RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 PLEKHG1Q9ULL1 1385 aa26.25■■□□□ 1.79
CLN3-216ENST00000565316 RIMS2Q9UQ26 1411 aa26.24■■□□□ 1.79
CLN3-216ENST00000565316 HDGFP51858 240 aaKnown RBP26.24■■□□□ 1.79
CLN3-216ENST00000565316 E9PCH4 1651 aa26.24■■□□□ 1.79
CLN3-216ENST00000565316 NWD1Q149M9 1564 aa26.23■■□□□ 1.79
CLN3-216ENST00000565316 NKTRP30414 1462 aaKnown RBP26.23■■□□□ 1.79
CLN3-216ENST00000565316 NUP155O75694 1391 aa26.22■■□□□ 1.79
CLN3-216ENST00000565316 PROSER2Q86WR7 435 aaPredicted RBP26.22■■□□□ 1.79
CLN3-216ENST00000565316 FAM135BQ49AJ0 1406 aa26.22■■□□□ 1.79
CLN3-216ENST00000565316 PPARGC1BQ86YN6 1023 aaKnown RBP26.21■■□□□ 1.79
CLN3-216ENST00000565316 MYO5BQ9ULV0 1848 aa26.21■■□□□ 1.79
CLN3-216ENST00000565316 ITGAEP38570 1179 aa26.2■■□□□ 1.79
CLN3-216ENST00000565316 BCANQ96GW7 911 aa26.19■■□□□ 1.78
CLN3-216ENST00000565316 PPP1R15AO75807 674 aaPredicted RBP26.18■■□□□ 1.78
CLN3-216ENST00000565316 ABCF1Q8NE71 845 aaKnown RBP eCLIP26.18■■□□□ 1.78
CLN3-216ENST00000565316 SENP3Q9H4L4 574 aaPredicted RBP26.16■■□□□ 1.78
CLN3-216ENST00000565316 TBX22Q9Y458 520 aa26.16■■□□□ 1.78
CLN3-216ENST00000565316 CHGAP10645 457 aaKnown RBP26.14■■□□□ 1.78
CLN3-216ENST00000565316 RBM33Q96EV2 1170 aaKnown RBP26.14■■□□□ 1.78
CLN3-216ENST00000565316 CHD2O14647 1828 aaKnown RBP26.12■■□□□ 1.77
CLN3-216ENST00000565316 ADAMTS13Q76LX8 1427 aa26.11■■□□□ 1.77
CLN3-216ENST00000565316 RRBP1Q9P2E9 1410 aaKnown RBP26.11■■□□□ 1.77
CLN3-216ENST00000565316 MSH6P52701 1360 aa26.09■■□□□ 1.77
CLN3-216ENST00000565316 PHF23Q9BUL5 403 aaPredicted RBP26.09■■□□□ 1.77
CLN3-216ENST00000565316 PIK3R4Q99570 1358 aa26.07■■□□□ 1.76
CLN3-216ENST00000565316 DIP2AQ14689 1571 aa26.07■■□□□ 1.76
CLN3-216ENST00000565316 NCOA3Q9Y6Q9 1424 aa26.07■■□□□ 1.76
CLN3-216ENST00000565316 NUTM2DQ5VT03 806 aaPredicted RBP26.07■■□□□ 1.76
CLN3-216ENST00000565316 ROBO1Q9Y6N7 1651 aa26.05■■□□□ 1.76
CLN3-216ENST00000565316 SLAIN2Q9P270 581 aa26.05■■□□□ 1.76
CLN3-216ENST00000565316 NAIPQ13075 1403 aa26.02■■□□□ 1.76
CLN3-216ENST00000565316 SPHKAPQ2M3C7 1700 aa26■■□□□ 1.75
CLN3-216ENST00000565316 RGS17Q9UGC6 210 aaPredicted RBP25.98■■□□□ 1.75
CLN3-216ENST00000565316 TRPM2O94759 1503 aa25.98■■□□□ 1.75
CLN3-216ENST00000565316 PTPRUQ92729 1446 aa25.97■■□□□ 1.75
CLN3-216ENST00000565316 C19orf44Q9H6X5 657 aa25.95■■□□□ 1.75
CLN3-216ENST00000565316 AMOTL2Q9Y2J4 779 aa25.95■■□□□ 1.75
CLN3-216ENST00000565316 SETBP1Q9Y6X0 1596 aa25.95■■□□□ 1.74
CLN3-216ENST00000565316 NRXN3Q9Y4C0 1643 aa25.93■■□□□ 1.74
CLN3-216ENST00000565316 HFM1A2PYH4 1435 aa25.92■■□□□ 1.74
CLN3-216ENST00000565316 CADPS2Q86UW7 1296 aa25.92■■□□□ 1.74
CLN3-216ENST00000565316 ZNF326Q5BKZ1 582 aaKnown RBP25.91■■□□□ 1.74
CLN3-216ENST00000565316 C14orf37Q86TY3 774 aa25.91■■□□□ 1.74
CLN3-216ENST00000565316 CLTCL1P53675 1640 aa25.91■■□□□ 1.74
CLN3-216ENST00000565316 SIPA1L2Q9P2F8 1722 aaPredicted RBP25.9■■□□□ 1.74
CLN3-216ENST00000565316 ATF3P18847 181 aa25.88■■□□□ 1.73
CLN3-216ENST00000565316 PHLPP1O60346 1717 aa25.88■■□□□ 1.73
CLN3-216ENST00000565316 JCADQ9P266 1359 aa25.88■■□□□ 1.73
CLN3-216ENST00000565316 XRN1Q8IZH2 1706 aaKnown RBP25.87■■□□□ 1.73
CLN3-216ENST00000565316 NEXMIFQ5QGS0 1516 aa25.87■■□□□ 1.73
CLN3-216ENST00000565316 METP08581 1390 aa25.86■■□□□ 1.73
CLN3-216ENST00000565316 COL16A1Q07092 1604 aaPredicted RBP25.85■■□□□ 1.73
CLN3-216ENST00000565316 DCCP43146 1447 aa25.85■■□□□ 1.73
CLN3-216ENST00000565316 TRIM52Q96A61 297 aa25.83■■□□□ 1.73
CLN3-216ENST00000565316 AHDC1Q5TGY3 1603 aaPredicted RBP25.82■■□□□ 1.72
CLN3-216ENST00000565316 POTEAQ6S8J7 498 aa25.81■■□□□ 1.72
CLN3-216ENST00000565316 KIF1BO60333 1816 aa25.79■■□□□ 1.72
CLN3-216ENST00000565316 BRINP3Q76B58 766 aa25.79■■□□□ 1.72
CLN3-216ENST00000565316 SLC4A1APQ9BWU0 796 aaKnown RBP25.79■■□□□ 1.72
CLN3-216ENST00000565316 VGFO15240 615 aaPredicted RBP25.77■■□□□ 1.72
CLN3-216ENST00000565316 SPATA31A6Q5VVP1 1343 aa25.76■■□□□ 1.71
CLN3-216ENST00000565316 RPGRIP1LQ68CZ1 1315 aa25.76■■□□□ 1.71
CLN3-216ENST00000565316 MST1RQ04912 1400 aa25.74■■□□□ 1.71
CLN3-216ENST00000565316 ADGRL3Q9HAR2 1447 aa25.74■■□□□ 1.71
CLN3-216ENST00000565316 ASXL1Q8IXJ9 1541 aa25.71■■□□□ 1.71
CLN3-216ENST00000565316 LRP6O75581 1613 aa25.71■■□□□ 1.71
CLN3-216ENST00000565316 SHPRHQ149N8 1683 aa25.7■■□□□ 1.7
CLN3-216ENST00000565316 PTCH1Q13635 1447 aa25.69■■□□□ 1.7
CLN3-216ENST00000565316 PRAG1Q86YV5 1406 aa25.69■■□□□ 1.7
CLN3-216ENST00000565316 SETD1AO15047 1707 aaKnown RBP25.69■■□□□ 1.7
CLN3-216ENST00000565316 SETD5Q9C0A6 1442 aa25.67■■□□□ 1.7
CLN3-216ENST00000565316 FOXD1Q16676 465 aa25.66■■□□□ 1.7
CLN3-216ENST00000565316 ROBO2Q9HCK4 1378 aa25.65■■□□□ 1.7
CLN3-216ENST00000565316 NALCNQ8IZF0 1738 aa25.65■■□□□ 1.7
CLN3-216ENST00000565316 PPLO60437 1756 aa25.64■■□□□ 1.7
CLN3-216ENST00000565316 NHSL1Q5SYE7 1610 aa25.64■■□□□ 1.7
CLN3-216ENST00000565316 MEX3CQ5U5Q3 659 aaKnown RBP25.62■■□□□ 1.69
CLN3-216ENST00000565316 MPHOSPH9Q99550 1183 aa25.62■■□□□ 1.69
CLN3-216ENST00000565316 LRRC59Q96AG4 307 aaKnown RBP25.61■■□□□ 1.69
CLN3-216ENST00000565316 CCDC144AA2RUR9 1427 aa25.61■■□□□ 1.69
CLN3-216ENST00000565316 SPATA31E1Q6ZUB1 1445 aa25.61■■□□□ 1.69
CLN3-216ENST00000565316 C1orf167Q5SNV9 1468 aa25.6■■□□□ 1.69
CLN3-216ENST00000565316 ZNF772Q68DY9 489 aaPredicted RBP25.6■■□□□ 1.69
CLN3-216ENST00000565316 DDX17Q92841 729 aaKnown RBP25.57■■□□□ 1.68
CLN3-216ENST00000565316 ADGRF5Q8IZF2 1346 aa25.57■■□□□ 1.68
CLN3-216ENST00000565316 ACIN1Q9UKV3 1341 aaKnown RBP25.56■■□□□ 1.68
CLN3-216ENST00000565316 ANKRD30BQ9BXX2 1392 aa25.55■■□□□ 1.68
CLN3-216ENST00000565316 LAMC1P11047 1609 aa25.54■■□□□ 1.68
CLN3-216ENST00000565316 NUTM2BA6NNL0 878 aaPredicted RBP25.54■■□□□ 1.68
CLN3-216ENST00000565316 NUTM2EB1AL46 878 aaPredicted RBP25.54■■□□□ 1.68
CLN3-216ENST00000565316 NUTM2AQ8IVF1 878 aaPredicted RBP25.54■■□□□ 1.68
CLN3-216ENST00000565316 PNPLA6Q8IY17 1366 aa25.54■■□□□ 1.68
CLN3-216ENST00000565316 RGL3Q3MIN7 710 aa25.53■■□□□ 1.68
CLN3-216ENST00000565316 ORAI2Q96SN7 254 aa25.51■■□□□ 1.67
CLN3-216ENST00000565316 TECPR2O15040 1411 aa25.5■■□□□ 1.67
CLN3-216ENST00000565316 SOS2Q07890 1332 aaPredicted RBP25.5■■□□□ 1.67
CLN3-216ENST00000565316 IFT172Q9UG01 1749 aa25.49■■□□□ 1.67
CLN3-216ENST00000565316 LRPPRCP42704 1394 aaKnown RBP25.48■■□□□ 1.67
CLN3-216ENST00000565316 PIK3C2GO75747 1445 aa25.47■■□□□ 1.67
CLN3-216ENST00000565316 ABCC11Q96J66 1382 aa25.47■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms