 1339 aa28.18■■■□□ 2.1
CLN3-225ENST00000566824 NBPF1Q3BBV0 1214 aa28.18■■■□□ 2.1
CLN3-225ENST00000566824 NBPF8Q3BBV2 869 aa28.18■■■□□ 2.1
CLN3-225ENST00000566824 TECPR2O15040 1411 aa28.16■■■□□ 2.1
CLN3-225ENST00000566824 ABCC11Q96J66 1382 aa28.16■■■□□ 2.1
CLN3-225ENST00000566824 NALCNQ8IZF0 1738 aa28.15■■■□□ 2.1
CLN3-225ENST00000566824 TRPM1Q7Z4N2 1603 aa28.15■■■□□ 2.1
CLN3-225ENST00000566824 UBAP1LF5GYI3 381 aa28.15■■■□□ 2.1
CLN3-225ENST00000566824 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.14■■■□□ 2.1
CLN3-225ENST00000566824 PLEKHH1Q9ULM0 1364 aa28.14■■■□□ 2.1
CLN3-225ENST00000566824 WAPLQ7Z5K2 1190 aa28.14■■■□□ 2.09
CLN3-225ENST00000566824 FBXO41Q8TF61 875 aa28.14■■■□□ 2.09
CLN3-225ENST00000566824 NCOA3Q9Y6Q9 1424 aa28.11■■■□□ 2.09
CLN3-225ENST00000566824 C14orf37Q86TY3 774 aa28.1■■■□□ 2.09
CLN3-225ENST00000566824 TRAK1Q9UPV9 953 aa28.1■■■□□ 2.09
CLN3-225ENST00000566824 MSH6P52701 1360 aa28.08■■■□□ 2.09
CLN3-225ENST00000566824 ILDR1Q86SU0 546 aaPredicted RBP28.08■■■□□ 2.09
CLN3-225ENST00000566824 ADGRL3Q9HAR2 1447 aa28.07■■■□□ 2.08
CLN3-225ENST00000566824 ARHGEF28Q8N1W1 1705 aaKnown RBP28.07■■■□□ 2.08
CLN3-225ENST00000566824 DLC1Q96QB1 1528 aa28.06■■■□□ 2.08
CLN3-225ENST00000566824 C19orf44Q9H6X5 657 aa28.05■■■□□ 2.08
CLN3-225ENST00000566824 FAM135BQ49AJ0 1406 aa28.04■■■□□ 2.08
CLN3-225ENST00000566824 TOM1O60784 492 aa28.04■■■□□ 2.08
CLN3-225ENST00000566824 PIP4K2BP78356 416 aa28.04■■■□□ 2.08
CLN3-225ENST00000566824 PRAM1Q96QH2 718 aa28.04■■■□□ 2.08
CLN3-225ENST00000566824 SAFB2Q14151 953 aaKnown RBP eCLIP28.02■■■□□ 2.08
CLN3-225ENST00000566824 SIRT1Q96EB6 747 aa28.02■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms