RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 PLEKHG1Q9ULL1 1385 aa22.68■■□□□ 1.22
CLN3-222ENST00000566083 IQGAP3Q86VI3 1631 aa22.68■■□□□ 1.22
CLN3-222ENST00000566083 ZFYVE9O95405 1425 aa22.67■■□□□ 1.22
CLN3-222ENST00000566083 PROSER2Q86WR7 435 aaPredicted RBP22.66■■□□□ 1.22
CLN3-222ENST00000566083 RIMS2Q9UQ26 1411 aa22.66■■□□□ 1.22
CLN3-222ENST00000566083 TMEM94Q12767 1356 aa22.66■■□□□ 1.22
CLN3-222ENST00000566083 CHGAP10645 457 aaKnown RBP22.65■■□□□ 1.22
CLN3-222ENST00000566083 PPARGC1BQ86YN6 1023 aaKnown RBP22.65■■□□□ 1.22
CLN3-222ENST00000566083 NKTRP30414 1462 aaKnown RBP22.65■■□□□ 1.22
CLN3-222ENST00000566083 TMEM131LA2VDJ0 1609 aa22.64■■□□□ 1.21
CLN3-222ENST00000566083 E9PCH4 1651 aa22.64■■□□□ 1.21
CLN3-222ENST00000566083 TBX22Q9Y458 520 aa22.63■■□□□ 1.21
CLN3-222ENST00000566083 FAM135BQ49AJ0 1406 aa22.62■■□□□ 1.21
CLN3-222ENST00000566083 RRBP1Q9P2E9 1410 aaKnown RBP22.62■■□□□ 1.21
CLN3-222ENST00000566083 NWD1Q149M9 1564 aa22.6■■□□□ 1.21
CLN3-222ENST00000566083 XIRP1Q702N8 1843 aaKnown RBP22.6■■□□□ 1.21
CLN3-222ENST00000566083 MED1Q15648 1581 aaPredicted RBP22.58■■□□□ 1.21
CLN3-222ENST00000566083 MYO5BQ9ULV0 1848 aa22.58■■□□□ 1.2
CLN3-222ENST00000566083 MSH6P52701 1360 aa22.58■■□□□ 1.2
CLN3-222ENST00000566083 PIK3R4Q99570 1358 aa22.57■■□□□ 1.2
CLN3-222ENST00000566083 PHF23Q9BUL5 403 aaPredicted RBP22.57■■□□□ 1.2
CLN3-222ENST00000566083 NCOA3Q9Y6Q9 1424 aa22.56■■□□□ 1.2
CLN3-222ENST00000566083 DIP2AQ14689 1571 aa22.53■■□□□ 1.2
CLN3-222ENST00000566083 CHD2O14647 1828 aaKnown RBP22.53■■□□□ 1.2
CLN3-222ENST00000566083 SENP3Q9H4L4 574 aaPredicted RBP22.52■■□□□ 1.2
CLN3-222ENST00000566083 ADAMTS13Q76LX8 1427 aa22.5■■□□□ 1.19
CLN3-222ENST00000566083 NAIPQ13075 1403 aa22.5■■□□□ 1.19
CLN3-222ENST00000566083 NUTM2DQ5VT03 806 aaPredicted RBP22.49■■□□□ 1.19
CLN3-222ENST00000566083 RBM33Q96EV2 1170 aaKnown RBP22.49■■□□□ 1.19
CLN3-222ENST00000566083 SLAIN2Q9P270 581 aa22.49■■□□□ 1.19
CLN3-222ENST00000566083 SPHKAPQ2M3C7 1700 aa22.48■■□□□ 1.19
CLN3-222ENST00000566083 ZNF326Q5BKZ1 582 aaKnown RBP22.48■■□□□ 1.19
CLN3-222ENST00000566083 C14orf37Q86TY3 774 aa22.48■■□□□ 1.19
CLN3-222ENST00000566083 C19orf44Q9H6X5 657 aa22.46■■□□□ 1.19
CLN3-222ENST00000566083 TRPM2O94759 1503 aa22.46■■□□□ 1.19
CLN3-222ENST00000566083 HFM1A2PYH4 1435 aa22.46■■□□□ 1.19
CLN3-222ENST00000566083 CADPS2Q86UW7 1296 aa22.45■■□□□ 1.18
CLN3-222ENST00000566083 ROBO1Q9Y6N7 1651 aa22.43■■□□□ 1.18
CLN3-222ENST00000566083 TRIM52Q96A61 297 aa22.43■■□□□ 1.18
CLN3-222ENST00000566083 AMOTL2Q9Y2J4 779 aa22.43■■□□□ 1.18
CLN3-222ENST00000566083 ATF3P18847 181 aa22.42■■□□□ 1.18
CLN3-222ENST00000566083 SETBP1Q9Y6X0 1596 aa22.4■■□□□ 1.18
CLN3-222ENST00000566083 SLC4A1APQ9BWU0 796 aaKnown RBP22.39■■□□□ 1.17
CLN3-222ENST00000566083 VGFO15240 615 aaPredicted RBP22.37■■□□□ 1.17
CLN3-222ENST00000566083 RPGRIP1LQ68CZ1 1315 aa22.36■■□□□ 1.17
CLN3-222ENST00000566083 ACIN1Q9UKV3 1341 aaKnown RBP22.36■■□□□ 1.17
CLN3-222ENST00000566083 DCCP43146 1447 aa22.35■■□□□ 1.17
CLN3-222ENST00000566083 KIF1BO60333 1816 aa22.35■■□□□ 1.17
CLN3-222ENST00000566083 CLTCL1P53675 1640 aa22.35■■□□□ 1.17
CLN3-222ENST00000566083 PTPRUQ92729 1446 aa22.34■■□□□ 1.17
CLN3-222ENST00000566083 JCADQ9P266 1359 aa22.34■■□□□ 1.17
CLN3-222ENST00000566083 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.32■■□□□ 1.16
CLN3-222ENST00000566083 NRXN3Q9Y4C0 1643 aa22.32■■□□□ 1.16
CLN3-222ENST00000566083 NEXMIFQ5QGS0 1516 aa22.31■■□□□ 1.16
CLN3-222ENST00000566083 PHLPP1O60346 1717 aa22.31■■□□□ 1.16
CLN3-222ENST00000566083 XRN1Q8IZH2 1706 aaKnown RBP22.29■■□□□ 1.16
CLN3-222ENST00000566083 METP08581 1390 aa22.29■■□□□ 1.16
CLN3-222ENST00000566083 RGS17Q9UGC6 210 aaPredicted RBP22.28■■□□□ 1.16
CLN3-222ENST00000566083 SPATA31A6Q5VVP1 1343 aa22.27■■□□□ 1.16
CLN3-222ENST00000566083 AHDC1Q5TGY3 1603 aaPredicted RBP22.25■■□□□ 1.15
CLN3-222ENST00000566083 BRINP3Q76B58 766 aa22.24■■□□□ 1.15
CLN3-222ENST00000566083 COL16A1Q07092 1604 aaPredicted RBP22.23■■□□□ 1.15
CLN3-222ENST00000566083 ADGRL3Q9HAR2 1447 aa22.23■■□□□ 1.15
CLN3-222ENST00000566083 CCDC144AA2RUR9 1427 aa22.22■■□□□ 1.15
CLN3-222ENST00000566083 PTCH1Q13635 1447 aa22.2■■□□□ 1.14
CLN3-222ENST00000566083 MPHOSPH9Q99550 1183 aa22.2■■□□□ 1.14
CLN3-222ENST00000566083 MST1RQ04912 1400 aa22.19■■□□□ 1.14
CLN3-222ENST00000566083 PRAG1Q86YV5 1406 aa22.18■■□□□ 1.14
CLN3-222ENST00000566083 MEX3CQ5U5Q3 659 aaKnown RBP22.17■■□□□ 1.14
CLN3-222ENST00000566083 POTEAQ6S8J7 498 aa22.17■■□□□ 1.14
CLN3-222ENST00000566083 ASXL1Q8IXJ9 1541 aa22.17■■□□□ 1.14
CLN3-222ENST00000566083 LRRC59Q96AG4 307 aaKnown RBP22.16■■□□□ 1.14
CLN3-222ENST00000566083 ANKRD30BQ9BXX2 1392 aa22.16■■□□□ 1.14
CLN3-222ENST00000566083 FOXD1Q16676 465 aa22.15■■□□□ 1.14
CLN3-222ENST00000566083 ZNF772Q68DY9 489 aaPredicted RBP22.15■■□□□ 1.14
CLN3-222ENST00000566083 SETD5Q9C0A6 1442 aa22.14■■□□□ 1.14
CLN3-222ENST00000566083 PPLO60437 1756 aa22.14■■□□□ 1.13
CLN3-222ENST00000566083 SHPRHQ149N8 1683 aa22.13■■□□□ 1.13
CLN3-222ENST00000566083 ROBO2Q9HCK4 1378 aa22.12■■□□□ 1.13
CLN3-222ENST00000566083 RGL3Q3MIN7 710 aa22.11■■□□□ 1.13
CLN3-222ENST00000566083 SETD1AO15047 1707 aaKnown RBP22.11■■□□□ 1.13
CLN3-222ENST00000566083 SPATA31E1Q6ZUB1 1445 aa22.1■■□□□ 1.13
CLN3-222ENST00000566083 NALCNQ8IZF0 1738 aa22.09■■□□□ 1.13
CLN3-222ENST00000566083 C1orf167Q5SNV9 1468 aa22.09■■□□□ 1.13
CLN3-222ENST00000566083 NHSL1Q5SYE7 1610 aa22.08■■□□□ 1.12
CLN3-222ENST00000566083 ADGRF5Q8IZF2 1346 aa22.08■■□□□ 1.12
CLN3-222ENST00000566083 LRP6O75581 1613 aa22.07■■□□□ 1.12
CLN3-222ENST00000566083 NUTM2BA6NNL0 878 aaPredicted RBP22.05■■□□□ 1.12
CLN3-222ENST00000566083 NUTM2EB1AL46 878 aaPredicted RBP22.05■■□□□ 1.12
CLN3-222ENST00000566083 NUTM2AQ8IVF1 878 aaPredicted RBP22.05■■□□□ 1.12
CLN3-222ENST00000566083 TECPR2O15040 1411 aa22.03■■□□□ 1.12
CLN3-222ENST00000566083 LRPPRCP42704 1394 aaKnown RBP22.03■■□□□ 1.12
CLN3-222ENST00000566083 ABCC11Q96J66 1382 aa22.03■■□□□ 1.12
CLN3-222ENST00000566083 SOS2Q07890 1332 aaPredicted RBP22.02■■□□□ 1.11
CLN3-222ENST00000566083 PNPLA6Q8IY17 1366 aa22.01■■□□□ 1.11
CLN3-222ENST00000566083 PIK3C2GO75747 1445 aa22.01■■□□□ 1.11
CLN3-222ENST00000566083 ORAI2Q96SN7 254 aa22■■□□□ 1.11
CLN3-222ENST00000566083 LAMC1P11047 1609 aa21.99■■□□□ 1.11
CLN3-222ENST00000566083 DDX17Q92841 729 aaKnown RBP21.99■■□□□ 1.11
CLN3-222ENST00000566083 SIRT1Q96EB6 747 aa21.99■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms