RNA–Protein interactions for RNA: ENST00000565511.5

RAB40C-209, Transcript of RAB40C, member RAS oncogene family, humanhuman

TSL 3

Gene RAB40C, Length 783 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-209ENST00000565511 SENP3Q9H4L4 574 aaPredicted RBP36.39■■■■□ 3.42
RAB40C-209ENST00000565511 RRBP1Q9P2E9 1410 aaKnown RBP36.38■■■■□ 3.41
RAB40C-209ENST00000565511 NUP155O75694 1391 aa36.38■■■■□ 3.41
RAB40C-209ENST00000565511 NWD1Q149M9 1564 aa36.37■■■■□ 3.41
RAB40C-209ENST00000565511 RIMS2Q9UQ26 1411 aa36.37■■■■□ 3.41
RAB40C-209ENST00000565511 MED1Q15648 1581 aaPredicted RBP36.34■■■■□ 3.41
RAB40C-209ENST00000565511 TMEM94Q12767 1356 aa36.31■■■■□ 3.4
RAB40C-209ENST00000565511 KCNA6P17658 529 aa36.31■■■■□ 3.4
RAB40C-209ENST00000565511 PLEKHG1Q9ULL1 1385 aa36.3■■■■□ 3.4
RAB40C-209ENST00000565511 RBM33Q96EV2 1170 aaKnown RBP36.28■■■■□ 3.4
RAB40C-209ENST00000565511 CHD2O14647 1828 aaKnown RBP36.27■■■■□ 3.4
RAB40C-209ENST00000565511 SPHKAPQ2M3C7 1700 aa36.26■■■■□ 3.4
RAB40C-209ENST00000565511 CHGAP10645 457 aaKnown RBP36.26■■■■□ 3.4
RAB40C-209ENST00000565511 NKTRP30414 1462 aaKnown RBP36.25■■■■□ 3.39
RAB40C-209ENST00000565511 NUTM2DQ5VT03 806 aaPredicted RBP36.23■■■■□ 3.39
RAB40C-209ENST00000565511 BCANQ96GW7 911 aa36.22■■■■□ 3.39
RAB40C-209ENST00000565511 NAIPQ13075 1403 aa36.22■■■■□ 3.39
RAB40C-209ENST00000565511 ADAMTS13Q76LX8 1427 aa36.2■■■■□ 3.39
RAB40C-209ENST00000565511 PPP1R15AO75807 674 aaPredicted RBP36.2■■■■□ 3.39
RAB40C-209ENST00000565511 PROSER2Q86WR7 435 aaPredicted RBP36.19■■■■□ 3.38
RAB40C-209ENST00000565511 SOCS7O14512 581 aa36.14■■■■□ 3.38
RAB40C-209ENST00000565511 ROBO1Q9Y6N7 1651 aa36.13■■■■□ 3.37
RAB40C-209ENST00000565511 CLTCL1P53675 1640 aa36.12■■■■□ 3.37
RAB40C-209ENST00000565511 DIP2AQ14689 1571 aa36.11■■■■□ 3.37
RAB40C-209ENST00000565511 ABCF1Q8NE71 845 aaKnown RBP eCLIP36.11■■■■□ 3.37
RAB40C-209ENST00000565511 NRXN3Q9Y4C0 1643 aa36.11■■■■□ 3.37
RAB40C-209ENST00000565511 FAM135BQ49AJ0 1406 aa36.09■■■■□ 3.37
RAB40C-209ENST00000565511 HDGFP51858 240 aaKnown RBP36.09■■■■□ 3.37
RAB40C-209ENST00000565511 TBX22Q9Y458 520 aa36.09■■■■□ 3.37
RAB40C-209ENST00000565511 TRPM2O94759 1503 aa36.06■■■■□ 3.36
RAB40C-209ENST00000565511 HFM1A2PYH4 1435 aa36.05■■■■□ 3.36
RAB40C-209ENST00000565511 PTPRUQ92729 1446 aa36.03■■■■□ 3.36
RAB40C-209ENST00000565511 MSH6P52701 1360 aa36.02■■■■□ 3.36
RAB40C-209ENST00000565511 SETBP1Q9Y6X0 1596 aa36■■■■□ 3.35
RAB40C-209ENST00000565511 NEXMIFQ5QGS0 1516 aa35.98■■■■□ 3.35
RAB40C-209ENST00000565511 PIK3R4Q99570 1358 aa35.96■■■■□ 3.35
RAB40C-209ENST00000565511 XRN1Q8IZH2 1706 aaKnown RBP35.96■■■■□ 3.35
RAB40C-209ENST00000565511 KIF1BO60333 1816 aa35.95■■■■□ 3.35
RAB40C-209ENST00000565511 SIPA1L2Q9P2F8 1722 aaPredicted RBP35.94■■■■□ 3.34
RAB40C-209ENST00000565511 ZNF326Q5BKZ1 582 aaKnown RBP35.91■■■■□ 3.34
RAB40C-209ENST00000565511 NCOA3Q9Y6Q9 1424 aa35.9■■■■□ 3.34
RAB40C-209ENST00000565511 PHLPP1O60346 1717 aa35.89■■■■□ 3.34
RAB40C-209ENST00000565511 TRIM52Q96A61 297 aa35.89■■■■□ 3.34
RAB40C-209ENST00000565511 SLAIN2Q9P270 581 aa35.89■■■■□ 3.34
RAB40C-209ENST00000565511 AMOTL2Q9Y2J4 779 aa35.88■■■■□ 3.33
RAB40C-209ENST00000565511 PHF23Q9BUL5 403 aaPredicted RBP35.87■■■■□ 3.33
RAB40C-209ENST00000565511 METP08581 1390 aa35.87■■■■□ 3.33
RAB40C-209ENST00000565511 COL16A1Q07092 1604 aaPredicted RBP35.82■■■■□ 3.32
RAB40C-209ENST00000565511 SETD1AO15047 1707 aaKnown RBP35.81■■■■□ 3.32
RAB40C-209ENST00000565511 C14orf37Q86TY3 774 aa35.81■■■■□ 3.32
RAB40C-209ENST00000565511 RGS17Q9UGC6 210 aaPredicted RBP35.81■■■■□ 3.32
RAB40C-209ENST00000565511 SLC4A1APQ9BWU0 796 aaKnown RBP35.79■■■■□ 3.32
RAB40C-209ENST00000565511 FOXD1Q16676 465 aa35.76■■■■□ 3.32
RAB40C-209ENST00000565511 C19orf44Q9H6X5 657 aa35.76■■■■□ 3.32
RAB40C-209ENST00000565511 PPLO60437 1756 aa35.75■■■■□ 3.31
RAB40C-209ENST00000565511 AHDC1Q5TGY3 1603 aaPredicted RBP35.72■■■■□ 3.31
RAB40C-209ENST00000565511 NALCNQ8IZF0 1738 aa35.71■■■■□ 3.31
RAB40C-209ENST00000565511 CADPS2Q86UW7 1296 aa35.71■■■■□ 3.31
RAB40C-209ENST00000565511 ATF3P18847 181 aa35.69■■■■□ 3.3
RAB40C-209ENST00000565511 DCCP43146 1447 aa35.68■■■■□ 3.3
RAB40C-209ENST00000565511 JCADQ9P266 1359 aa35.65■■■■□ 3.3
RAB40C-209ENST00000565511 MST1RQ04912 1400 aa35.65■■■■□ 3.3
RAB40C-209ENST00000565511 ADGRL3Q9HAR2 1447 aa35.64■■■■□ 3.3
RAB40C-209ENST00000565511 BRINP3Q76B58 766 aa35.63■■■■□ 3.29
RAB40C-209ENST00000565511 ASXL1Q8IXJ9 1541 aa35.62■■■■□ 3.29
RAB40C-209ENST00000565511 LRP6O75581 1613 aa35.61■■■■□ 3.29
RAB40C-209ENST00000565511 IFT172Q9UG01 1749 aa35.59■■■■□ 3.29
RAB40C-209ENST00000565511 SHPRHQ149N8 1683 aa35.59■■■■□ 3.29
RAB40C-209ENST00000565511 VGFO15240 615 aaPredicted RBP35.58■■■■□ 3.29
RAB40C-209ENST00000565511 POTEAQ6S8J7 498 aa35.58■■■■□ 3.29
RAB40C-209ENST00000565511 ROBO2Q9HCK4 1378 aa35.58■■■■□ 3.29
RAB40C-209ENST00000565511 RPGRIP1LQ68CZ1 1315 aa35.57■■■■□ 3.29
RAB40C-209ENST00000565511 PTCH1Q13635 1447 aa35.57■■■■□ 3.29
RAB40C-209ENST00000565511 NHSL1Q5SYE7 1610 aa35.57■■■■□ 3.29
RAB40C-209ENST00000565511 MPHOSPH9Q99550 1183 aa35.57■■■■□ 3.28
RAB40C-209ENST00000565511 SPATA31E1Q6ZUB1 1445 aa35.57■■■■□ 3.28
RAB40C-209ENST00000565511 CCDC144AA2RUR9 1427 aa35.55■■■■□ 3.28
RAB40C-209ENST00000565511 PRAG1Q86YV5 1406 aa35.54■■■■□ 3.28
RAB40C-209ENST00000565511 ADGRF5Q8IZF2 1346 aa35.51■■■■□ 3.27
RAB40C-209ENST00000565511 SETD5Q9C0A6 1442 aa35.48■■■■□ 3.27
RAB40C-209ENST00000565511 RGL3Q3MIN7 710 aa35.46■■■■□ 3.27
RAB40C-209ENST00000565511 DDX17Q92841 729 aaKnown RBP35.46■■■■□ 3.27
RAB40C-209ENST00000565511 C1orf167Q5SNV9 1468 aa35.44■■■■□ 3.26
RAB40C-209ENST00000565511 SPATA31A6Q5VVP1 1343 aa35.44■■■■□ 3.26
RAB40C-209ENST00000565511 RAB3GAP2Q9H2M9 1393 aa35.38■■■■□ 3.26
RAB40C-209ENST00000565511 LAMC1P11047 1609 aa35.38■■■■□ 3.25
RAB40C-209ENST00000565511 PIK3C2GO75747 1445 aa35.36■■■■□ 3.25
RAB40C-209ENST00000565511 ANKRD30BQ9BXX2 1392 aa35.36■■■■□ 3.25
RAB40C-209ENST00000565511 KNDC1Q76NI1 1749 aa35.34■■■■□ 3.25
RAB40C-209ENST00000565511 CDC42BPGQ6DT37 1551 aa35.33■■■■□ 3.25
RAB40C-209ENST00000565511 ORAI2Q96SN7 254 aa35.32■■■■□ 3.24
RAB40C-209ENST00000565511 TECPR2O15040 1411 aa35.32■■■■□ 3.24
RAB40C-209ENST00000565511 NUTM2BA6NNL0 878 aaPredicted RBP35.31■■■■□ 3.24
RAB40C-209ENST00000565511 NUTM2EB1AL46 878 aaPredicted RBP35.31■■■■□ 3.24
RAB40C-209ENST00000565511 MEX3CQ5U5Q3 659 aaKnown RBP35.31■■■■□ 3.24
RAB40C-209ENST00000565511 NUTM2AQ8IVF1 878 aaPredicted RBP35.31■■■■□ 3.24
RAB40C-209ENST00000565511 PNPLA6Q8IY17 1366 aa35.3■■■■□ 3.24
RAB40C-209ENST00000565511 LRPPRCP42704 1394 aaKnown RBP35.29■■■■□ 3.24
RAB40C-209ENST00000565511 TMEM132EQ6IEE7 984 aa35.29■■■■□ 3.24
RAB40C-209ENST00000565511 STK26Q9P289 416 aa35.29■■■■□ 3.24
Retrieved 100 of 20,778 RNA–protein pairs in 77.9 ms