RNA–Protein interactions for RNA: ENST00000563854.1

NME3-205, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 5

Gene NME3, Length 583 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-205ENST00000563854 TMEM131LA2VDJ0 1609 aa26.82■■□□□ 1.88
NME3-205ENST00000563854 ILDR2Q71H61 639 aa26.81■■□□□ 1.88
NME3-205ENST00000563854 RIMS2Q9UQ26 1411 aa26.81■■□□□ 1.88
NME3-205ENST00000563854 ZFYVE9O95405 1425 aa26.78■■□□□ 1.88
NME3-205ENST00000563854 ALKQ9UM73 1620 aa26.78■■□□□ 1.88
NME3-205ENST00000563854 HSPA1LP34931 641 aa26.77■■□□□ 1.88
NME3-205ENST00000563854 NAIPQ13075 1403 aa26.75■■□□□ 1.87
NME3-205ENST00000563854 NUTM2DQ5VT03 806 aaPredicted RBP26.74■■□□□ 1.87
NME3-205ENST00000563854 PLEKHG1Q9ULL1 1385 aa26.73■■□□□ 1.87
NME3-205ENST00000563854 HDGFP51858 240 aaKnown RBP26.73■■□□□ 1.87
NME3-205ENST00000563854 XIRP1Q702N8 1843 aaKnown RBP26.73■■□□□ 1.87
NME3-205ENST00000563854 SPHKAPQ2M3C7 1700 aa26.73■■□□□ 1.87
NME3-205ENST00000563854 KCNA6P17658 529 aa26.71■■□□□ 1.87
NME3-205ENST00000563854 TMEM94Q12767 1356 aa26.7■■□□□ 1.86
NME3-205ENST00000563854 PROSER2Q86WR7 435 aaPredicted RBP26.69■■□□□ 1.86
NME3-205ENST00000563854 ABCF1Q8NE71 845 aaKnown RBP eCLIP26.69■■□□□ 1.86
NME3-205ENST00000563854 RBM33Q96EV2 1170 aaKnown RBP26.69■■□□□ 1.86
NME3-205ENST00000563854 NWD1Q149M9 1564 aa26.67■■□□□ 1.86
NME3-205ENST00000563854 TRIM52Q96A61 297 aa26.67■■□□□ 1.86
NME3-205ENST00000563854 HFM1A2PYH4 1435 aa26.66■■□□□ 1.86
NME3-205ENST00000563854 NKTRP30414 1462 aaKnown RBP26.66■■□□□ 1.86
NME3-205ENST00000563854 ZNF326Q5BKZ1 582 aaKnown RBP26.62■■□□□ 1.85
NME3-205ENST00000563854 SOCS7O14512 581 aa26.61■■□□□ 1.85
NME3-205ENST00000563854 CLTCL1P53675 1640 aa26.61■■□□□ 1.85
NME3-205ENST00000563854 CHD2O14647 1828 aaKnown RBP26.6■■□□□ 1.85
NME3-205ENST00000563854 ADAMTS13Q76LX8 1427 aa26.59■■□□□ 1.85
NME3-205ENST00000563854 TRPM2O94759 1503 aa26.59■■□□□ 1.85
NME3-205ENST00000563854 DIP2AQ14689 1571 aa26.58■■□□□ 1.85
NME3-205ENST00000563854 TBX22Q9Y458 520 aa26.58■■□□□ 1.85
NME3-205ENST00000563854 MED1Q15648 1581 aaPredicted RBP26.57■■□□□ 1.84
NME3-205ENST00000563854 MSH6P52701 1360 aa26.56■■□□□ 1.84
NME3-205ENST00000563854 SLC4A1APQ9BWU0 796 aaKnown RBP26.55■■□□□ 1.84
NME3-205ENST00000563854 C14orf37Q86TY3 774 aa26.52■■□□□ 1.84
NME3-205ENST00000563854 KIF1BO60333 1816 aa26.51■■□□□ 1.83
NME3-205ENST00000563854 ROBO1Q9Y6N7 1651 aa26.5■■□□□ 1.83
NME3-205ENST00000563854 NRXN3Q9Y4C0 1643 aa26.49■■□□□ 1.83
NME3-205ENST00000563854 FAM135BQ49AJ0 1406 aa26.48■■□□□ 1.83
NME3-205ENST00000563854 PIK3R4Q99570 1358 aa26.48■■□□□ 1.83
NME3-205ENST00000563854 SETBP1Q9Y6X0 1596 aa26.48■■□□□ 1.83
NME3-205ENST00000563854 NEXMIFQ5QGS0 1516 aa26.48■■□□□ 1.83
NME3-205ENST00000563854 PTPRUQ92729 1446 aa26.46■■□□□ 1.83
NME3-205ENST00000563854 FOXD1Q16676 465 aa26.45■■□□□ 1.82
NME3-205ENST00000563854 AMOTL2Q9Y2J4 779 aa26.45■■□□□ 1.82
NME3-205ENST00000563854 PHF23Q9BUL5 403 aaPredicted RBP26.44■■□□□ 1.82
NME3-205ENST00000563854 SLAIN2Q9P270 581 aa26.41■■□□□ 1.82
NME3-205ENST00000563854 NCOA3Q9Y6Q9 1424 aa26.39■■□□□ 1.82
NME3-205ENST00000563854 XRN1Q8IZH2 1706 aaKnown RBP26.39■■□□□ 1.82
NME3-205ENST00000563854 METP08581 1390 aa26.39■■□□□ 1.82
NME3-205ENST00000563854 SIPA1L2Q9P2F8 1722 aaPredicted RBP26.38■■□□□ 1.81
NME3-205ENST00000563854 ATF3P18847 181 aa26.37■■□□□ 1.81
NME3-205ENST00000563854 PHLPP1O60346 1717 aa26.35■■□□□ 1.81
NME3-205ENST00000563854 C19orf44Q9H6X5 657 aa26.35■■□□□ 1.81
NME3-205ENST00000563854 CADPS2Q86UW7 1296 aa26.34■■□□□ 1.81
NME3-205ENST00000563854 MPHOSPH9Q99550 1183 aa26.34■■□□□ 1.81
NME3-205ENST00000563854 CCDC144AA2RUR9 1427 aa26.33■■□□□ 1.81
NME3-205ENST00000563854 VGFO15240 615 aaPredicted RBP26.33■■□□□ 1.81
NME3-205ENST00000563854 SETD5Q9C0A6 1442 aa26.31■■□□□ 1.8
NME3-205ENST00000563854 PPLO60437 1756 aa26.31■■□□□ 1.8
NME3-205ENST00000563854 RPGRIP1LQ68CZ1 1315 aa26.3■■□□□ 1.8
NME3-205ENST00000563854 RGL3Q3MIN7 710 aa26.27■■□□□ 1.8
NME3-205ENST00000563854 SETD1AO15047 1707 aaKnown RBP26.26■■□□□ 1.79
NME3-205ENST00000563854 DCCP43146 1447 aa26.25■■□□□ 1.79
NME3-205ENST00000563854 COL16A1Q07092 1604 aaPredicted RBP26.24■■□□□ 1.79
NME3-205ENST00000563854 RAB3GAP2Q9H2M9 1393 aa26.23■■□□□ 1.79
NME3-205ENST00000563854 NALCNQ8IZF0 1738 aa26.23■■□□□ 1.79
NME3-205ENST00000563854 ADGRL3Q9HAR2 1447 aa26.22■■□□□ 1.79
NME3-205ENST00000563854 JCADQ9P266 1359 aa26.21■■□□□ 1.79
NME3-205ENST00000563854 SPATA31E1Q6ZUB1 1445 aa26.21■■□□□ 1.79
NME3-205ENST00000563854 AHDC1Q5TGY3 1603 aaPredicted RBP26.2■■□□□ 1.78
NME3-205ENST00000563854 ADGRF5Q8IZF2 1346 aa26.19■■□□□ 1.78
NME3-205ENST00000563854 ACIN1Q9UKV3 1341 aaKnown RBP26.19■■□□□ 1.78
NME3-205ENST00000563854 BRINP3Q76B58 766 aa26.19■■□□□ 1.78
NME3-205ENST00000563854 MST1RQ04912 1400 aa26.19■■□□□ 1.78
NME3-205ENST00000563854 PTCH1Q13635 1447 aa26.19■■□□□ 1.78
NME3-205ENST00000563854 ROBO2Q9HCK4 1378 aa26.19■■□□□ 1.78
NME3-205ENST00000563854 ASXL1Q8IXJ9 1541 aa26.18■■□□□ 1.78
NME3-205ENST00000563854 IFT172Q9UG01 1749 aa26.17■■□□□ 1.78
NME3-205ENST00000563854 ANKRD30BQ9BXX2 1392 aa26.15■■□□□ 1.78
NME3-205ENST00000563854 RGS17Q9UGC6 210 aaPredicted RBP26.14■■□□□ 1.78
NME3-205ENST00000563854 STK26Q9P289 416 aa26.11■■□□□ 1.77
NME3-205ENST00000563854 PRAG1Q86YV5 1406 aa26.09■■□□□ 1.77
NME3-205ENST00000563854 NHSL1Q5SYE7 1610 aa26.09■■□□□ 1.77
NME3-205ENST00000563854 SHPRHQ149N8 1683 aa26.09■■□□□ 1.77
NME3-205ENST00000563854 MEX3CQ5U5Q3 659 aaKnown RBP26.08■■□□□ 1.77
NME3-205ENST00000563854 DDX17Q92841 729 aaKnown RBP26.08■■□□□ 1.77
NME3-205ENST00000563854 LRP6O75581 1613 aa26.07■■□□□ 1.76
NME3-205ENST00000563854 PIK3C2GO75747 1445 aa26.07■■□□□ 1.76
NME3-205ENST00000563854 C1orf167Q5SNV9 1468 aa26.07■■□□□ 1.76
NME3-205ENST00000563854 SPATA31A6Q5VVP1 1343 aa26.07■■□□□ 1.76
NME3-205ENST00000563854 TMEM132EQ6IEE7 984 aa26.06■■□□□ 1.76
NME3-205ENST00000563854 POTEAQ6S8J7 498 aa26.04■■□□□ 1.76
NME3-205ENST00000563854 NUTM2BA6NNL0 878 aaPredicted RBP26.03■■□□□ 1.76
NME3-205ENST00000563854 NUTM2EB1AL46 878 aaPredicted RBP26.03■■□□□ 1.76
NME3-205ENST00000563854 NUTM2AQ8IVF1 878 aaPredicted RBP26.03■■□□□ 1.76
NME3-205ENST00000563854 LRPPRCP42704 1394 aaKnown RBP26.03■■□□□ 1.76
NME3-205ENST00000563854 MYOM2P54296 1465 aa26■■□□□ 1.75
NME3-205ENST00000563854 WAPLQ7Z5K2 1190 aa26■■□□□ 1.75
NME3-205ENST00000563854 ORAI2Q96SN7 254 aa26■■□□□ 1.75
NME3-205ENST00000563854 KNDC1Q76NI1 1749 aa26■■□□□ 1.75
NME3-205ENST00000563854 CDC42BPGQ6DT37 1551 aa25.99■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms