RNA–Protein interactions for RNA: ENST00000566703.1

RNF40-209, Transcript of ring finger protein 40, humanhuman

TSL 3

Gene RNF40, Length 808 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-209ENST00000566703 FAM135BQ49AJ0 1406 aa22.93■■□□□ 1.26
RNF40-209ENST00000566703 PLEKHG1Q9ULL1 1385 aa22.93■■□□□ 1.26
RNF40-209ENST00000566703 TBX22Q9Y458 520 aa22.92■■□□□ 1.26
RNF40-209ENST00000566703 RIMS2Q9UQ26 1411 aa22.91■■□□□ 1.26
RNF40-209ENST00000566703 NUP155O75694 1391 aa22.91■■□□□ 1.26
RNF40-209ENST00000566703 PPP1R15AO75807 674 aaPredicted RBP22.91■■□□□ 1.26
RNF40-209ENST00000566703 GCC2Q8IWJ2 1684 aa22.9■■□□□ 1.26
RNF40-209ENST00000566703 CHGAP10645 457 aaKnown RBP22.89■■□□□ 1.25
RNF40-209ENST00000566703 ITGAEP38570 1179 aa22.89■■□□□ 1.25
RNF40-209ENST00000566703 NKTRP30414 1462 aaKnown RBP22.89■■□□□ 1.25
RNF40-209ENST00000566703 XIRP1Q702N8 1843 aaKnown RBP22.88■■□□□ 1.25
RNF40-209ENST00000566703 TMEM131LA2VDJ0 1609 aa22.88■■□□□ 1.25
RNF40-209ENST00000566703 PHF23Q9BUL5 403 aaPredicted RBP22.87■■□□□ 1.25
RNF40-209ENST00000566703 SENP3Q9H4L4 574 aaPredicted RBP22.86■■□□□ 1.25
RNF40-209ENST00000566703 IQGAP3Q86VI3 1631 aa22.86■■□□□ 1.25
RNF40-209ENST00000566703 NWD1Q149M9 1564 aa22.85■■□□□ 1.25
RNF40-209ENST00000566703 PPARGC1BQ86YN6 1023 aaKnown RBP22.85■■□□□ 1.25
RNF40-209ENST00000566703 RBM33Q96EV2 1170 aaKnown RBP22.83■■□□□ 1.25
RNF40-209ENST00000566703 MSH6P52701 1360 aa22.83■■□□□ 1.25
RNF40-209ENST00000566703 E9PCH4 1651 aa22.83■■□□□ 1.24
RNF40-209ENST00000566703 NCOA3Q9Y6Q9 1424 aa22.82■■□□□ 1.24
RNF40-209ENST00000566703 PIK3R4Q99570 1358 aa22.81■■□□□ 1.24
RNF40-209ENST00000566703 SLAIN2Q9P270 581 aa22.8■■□□□ 1.24
RNF40-209ENST00000566703 MYO5BQ9ULV0 1848 aa22.78■■□□□ 1.24
RNF40-209ENST00000566703 ADAMTS13Q76LX8 1427 aa22.78■■□□□ 1.24
RNF40-209ENST00000566703 NUTM2DQ5VT03 806 aaPredicted RBP22.77■■□□□ 1.24
RNF40-209ENST00000566703 CHD2O14647 1828 aaKnown RBP22.77■■□□□ 1.24
RNF40-209ENST00000566703 RRBP1Q9P2E9 1410 aaKnown RBP22.76■■□□□ 1.23
RNF40-209ENST00000566703 DIP2AQ14689 1571 aa22.74■■□□□ 1.23
RNF40-209ENST00000566703 C19orf44Q9H6X5 657 aa22.73■■□□□ 1.23
RNF40-209ENST00000566703 CADPS2Q86UW7 1296 aa22.72■■□□□ 1.23
RNF40-209ENST00000566703 AMOTL2Q9Y2J4 779 aa22.71■■□□□ 1.23
RNF40-209ENST00000566703 ROBO1Q9Y6N7 1651 aa22.71■■□□□ 1.23
RNF40-209ENST00000566703 C14orf37Q86TY3 774 aa22.7■■□□□ 1.22
RNF40-209ENST00000566703 RGS17Q9UGC6 210 aaPredicted RBP22.7■■□□□ 1.22
RNF40-209ENST00000566703 NAIPQ13075 1403 aa22.68■■□□□ 1.22
RNF40-209ENST00000566703 ZNF326Q5BKZ1 582 aaKnown RBP22.68■■□□□ 1.22
RNF40-209ENST00000566703 ATF3P18847 181 aa22.67■■□□□ 1.22
RNF40-209ENST00000566703 TRPM2O94759 1503 aa22.67■■□□□ 1.22
RNF40-209ENST00000566703 JCADQ9P266 1359 aa22.64■■□□□ 1.22
RNF40-209ENST00000566703 PTPRUQ92729 1446 aa22.64■■□□□ 1.21
RNF40-209ENST00000566703 SPHKAPQ2M3C7 1700 aa22.63■■□□□ 1.21
RNF40-209ENST00000566703 SETBP1Q9Y6X0 1596 aa22.62■■□□□ 1.21
RNF40-209ENST00000566703 TRIM52Q96A61 297 aa22.61■■□□□ 1.21
RNF40-209ENST00000566703 HFM1A2PYH4 1435 aa22.59■■□□□ 1.21
RNF40-209ENST00000566703 VGFO15240 615 aaPredicted RBP22.58■■□□□ 1.21
RNF40-209ENST00000566703 DCCP43146 1447 aa22.57■■□□□ 1.2
RNF40-209ENST00000566703 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.57■■□□□ 1.2
RNF40-209ENST00000566703 METP08581 1390 aa22.57■■□□□ 1.2
RNF40-209ENST00000566703 PHLPP1O60346 1717 aa22.57■■□□□ 1.2
RNF40-209ENST00000566703 POTEAQ6S8J7 498 aa22.56■■□□□ 1.2
RNF40-209ENST00000566703 SLC4A1APQ9BWU0 796 aaKnown RBP22.56■■□□□ 1.2
RNF40-209ENST00000566703 NRXN3Q9Y4C0 1643 aa22.56■■□□□ 1.2
RNF40-209ENST00000566703 SPATA31A6Q5VVP1 1343 aa22.56■■□□□ 1.2
RNF40-209ENST00000566703 RPGRIP1LQ68CZ1 1315 aa22.56■■□□□ 1.2
RNF40-209ENST00000566703 CLTCL1P53675 1640 aa22.54■■□□□ 1.2
RNF40-209ENST00000566703 NEXMIFQ5QGS0 1516 aa22.54■■□□□ 1.2
RNF40-209ENST00000566703 BRINP3Q76B58 766 aa22.54■■□□□ 1.2
RNF40-209ENST00000566703 XRN1Q8IZH2 1706 aaKnown RBP22.52■■□□□ 1.2
RNF40-209ENST00000566703 COL16A1Q07092 1604 aaPredicted RBP22.52■■□□□ 1.2
RNF40-209ENST00000566703 AHDC1Q5TGY3 1603 aaPredicted RBP22.51■■□□□ 1.19
RNF40-209ENST00000566703 KIF1BO60333 1816 aa22.47■■□□□ 1.19
RNF40-209ENST00000566703 MST1RQ04912 1400 aa22.47■■□□□ 1.19
RNF40-209ENST00000566703 ADGRL3Q9HAR2 1447 aa22.46■■□□□ 1.19
RNF40-209ENST00000566703 MEX3CQ5U5Q3 659 aaKnown RBP22.44■■□□□ 1.18
RNF40-209ENST00000566703 ZNF772Q68DY9 489 aaPredicted RBP22.44■■□□□ 1.18
RNF40-209ENST00000566703 LRRC59Q96AG4 307 aaKnown RBP22.44■■□□□ 1.18
RNF40-209ENST00000566703 ACIN1Q9UKV3 1341 aaKnown RBP22.44■■□□□ 1.18
RNF40-209ENST00000566703 SETD5Q9C0A6 1442 aa22.43■■□□□ 1.18
RNF40-209ENST00000566703 ASXL1Q8IXJ9 1541 aa22.41■■□□□ 1.18
RNF40-209ENST00000566703 PTCH1Q13635 1447 aa22.41■■□□□ 1.18
RNF40-209ENST00000566703 PRAG1Q86YV5 1406 aa22.41■■□□□ 1.18
RNF40-209ENST00000566703 LRP6O75581 1613 aa22.4■■□□□ 1.18
RNF40-209ENST00000566703 MPHOSPH9Q99550 1183 aa22.4■■□□□ 1.18
RNF40-209ENST00000566703 SHPRHQ149N8 1683 aa22.39■■□□□ 1.18
RNF40-209ENST00000566703 ROBO2Q9HCK4 1378 aa22.38■■□□□ 1.17
RNF40-209ENST00000566703 FOXD1Q16676 465 aa22.38■■□□□ 1.17
RNF40-209ENST00000566703 CCDC144AA2RUR9 1427 aa22.37■■□□□ 1.17
RNF40-209ENST00000566703 NUTM2BA6NNL0 878 aaPredicted RBP22.36■■□□□ 1.17
RNF40-209ENST00000566703 NUTM2EB1AL46 878 aaPredicted RBP22.36■■□□□ 1.17
RNF40-209ENST00000566703 NUTM2AQ8IVF1 878 aaPredicted RBP22.36■■□□□ 1.17
RNF40-209ENST00000566703 C1orf167Q5SNV9 1468 aa22.35■■□□□ 1.17
RNF40-209ENST00000566703 ANKRD30BQ9BXX2 1392 aa22.34■■□□□ 1.17
RNF40-209ENST00000566703 RGL3Q3MIN7 710 aa22.33■■□□□ 1.17
RNF40-209ENST00000566703 SETD1AO15047 1707 aaKnown RBP22.33■■□□□ 1.17
RNF40-209ENST00000566703 ADGRF5Q8IZF2 1346 aa22.32■■□□□ 1.16
RNF40-209ENST00000566703 NHSL1Q5SYE7 1610 aa22.32■■□□□ 1.16
RNF40-209ENST00000566703 DDX17Q92841 729 aaKnown RBP22.32■■□□□ 1.16
RNF40-209ENST00000566703 SPATA31E1Q6ZUB1 1445 aa22.31■■□□□ 1.16
RNF40-209ENST00000566703 NALCNQ8IZF0 1738 aa22.31■■□□□ 1.16
RNF40-209ENST00000566703 PPLO60437 1756 aa22.31■■□□□ 1.16
RNF40-209ENST00000566703 RXRBP28702 533 aa22.31■■□□□ 1.16
RNF40-209ENST00000566703 SOS2Q07890 1332 aaPredicted RBP22.31■■□□□ 1.16
RNF40-209ENST00000566703 PNPLA6Q8IY17 1366 aa22.3■■□□□ 1.16
RNF40-209ENST00000566703 ORAI2Q96SN7 254 aa22.3■■□□□ 1.16
RNF40-209ENST00000566703 AFF2P51816 1311 aa22.27■■□□□ 1.16
RNF40-209ENST00000566703 ABCC11Q96J66 1382 aa22.26■■□□□ 1.15
RNF40-209ENST00000566703 LRPPRCP42704 1394 aaKnown RBP22.25■■□□□ 1.15
RNF40-209ENST00000566703 LAMC1P11047 1609 aa22.24■■□□□ 1.15
RNF40-209ENST00000566703 TECPR2O15040 1411 aa22.24■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms