RNA–Protein interactions for RNA: ENST00000564247.1

CMTM3-208, Transcript of CKLF like MARVEL transmembrane domain containing 3, humanhuman

TSL 2

Gene CMTM3, Length 1,127 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3-208ENST00000564247 CPS1P31327 1500 aa24.76■■□□□ 1.55
CMTM3-208ENST00000564247 TMEM131LA2VDJ0 1609 aa24.75■■□□□ 1.55
CMTM3-208ENST00000564247 SPHKAPQ2M3C7 1700 aa24.73■■□□□ 1.55
CMTM3-208ENST00000564247 CLSPNQ9HAW4 1339 aa24.73■■□□□ 1.55
CMTM3-208ENST00000564247 FOXD1Q16676 465 aa24.69■■□□□ 1.54
CMTM3-208ENST00000564247 ZFYVE9O95405 1425 aa24.69■■□□□ 1.54
CMTM3-208ENST00000564247 STRCP1A6NGW2 1772 aa24.67■■□□□ 1.54
CMTM3-208ENST00000564247 CHGAP10645 457 aaKnown RBP24.65■■□□□ 1.54
CMTM3-208ENST00000564247 HDGFP51858 240 aaKnown RBP24.65■■□□□ 1.54
CMTM3-208ENST00000564247 RIMS2Q9UQ26 1411 aa24.65■■□□□ 1.54
CMTM3-208ENST00000564247 TRPM2O94759 1503 aa24.62■■□□□ 1.53
CMTM3-208ENST00000564247 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.61■■□□□ 1.53
CMTM3-208ENST00000564247 ANKRD30BQ9BXX2 1392 aa24.61■■□□□ 1.53
CMTM3-208ENST00000564247 PLEKHG1Q9ULL1 1385 aa24.61■■□□□ 1.53
CMTM3-208ENST00000564247 CLTCL1P53675 1640 aa24.59■■□□□ 1.53
CMTM3-208ENST00000564247 LRRC7Q96NW7 1537 aa24.59■■□□□ 1.53
CMTM3-208ENST00000564247 UBAP1LF5GYI3 381 aa24.58■■□□□ 1.53
CMTM3-208ENST00000564247 PPP1R15AO75807 674 aaPredicted RBP24.58■■□□□ 1.53
CMTM3-208ENST00000564247 SLC26A8Q96RN1 970 aa24.58■■□□□ 1.53
CMTM3-208ENST00000564247 NEUROD1Q13562 356 aa24.57■■□□□ 1.52
CMTM3-208ENST00000564247 SIN3AQ96ST3 1273 aa24.56■■□□□ 1.52
CMTM3-208ENST00000564247 BCANQ96GW7 911 aa24.55■■□□□ 1.52
CMTM3-208ENST00000564247 KIF1BO60333 1816 aa24.55■■□□□ 1.52
CMTM3-208ENST00000564247 KCNA6P17658 529 aa24.53■■□□□ 1.52
CMTM3-208ENST00000564247 ZEB1P37275 1124 aaPredicted RBP24.53■■□□□ 1.52
CMTM3-208ENST00000564247 NWD1Q149M9 1564 aa24.51■■□□□ 1.51
CMTM3-208ENST00000564247 TOM1O60784 492 aa24.51■■□□□ 1.51
CMTM3-208ENST00000564247 NUTM2DQ5VT03 806 aaPredicted RBP24.51■■□□□ 1.51
CMTM3-208ENST00000564247 CCDC144AA2RUR9 1427 aa24.51■■□□□ 1.51
CMTM3-208ENST00000564247 XIRP1Q702N8 1843 aaKnown RBP24.5■■□□□ 1.51
CMTM3-208ENST00000564247 TBX22Q9Y458 520 aa24.5■■□□□ 1.51
CMTM3-208ENST00000564247 ZNF326Q5BKZ1 582 aaKnown RBP24.49■■□□□ 1.51
CMTM3-208ENST00000564247 DIP2AQ14689 1571 aa24.49■■□□□ 1.51
CMTM3-208ENST00000564247 CHD2O14647 1828 aaKnown RBP24.49■■□□□ 1.51
CMTM3-208ENST00000564247 ADAMTS13Q76LX8 1427 aa24.48■■□□□ 1.51
CMTM3-208ENST00000564247 SENP3Q9H4L4 574 aaPredicted RBP24.48■■□□□ 1.51
CMTM3-208ENST00000564247 NKTRP30414 1462 aaKnown RBP24.47■■□□□ 1.51
CMTM3-208ENST00000564247 ALKQ9UM73 1620 aa24.46■■□□□ 1.51
CMTM3-208ENST00000564247 NEXMIFQ5QGS0 1516 aa24.45■■□□□ 1.51
CMTM3-208ENST00000564247 TIMELESSQ9UNS1 1208 aa24.45■■□□□ 1.5
CMTM3-208ENST00000564247 SETBP1Q9Y6X0 1596 aa24.43■■□□□ 1.5
CMTM3-208ENST00000564247 NRXN3Q9Y4C0 1643 aa24.43■■□□□ 1.5
CMTM3-208ENST00000564247 PIK3R4Q99570 1358 aa24.42■■□□□ 1.5
CMTM3-208ENST00000564247 TMEM94Q12767 1356 aa24.42■■□□□ 1.5
CMTM3-208ENST00000564247 TONSLQ96HA7 1378 aa24.42■■□□□ 1.5
CMTM3-208ENST00000564247 PROSER2Q86WR7 435 aaPredicted RBP24.41■■□□□ 1.5
CMTM3-208ENST00000564247 PIP4K2BP78356 416 aa24.4■■□□□ 1.5
CMTM3-208ENST00000564247 RPGRIP1LQ68CZ1 1315 aa24.38■■□□□ 1.49
CMTM3-208ENST00000564247 SCAF1Q9H7N4 1312 aaKnown RBP24.38■■□□□ 1.49
CMTM3-208ENST00000564247 PPLO60437 1756 aa24.36■■□□□ 1.49
CMTM3-208ENST00000564247 RGL3Q3MIN7 710 aa24.35■■□□□ 1.49
CMTM3-208ENST00000564247 VGFO15240 615 aaPredicted RBP24.34■■□□□ 1.49
CMTM3-208ENST00000564247 RBM33Q96EV2 1170 aaKnown RBP24.33■■□□□ 1.49
CMTM3-208ENST00000564247 SPATA31E1Q6ZUB1 1445 aa24.33■■□□□ 1.49
CMTM3-208ENST00000564247 PTPRUQ92729 1446 aa24.33■■□□□ 1.49
CMTM3-208ENST00000564247 L3MBTL2Q969R5 705 aa24.32■■□□□ 1.48
CMTM3-208ENST00000564247 NCOA3Q9Y6Q9 1424 aa24.32■■□□□ 1.48
CMTM3-208ENST00000564247 AMOTL2Q9Y2J4 779 aa24.31■■□□□ 1.48
CMTM3-208ENST00000564247 XRN1Q8IZH2 1706 aaKnown RBP24.3■■□□□ 1.48
CMTM3-208ENST00000564247 HSPA1LP34931 641 aa24.29■■□□□ 1.48
CMTM3-208ENST00000564247 METP08581 1390 aa24.29■■□□□ 1.48
CMTM3-208ENST00000564247 MSH6P52701 1360 aa24.29■■□□□ 1.48
CMTM3-208ENST00000564247 SETD1AO15047 1707 aaKnown RBP24.27■■□□□ 1.48
CMTM3-208ENST00000564247 IFT172Q9UG01 1749 aa24.27■■□□□ 1.48
CMTM3-208ENST00000564247 DCAF11Q8TEB1 546 aa24.27■■□□□ 1.48
CMTM3-208ENST00000564247 STAC3Q96MF2 364 aa24.26■■□□□ 1.47
CMTM3-208ENST00000564247 KDM2AQ9Y2K7 1162 aa24.24■■□□□ 1.47
CMTM3-208ENST00000564247 FAM135BQ49AJ0 1406 aa24.24■■□□□ 1.47
CMTM3-208ENST00000564247 C14orf37Q86TY3 774 aa24.21■■□□□ 1.47
CMTM3-208ENST00000564247 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.21■■□□□ 1.47
CMTM3-208ENST00000564247 C19orf44Q9H6X5 657 aa24.2■■□□□ 1.46
CMTM3-208ENST00000564247 ADGRF5Q8IZF2 1346 aa24.19■■□□□ 1.46
CMTM3-208ENST00000564247 ROBO1Q9Y6N7 1651 aa24.19■■□□□ 1.46
CMTM3-208ENST00000564247 SLAIN2Q9P270 581 aa24.17■■□□□ 1.46
CMTM3-208ENST00000564247 PRAG1Q86YV5 1406 aa24.16■■□□□ 1.46
CMTM3-208ENST00000564247 CADPS2Q86UW7 1296 aa24.15■■□□□ 1.46
CMTM3-208ENST00000564247 PTCH1Q13635 1447 aa24.15■■□□□ 1.46
CMTM3-208ENST00000564247 PIK3C2GO75747 1445 aa24.14■■□□□ 1.45
CMTM3-208ENST00000564247 ATF3P18847 181 aa24.14■■□□□ 1.45
CMTM3-208ENST00000564247 DCCP43146 1447 aa24.14■■□□□ 1.45
CMTM3-208ENST00000564247 MYOM2P54296 1465 aa24.12■■□□□ 1.45
CMTM3-208ENST00000564247 DISP3Q9P2K9 1392 aa24.11■■□□□ 1.45
CMTM3-208ENST00000564247 NRXN1Q9ULB1 1477 aa24.11■■□□□ 1.45
CMTM3-208ENST00000564247 ADGRL3Q9HAR2 1447 aa24.1■■□□□ 1.45
CMTM3-208ENST00000564247 NALCNQ8IZF0 1738 aa24.1■■□□□ 1.45
CMTM3-208ENST00000564247 ROBO2Q9HCK4 1378 aa24.09■■□□□ 1.45
CMTM3-208ENST00000564247 NBPF8Q3BBV2 869 aa24.08■■□□□ 1.45
CMTM3-208ENST00000564247 ASXL1Q8IXJ9 1541 aa24.06■■□□□ 1.44
CMTM3-208ENST00000564247 LAMC1P11047 1609 aa24.06■■□□□ 1.44
CMTM3-208ENST00000564247 TECPR2O15040 1411 aa24.05■■□□□ 1.44
CMTM3-208ENST00000564247 C14orf93Q9H972 538 aaKnown RBP24.05■■□□□ 1.44
CMTM3-208ENST00000564247 PHLPP1O60346 1717 aa24.04■■□□□ 1.44
CMTM3-208ENST00000564247 MED1Q15648 1581 aaPredicted RBP24.04■■□□□ 1.44
CMTM3-208ENST00000564247 KNDC1Q76NI1 1749 aa24.04■■□□□ 1.44
CMTM3-208ENST00000564247 LRPPRCP42704 1394 aaKnown RBP24.03■■□□□ 1.44
CMTM3-208ENST00000564247 MST1RQ04912 1400 aa24.03■■□□□ 1.44
CMTM3-208ENST00000564247 TMEM132EQ6IEE7 984 aa24.02■■□□□ 1.44
CMTM3-208ENST00000564247 ABCC11Q96J66 1382 aa24.02■■□□□ 1.44
CMTM3-208ENST00000564247 YTHDC2Q9H6S0 1430 aaKnown RBP24■■□□□ 1.43
CMTM3-208ENST00000564247 AHDC1Q5TGY3 1603 aaPredicted RBP23.99■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms