RNA–Protein interactions for RNA: ENST00000566669.1

UBFD1-206, Transcript of ubiquitin family domain containing 1, humanhuman

TSL 2

Gene UBFD1, Length 577 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1-206ENST00000566669 NKTRP30414 1462 aaKnown RBP42.23■■■■■ 4.35
UBFD1-206ENST00000566669 NUP155O75694 1391 aa42.22■■■■■ 4.35
UBFD1-206ENST00000566669 PPP1R15AO75807 674 aaPredicted RBP42.21■■■■■ 4.35
UBFD1-206ENST00000566669 RIMS2Q9UQ26 1411 aa42.2■■■■■ 4.35
UBFD1-206ENST00000566669 TMEM94Q12767 1356 aa42.2■■■■■ 4.35
UBFD1-206ENST00000566669 TMEM131LA2VDJ0 1609 aa42.2■■■■■ 4.35
UBFD1-206ENST00000566669 MED1Q15648 1581 aaPredicted RBP42.19■■■■■ 4.34
UBFD1-206ENST00000566669 ITGAEP38570 1179 aa42.18■■■■■ 4.34
UBFD1-206ENST00000566669 PROSER2Q86WR7 435 aaPredicted RBP42.18■■■■■ 4.34
UBFD1-206ENST00000566669 E9PCH4 1651 aa42.16■■■■■ 4.34
UBFD1-206ENST00000566669 NWD1Q149M9 1564 aa42.16■■■■■ 4.34
UBFD1-206ENST00000566669 XIRP1Q702N8 1843 aaKnown RBP42.15■■■■■ 4.34
UBFD1-206ENST00000566669 FAM135BQ49AJ0 1406 aa42.14■■■■■ 4.34
UBFD1-206ENST00000566669 CHGAP10645 457 aaKnown RBP42.11■■■■■ 4.33
UBFD1-206ENST00000566669 TBX22Q9Y458 520 aa42.11■■■■■ 4.33
UBFD1-206ENST00000566669 PPARGC1BQ86YN6 1023 aaKnown RBP42.06■■■■■ 4.32
UBFD1-206ENST00000566669 RRBP1Q9P2E9 1410 aaKnown RBP42.05■■■■■ 4.32
UBFD1-206ENST00000566669 MYO5BQ9ULV0 1848 aa42.05■■■■■ 4.32
UBFD1-206ENST00000566669 MSH6P52701 1360 aa42.04■■■■■ 4.32
UBFD1-206ENST00000566669 PHF23Q9BUL5 403 aaPredicted RBP42.03■■■■■ 4.32
UBFD1-206ENST00000566669 NCOA3Q9Y6Q9 1424 aa42.02■■■■■ 4.32
UBFD1-206ENST00000566669 PIK3R4Q99570 1358 aa42.01■■■■■ 4.32
UBFD1-206ENST00000566669 DIP2AQ14689 1571 aa42.01■■■■■ 4.32
UBFD1-206ENST00000566669 CHD2O14647 1828 aaKnown RBP41.97■■■■■ 4.31
UBFD1-206ENST00000566669 SENP3Q9H4L4 574 aaPredicted RBP41.95■■■■■ 4.31
UBFD1-206ENST00000566669 ADAMTS13Q76LX8 1427 aa41.92■■■■■ 4.3
UBFD1-206ENST00000566669 RBM33Q96EV2 1170 aaKnown RBP41.89■■■■■ 4.3
UBFD1-206ENST00000566669 SLAIN2Q9P270 581 aa41.88■■■■■ 4.29
UBFD1-206ENST00000566669 SPHKAPQ2M3C7 1700 aa41.86■■■■■ 4.29
UBFD1-206ENST00000566669 TRPM2O94759 1503 aa41.85■■■■■ 4.29
UBFD1-206ENST00000566669 ROBO1Q9Y6N7 1651 aa41.85■■■■■ 4.29
UBFD1-206ENST00000566669 NAIPQ13075 1403 aa41.85■■■■■ 4.29
UBFD1-206ENST00000566669 NUTM2DQ5VT03 806 aaPredicted RBP41.84■■■■■ 4.29
UBFD1-206ENST00000566669 C14orf37Q86TY3 774 aa41.79■■■■■ 4.28
UBFD1-206ENST00000566669 CADPS2Q86UW7 1296 aa41.78■■■■■ 4.28
UBFD1-206ENST00000566669 C19orf44Q9H6X5 657 aa41.78■■■■■ 4.28
UBFD1-206ENST00000566669 ZNF326Q5BKZ1 582 aaKnown RBP41.77■■■■■ 4.28
UBFD1-206ENST00000566669 HFM1A2PYH4 1435 aa41.76■■■■■ 4.28
UBFD1-206ENST00000566669 SETBP1Q9Y6X0 1596 aa41.74■■■■■ 4.27
UBFD1-206ENST00000566669 AMOTL2Q9Y2J4 779 aa41.73■■■■■ 4.27
UBFD1-206ENST00000566669 ATF3P18847 181 aa41.72■■■■■ 4.27
UBFD1-206ENST00000566669 TRIM52Q96A61 297 aa41.65■■■■■ 4.26
UBFD1-206ENST00000566669 DCCP43146 1447 aa41.64■■■■■ 4.26
UBFD1-206ENST00000566669 JCADQ9P266 1359 aa41.63■■■■■ 4.26
UBFD1-206ENST00000566669 CLTCL1P53675 1640 aa41.63■■■■■ 4.26
UBFD1-206ENST00000566669 PTPRUQ92729 1446 aa41.62■■■■■ 4.25
UBFD1-206ENST00000566669 NRXN3Q9Y4C0 1643 aa41.61■■■■■ 4.25
UBFD1-206ENST00000566669 PHLPP1O60346 1717 aa41.61■■■■■ 4.25
UBFD1-206ENST00000566669 SIPA1L2Q9P2F8 1722 aaPredicted RBP41.6■■■■■ 4.25
UBFD1-206ENST00000566669 NEXMIFQ5QGS0 1516 aa41.58■■■■■ 4.25
UBFD1-206ENST00000566669 VGFO15240 615 aaPredicted RBP41.57■■■■■ 4.25
UBFD1-206ENST00000566669 SLC4A1APQ9BWU0 796 aaKnown RBP41.57■■■■■ 4.25
UBFD1-206ENST00000566669 XRN1Q8IZH2 1706 aaKnown RBP41.57■■■■■ 4.25
UBFD1-206ENST00000566669 KIF1BO60333 1816 aa41.57■■■■■ 4.24
UBFD1-206ENST00000566669 RPGRIP1LQ68CZ1 1315 aa41.55■■■■■ 4.24
UBFD1-206ENST00000566669 RGS17Q9UGC6 210 aaPredicted RBP41.55■■■■■ 4.24
UBFD1-206ENST00000566669 METP08581 1390 aa41.52■■■■■ 4.24
UBFD1-206ENST00000566669 AHDC1Q5TGY3 1603 aaPredicted RBP41.5■■■■■ 4.23
UBFD1-206ENST00000566669 COL16A1Q07092 1604 aaPredicted RBP41.49■■■■■ 4.23
UBFD1-206ENST00000566669 SPATA31A6Q5VVP1 1343 aa41.48■■■■■ 4.23
UBFD1-206ENST00000566669 ACIN1Q9UKV3 1341 aaKnown RBP41.48■■■■■ 4.23
UBFD1-206ENST00000566669 BRINP3Q76B58 766 aa41.42■■■■■ 4.22
UBFD1-206ENST00000566669 ADGRL3Q9HAR2 1447 aa41.41■■■■■ 4.22
UBFD1-206ENST00000566669 MST1RQ04912 1400 aa41.36■■■■■ 4.21
UBFD1-206ENST00000566669 PTCH1Q13635 1447 aa41.36■■■■■ 4.21
UBFD1-206ENST00000566669 PRAG1Q86YV5 1406 aa41.34■■■■■ 4.21
UBFD1-206ENST00000566669 POTEAQ6S8J7 498 aa41.33■■■■■ 4.21
UBFD1-206ENST00000566669 ASXL1Q8IXJ9 1541 aa41.33■■■■■ 4.21
UBFD1-206ENST00000566669 CCDC144AA2RUR9 1427 aa41.31■■■■■ 4.2
UBFD1-206ENST00000566669 SHPRHQ149N8 1683 aa41.31■■■■■ 4.2
UBFD1-206ENST00000566669 MEX3CQ5U5Q3 659 aaKnown RBP41.27■■■■■ 4.2
UBFD1-206ENST00000566669 SETD5Q9C0A6 1442 aa41.27■■■■■ 4.2
UBFD1-206ENST00000566669 ZNF772Q68DY9 489 aaPredicted RBP41.24■■■■■ 4.19
UBFD1-206ENST00000566669 LRRC59Q96AG4 307 aaKnown RBP41.24■■■■■ 4.19
UBFD1-206ENST00000566669 MPHOSPH9Q99550 1183 aa41.24■■■■■ 4.19
UBFD1-206ENST00000566669 PPLO60437 1756 aa41.24■■■■■ 4.19
UBFD1-206ENST00000566669 SETD1AO15047 1707 aaKnown RBP41.22■■■■■ 4.19
UBFD1-206ENST00000566669 ANKRD30BQ9BXX2 1392 aa41.21■■■■■ 4.19
UBFD1-206ENST00000566669 NALCNQ8IZF0 1738 aa41.21■■■■■ 4.19
UBFD1-206ENST00000566669 LRP6O75581 1613 aa41.2■■■■■ 4.19
UBFD1-206ENST00000566669 NHSL1Q5SYE7 1610 aa41.19■■■■■ 4.18
UBFD1-206ENST00000566669 ROBO2Q9HCK4 1378 aa41.19■■■■■ 4.18
UBFD1-206ENST00000566669 FOXD1Q16676 465 aa41.18■■■■■ 4.18
UBFD1-206ENST00000566669 C1orf167Q5SNV9 1468 aa41.15■■■■■ 4.18
UBFD1-206ENST00000566669 SPATA31E1Q6ZUB1 1445 aa41.15■■■■■ 4.18
UBFD1-206ENST00000566669 RGL3Q3MIN7 710 aa41.08■■■■■ 4.17
UBFD1-206ENST00000566669 ADGRF5Q8IZF2 1346 aa41.07■■■■■ 4.17
UBFD1-206ENST00000566669 NUTM2BA6NNL0 878 aaPredicted RBP41.04■■■■■ 4.16
UBFD1-206ENST00000566669 NUTM2EB1AL46 878 aaPredicted RBP41.04■■■■■ 4.16
UBFD1-206ENST00000566669 NUTM2AQ8IVF1 878 aaPredicted RBP41.04■■■■■ 4.16
UBFD1-206ENST00000566669 LAMC1P11047 1609 aa41.04■■■■■ 4.16
UBFD1-206ENST00000566669 TECPR2O15040 1411 aa41.02■■■■■ 4.16
UBFD1-206ENST00000566669 PNPLA6Q8IY17 1366 aa41.01■■■■■ 4.16
UBFD1-206ENST00000566669 LRPPRCP42704 1394 aaKnown RBP40.99■■■■■ 4.15
UBFD1-206ENST00000566669 CDC42BPGQ6DT37 1551 aa40.99■■■■■ 4.15
UBFD1-206ENST00000566669 ABCC11Q96J66 1382 aa40.99■■■■■ 4.15
UBFD1-206ENST00000566669 SOS2Q07890 1332 aaPredicted RBP40.98■■■■■ 4.15
UBFD1-206ENST00000566669 PIK3C2GO75747 1445 aa40.98■■■■■ 4.15
UBFD1-206ENST00000566669 IFT172Q9UG01 1749 aa40.98■■■■■ 4.15
UBFD1-206ENST00000566669 DDX17Q92841 729 aaKnown RBP40.95■■■■■ 4.15
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms