RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 HDGFP51858 240 aaKnown RBP20.03■□□□□ 0.8
CLK3-216ENST00000564468 PHF23Q9BUL5 403 aaPredicted RBP20.02■□□□□ 0.8
CLK3-216ENST00000564468 TMEM131LA2VDJ0 1609 aa20.01■□□□□ 0.79
CLK3-216ENST00000564468 LTKP29376 864 aa20■□□□□ 0.79
CLK3-216ENST00000564468 CHGAP10645 457 aaKnown RBP19.99■□□□□ 0.79
CLK3-216ENST00000564468 SLC4A1APQ9BWU0 796 aaKnown RBP19.99■□□□□ 0.79
CLK3-216ENST00000564468 SETD5Q9C0A6 1442 aa19.96■□□□□ 0.79
CLK3-216ENST00000564468 KIF1BO60333 1816 aa19.96■□□□□ 0.79
CLK3-216ENST00000564468 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.95■□□□□ 0.78
CLK3-216ENST00000564468 TRPM2O94759 1503 aa19.94■□□□□ 0.78
CLK3-216ENST00000564468 MED1Q15648 1581 aaPredicted RBP19.94■□□□□ 0.78
CLK3-216ENST00000564468 RIMS2Q9UQ26 1411 aa19.93■□□□□ 0.78
CLK3-216ENST00000564468 PPP1R15AO75807 674 aaPredicted RBP19.93■□□□□ 0.78
CLK3-216ENST00000564468 ZFYVE9O95405 1425 aa19.92■□□□□ 0.78
CLK3-216ENST00000564468 BCANQ96GW7 911 aa19.91■□□□□ 0.78
CLK3-216ENST00000564468 CLTCL1P53675 1640 aa19.89■□□□□ 0.77
CLK3-216ENST00000564468 PLEKHG1Q9ULL1 1385 aa19.89■□□□□ 0.77
CLK3-216ENST00000564468 STRCP1A6NGW2 1772 aa19.88■□□□□ 0.77
CLK3-216ENST00000564468 MPHOSPH9Q99550 1183 aa19.88■□□□□ 0.77
CLK3-216ENST00000564468 ZNF326Q5BKZ1 582 aaKnown RBP19.87■□□□□ 0.77
CLK3-216ENST00000564468 RAB3GAP2Q9H2M9 1393 aa19.86■□□□□ 0.77
CLK3-216ENST00000564468 SLC26A8Q96RN1 970 aa19.85■□□□□ 0.77
CLK3-216ENST00000564468 HRCP23327 699 aa19.84■□□□□ 0.77
CLK3-216ENST00000564468 CHD2O14647 1828 aaKnown RBP19.82■□□□□ 0.76
CLK3-216ENST00000564468 KCNA6P17658 529 aa19.82■□□□□ 0.76
CLK3-216ENST00000564468 SENP3Q9H4L4 574 aaPredicted RBP19.82■□□□□ 0.76
CLK3-216ENST00000564468 DIP2AQ14689 1571 aa19.82■□□□□ 0.76
CLK3-216ENST00000564468 TBX22Q9Y458 520 aa19.81■□□□□ 0.76
CLK3-216ENST00000564468 LRRC7Q96NW7 1537 aa19.81■□□□□ 0.76
CLK3-216ENST00000564468 CCDC144AA2RUR9 1427 aa19.8■□□□□ 0.76
CLK3-216ENST00000564468 FOXD1Q16676 465 aa19.8■□□□□ 0.76
CLK3-216ENST00000564468 NUTM2DQ5VT03 806 aaPredicted RBP19.8■□□□□ 0.76
CLK3-216ENST00000564468 RPGRIP1LQ68CZ1 1315 aa19.78■□□□□ 0.76
CLK3-216ENST00000564468 NEXMIFQ5QGS0 1516 aa19.77■□□□□ 0.76
CLK3-216ENST00000564468 NWD1Q149M9 1564 aa19.77■□□□□ 0.76
CLK3-216ENST00000564468 NKTRP30414 1462 aaKnown RBP19.76■□□□□ 0.75
CLK3-216ENST00000564468 PIK3R4Q99570 1358 aa19.76■□□□□ 0.75
CLK3-216ENST00000564468 XIRP1Q702N8 1843 aaKnown RBP19.76■□□□□ 0.75
CLK3-216ENST00000564468 ADAMTS13Q76LX8 1427 aa19.76■□□□□ 0.75
CLK3-216ENST00000564468 SETBP1Q9Y6X0 1596 aa19.75■□□□□ 0.75
CLK3-216ENST00000564468 VGFO15240 615 aaPredicted RBP19.75■□□□□ 0.75
CLK3-216ENST00000564468 PPLO60437 1756 aa19.75■□□□□ 0.75
CLK3-216ENST00000564468 PROSER2Q86WR7 435 aaPredicted RBP19.74■□□□□ 0.75
CLK3-216ENST00000564468 ALKQ9UM73 1620 aa19.73■□□□□ 0.75
CLK3-216ENST00000564468 NRXN3Q9Y4C0 1643 aa19.72■□□□□ 0.75
CLK3-216ENST00000564468 TMEM94Q12767 1356 aa19.7■□□□□ 0.74
CLK3-216ENST00000564468 SPATA31E1Q6ZUB1 1445 aa19.68■□□□□ 0.74
CLK3-216ENST00000564468 RGL3Q3MIN7 710 aa19.67■□□□□ 0.74
CLK3-216ENST00000564468 IFT172Q9UG01 1749 aa19.67■□□□□ 0.74
CLK3-216ENST00000564468 ANKRD30BQ9BXX2 1392 aa19.67■□□□□ 0.74
CLK3-216ENST00000564468 NCOA3Q9Y6Q9 1424 aa19.67■□□□□ 0.74
CLK3-216ENST00000564468 RGS17Q9UGC6 210 aaPredicted RBP19.66■□□□□ 0.74
CLK3-216ENST00000564468 AMOTL2Q9Y2J4 779 aa19.65■□□□□ 0.74
CLK3-216ENST00000564468 FAM135BQ49AJ0 1406 aa19.65■□□□□ 0.74
CLK3-216ENST00000564468 MSH6P52701 1360 aa19.64■□□□□ 0.73
CLK3-216ENST00000564468 XRN1Q8IZH2 1706 aaKnown RBP19.62■□□□□ 0.73
CLK3-216ENST00000564468 SETD1AO15047 1707 aaKnown RBP19.62■□□□□ 0.73
CLK3-216ENST00000564468 PTPRUQ92729 1446 aa19.61■□□□□ 0.73
CLK3-216ENST00000564468 METP08581 1390 aa19.61■□□□□ 0.73
CLK3-216ENST00000564468 C14orf37Q86TY3 774 aa19.6■□□□□ 0.73
CLK3-216ENST00000564468 RBM33Q96EV2 1170 aaKnown RBP19.6■□□□□ 0.73
CLK3-216ENST00000564468 ADGRF5Q8IZF2 1346 aa19.57■□□□□ 0.72
CLK3-216ENST00000564468 C19orf44Q9H6X5 657 aa19.57■□□□□ 0.72
CLK3-216ENST00000564468 TRIM26Q12899 539 aaPredicted RBP19.56■□□□□ 0.72
CLK3-216ENST00000564468 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.56■□□□□ 0.72
CLK3-216ENST00000564468 POTEAQ6S8J7 498 aa19.55■□□□□ 0.72
CLK3-216ENST00000564468 CADPS2Q86UW7 1296 aa19.55■□□□□ 0.72
CLK3-216ENST00000564468 STAC3Q96MF2 364 aa19.55■□□□□ 0.72
CLK3-216ENST00000564468 MYOM2P54296 1465 aa19.54■□□□□ 0.72
CLK3-216ENST00000564468 ATF3P18847 181 aa19.54■□□□□ 0.72
CLK3-216ENST00000564468 PIK3C2GO75747 1445 aa19.53■□□□□ 0.72
CLK3-216ENST00000564468 LAMC1P11047 1609 aa19.53■□□□□ 0.72
CLK3-216ENST00000564468 PTCH1Q13635 1447 aa19.52■□□□□ 0.72
CLK3-216ENST00000564468 SLAIN2Q9P270 581 aa19.52■□□□□ 0.72
CLK3-216ENST00000564468 DCCP43146 1447 aa19.51■□□□□ 0.71
CLK3-216ENST00000564468 PRAG1Q86YV5 1406 aa19.51■□□□□ 0.71
CLK3-216ENST00000564468 ROBO1Q9Y6N7 1651 aa19.51■□□□□ 0.71
CLK3-216ENST00000564468 NRXN1Q9ULB1 1477 aa19.5■□□□□ 0.71
CLK3-216ENST00000564468 C14orf93Q9H972 538 aaKnown RBP19.48■□□□□ 0.71
CLK3-216ENST00000564468 KNDC1Q76NI1 1749 aa19.48■□□□□ 0.71
CLK3-216ENST00000564468 DCAF11Q8TEB1 546 aa19.47■□□□□ 0.71
CLK3-216ENST00000564468 ADGRL3Q9HAR2 1447 aa19.47■□□□□ 0.71
CLK3-216ENST00000564468 JCADQ9P266 1359 aa19.46■□□□□ 0.71
CLK3-216ENST00000564468 NALCNQ8IZF0 1738 aa19.46■□□□□ 0.71
CLK3-216ENST00000564468 LRPPRCP42704 1394 aaKnown RBP19.45■□□□□ 0.7
CLK3-216ENST00000564468 ROBO2Q9HCK4 1378 aa19.45■□□□□ 0.7
CLK3-216ENST00000564468 KDM2AQ9Y2K7 1162 aa19.45■□□□□ 0.7
CLK3-216ENST00000564468 DHX57Q6P158 1386 aaKnown RBP19.44■□□□□ 0.7
CLK3-216ENST00000564468 ABCC11Q96J66 1382 aa19.44■□□□□ 0.7
CLK3-216ENST00000564468 TECPR2O15040 1411 aa19.44■□□□□ 0.7
CLK3-216ENST00000564468 CFAP70Q5T0N1 1121 aa19.43■□□□□ 0.7
CLK3-216ENST00000564468 TMEM132EQ6IEE7 984 aa19.43■□□□□ 0.7
CLK3-216ENST00000564468 STK26Q9P289 416 aa19.43■□□□□ 0.7
CLK3-216ENST00000564468 YTHDC2Q9H6S0 1430 aaKnown RBP19.42■□□□□ 0.7
CLK3-216ENST00000564468 ASXL1Q8IXJ9 1541 aa19.42■□□□□ 0.7
CLK3-216ENST00000564468 PHLPP1O60346 1717 aa19.42■□□□□ 0.7
CLK3-216ENST00000564468 MEX3CQ5U5Q3 659 aaKnown RBP19.41■□□□□ 0.7
CLK3-216ENST00000564468 SIRT1Q96EB6 747 aa19.41■□□□□ 0.7
CLK3-216ENST00000564468 ZNF772Q68DY9 489 aaPredicted RBP19.4■□□□□ 0.7
CLK3-216ENST00000564468 SPATA31A6Q5VVP1 1343 aa19.39■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms