RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 ITGAEP38570 1179 aa26.3■■□□□ 1.8
VPS9D1-203ENST00000563798 HDGFP51858 240 aaKnown RBP26.29■■□□□ 1.8
VPS9D1-203ENST00000563798 XIRP1Q702N8 1843 aaKnown RBP26.29■■□□□ 1.8
VPS9D1-203ENST00000563798 PLEKHG1Q9ULL1 1385 aa26.29■■□□□ 1.8
VPS9D1-203ENST00000563798 SLC26A8Q96RN1 970 aa26.28■■□□□ 1.8
VPS9D1-203ENST00000563798 RIMS2Q9UQ26 1411 aa26.27■■□□□ 1.8
VPS9D1-203ENST00000563798 NWD1Q149M9 1564 aa26.26■■□□□ 1.79
VPS9D1-203ENST00000563798 MYO5BQ9ULV0 1848 aa26.25■■□□□ 1.79
VPS9D1-203ENST00000563798 NKTRP30414 1462 aaKnown RBP26.23■■□□□ 1.79
VPS9D1-203ENST00000563798 TMEM94Q12767 1356 aa26.23■■□□□ 1.79
VPS9D1-203ENST00000563798 ABCF1Q8NE71 845 aaKnown RBP eCLIP26.23■■□□□ 1.79
VPS9D1-203ENST00000563798 TBX22Q9Y458 520 aa26.2■■□□□ 1.78
VPS9D1-203ENST00000563798 PPP1R15AO75807 674 aaPredicted RBP26.18■■□□□ 1.78
VPS9D1-203ENST00000563798 PROSER2Q86WR7 435 aaPredicted RBP26.18■■□□□ 1.78
VPS9D1-203ENST00000563798 NAIPQ13075 1403 aa26.17■■□□□ 1.78
VPS9D1-203ENST00000563798 FAM135BQ49AJ0 1406 aa26.17■■□□□ 1.78
VPS9D1-203ENST00000563798 BCANQ96GW7 911 aa26.17■■□□□ 1.78
VPS9D1-203ENST00000563798 MED1Q15648 1581 aaPredicted RBP26.16■■□□□ 1.78
VPS9D1-203ENST00000563798 CHGAP10645 457 aaKnown RBP26.16■■□□□ 1.78
VPS9D1-203ENST00000563798 CHD2O14647 1828 aaKnown RBP26.15■■□□□ 1.78
VPS9D1-203ENST00000563798 ADAMTS13Q76LX8 1427 aa26.14■■□□□ 1.78
VPS9D1-203ENST00000563798 DIP2AQ14689 1571 aa26.12■■□□□ 1.77
VPS9D1-203ENST00000563798 PIK3R4Q99570 1358 aa26.12■■□□□ 1.77
VPS9D1-203ENST00000563798 SPHKAPQ2M3C7 1700 aa26.11■■□□□ 1.77
VPS9D1-203ENST00000563798 NCOA3Q9Y6Q9 1424 aa26.11■■□□□ 1.77
VPS9D1-203ENST00000563798 HFM1A2PYH4 1435 aa26.09■■□□□ 1.77
VPS9D1-203ENST00000563798 RBM33Q96EV2 1170 aaKnown RBP26.08■■□□□ 1.77
VPS9D1-203ENST00000563798 MSH6P52701 1360 aa26.07■■□□□ 1.76
VPS9D1-203ENST00000563798 NUTM2DQ5VT03 806 aaPredicted RBP26.06■■□□□ 1.76
VPS9D1-203ENST00000563798 SENP3Q9H4L4 574 aaPredicted RBP26.05■■□□□ 1.76
VPS9D1-203ENST00000563798 TRPM2O94759 1503 aa26.04■■□□□ 1.76
VPS9D1-203ENST00000563798 SETBP1Q9Y6X0 1596 aa26.02■■□□□ 1.76
VPS9D1-203ENST00000563798 ROBO1Q9Y6N7 1651 aa26.01■■□□□ 1.75
VPS9D1-203ENST00000563798 CLTCL1P53675 1640 aa26■■□□□ 1.75
VPS9D1-203ENST00000563798 SLAIN2Q9P270 581 aa26■■□□□ 1.75
VPS9D1-203ENST00000563798 NRXN3Q9Y4C0 1643 aa25.99■■□□□ 1.75
VPS9D1-203ENST00000563798 PTPRUQ92729 1446 aa25.97■■□□□ 1.75
VPS9D1-203ENST00000563798 AMOTL2Q9Y2J4 779 aa25.96■■□□□ 1.75
VPS9D1-203ENST00000563798 NEXMIFQ5QGS0 1516 aa25.95■■□□□ 1.74
VPS9D1-203ENST00000563798 ZNF326Q5BKZ1 582 aaKnown RBP25.95■■□□□ 1.74
VPS9D1-203ENST00000563798 C19orf44Q9H6X5 657 aa25.95■■□□□ 1.74
VPS9D1-203ENST00000563798 PHF23Q9BUL5 403 aaPredicted RBP25.94■■□□□ 1.74
VPS9D1-203ENST00000563798 TRIM52Q96A61 297 aa25.93■■□□□ 1.74
VPS9D1-203ENST00000563798 XRN1Q8IZH2 1706 aaKnown RBP25.92■■□□□ 1.74
VPS9D1-203ENST00000563798 CADPS2Q86UW7 1296 aa25.91■■□□□ 1.74
VPS9D1-203ENST00000563798 SLC4A1APQ9BWU0 796 aaKnown RBP25.91■■□□□ 1.74
VPS9D1-203ENST00000563798 KIF1BO60333 1816 aa25.91■■□□□ 1.74
VPS9D1-203ENST00000563798 SIPA1L2Q9P2F8 1722 aaPredicted RBP25.9■■□□□ 1.74
VPS9D1-203ENST00000563798 METP08581 1390 aa25.89■■□□□ 1.74
VPS9D1-203ENST00000563798 C14orf37Q86TY3 774 aa25.88■■□□□ 1.73
VPS9D1-203ENST00000563798 DCCP43146 1447 aa25.88■■□□□ 1.73
VPS9D1-203ENST00000563798 RPGRIP1LQ68CZ1 1315 aa25.87■■□□□ 1.73
VPS9D1-203ENST00000563798 ATF3P18847 181 aa25.86■■□□□ 1.73
VPS9D1-203ENST00000563798 VGFO15240 615 aaPredicted RBP25.85■■□□□ 1.73
VPS9D1-203ENST00000563798 PHLPP1O60346 1717 aa25.84■■□□□ 1.73
VPS9D1-203ENST00000563798 RGS17Q9UGC6 210 aaPredicted RBP25.84■■□□□ 1.73
VPS9D1-203ENST00000563798 JCADQ9P266 1359 aa25.82■■□□□ 1.72
VPS9D1-203ENST00000563798 COL16A1Q07092 1604 aaPredicted RBP25.81■■□□□ 1.72
VPS9D1-203ENST00000563798 AHDC1Q5TGY3 1603 aaPredicted RBP25.81■■□□□ 1.72
VPS9D1-203ENST00000563798 ACIN1Q9UKV3 1341 aaKnown RBP25.79■■□□□ 1.72
VPS9D1-203ENST00000563798 PRAG1Q86YV5 1406 aa25.79■■□□□ 1.72
VPS9D1-203ENST00000563798 SETD1AO15047 1707 aaKnown RBP25.77■■□□□ 1.72
VPS9D1-203ENST00000563798 BRINP3Q76B58 766 aa25.76■■□□□ 1.71
VPS9D1-203ENST00000563798 ADGRL3Q9HAR2 1447 aa25.76■■□□□ 1.71
VPS9D1-203ENST00000563798 MST1RQ04912 1400 aa25.75■■□□□ 1.71
VPS9D1-203ENST00000563798 PTCH1Q13635 1447 aa25.75■■□□□ 1.71
VPS9D1-203ENST00000563798 MPHOSPH9Q99550 1183 aa25.75■■□□□ 1.71
VPS9D1-203ENST00000563798 PPLO60437 1756 aa25.74■■□□□ 1.71
VPS9D1-203ENST00000563798 FOXD1Q16676 465 aa25.73■■□□□ 1.71
VPS9D1-203ENST00000563798 CCDC144AA2RUR9 1427 aa25.72■■□□□ 1.71
VPS9D1-203ENST00000563798 SPATA31A6Q5VVP1 1343 aa25.72■■□□□ 1.71
VPS9D1-203ENST00000563798 SPATA31E1Q6ZUB1 1445 aa25.71■■□□□ 1.71
VPS9D1-203ENST00000563798 ASXL1Q8IXJ9 1541 aa25.7■■□□□ 1.7
VPS9D1-203ENST00000563798 ROBO2Q9HCK4 1378 aa25.69■■□□□ 1.7
VPS9D1-203ENST00000563798 NALCNQ8IZF0 1738 aa25.68■■□□□ 1.7
VPS9D1-203ENST00000563798 SHPRHQ149N8 1683 aa25.68■■□□□ 1.7
VPS9D1-203ENST00000563798 POTEAQ6S8J7 498 aa25.67■■□□□ 1.7
VPS9D1-203ENST00000563798 SETD5Q9C0A6 1442 aa25.67■■□□□ 1.7
VPS9D1-203ENST00000563798 ANKRD30BQ9BXX2 1392 aa25.66■■□□□ 1.7
VPS9D1-203ENST00000563798 NHSL1Q5SYE7 1610 aa25.65■■□□□ 1.7
VPS9D1-203ENST00000563798 ADGRF5Q8IZF2 1346 aa25.63■■□□□ 1.69
VPS9D1-203ENST00000563798 LRP6O75581 1613 aa25.63■■□□□ 1.69
VPS9D1-203ENST00000563798 IFT172Q9UG01 1749 aa25.62■■□□□ 1.69
VPS9D1-203ENST00000563798 C1orf167Q5SNV9 1468 aa25.6■■□□□ 1.69
VPS9D1-203ENST00000563798 RGL3Q3MIN7 710 aa25.6■■□□□ 1.69
VPS9D1-203ENST00000563798 LAMC1P11047 1609 aa25.59■■□□□ 1.69
VPS9D1-203ENST00000563798 TECPR2O15040 1411 aa25.58■■□□□ 1.69
VPS9D1-203ENST00000563798 LRRC59Q96AG4 307 aaKnown RBP25.58■■□□□ 1.69
VPS9D1-203ENST00000563798 PIK3C2GO75747 1445 aa25.56■■□□□ 1.68
VPS9D1-203ENST00000563798 RAB3GAP2Q9H2M9 1393 aa25.56■■□□□ 1.68
VPS9D1-203ENST00000563798 LRPPRCP42704 1394 aaKnown RBP25.55■■□□□ 1.68
VPS9D1-203ENST00000563798 ABCC11Q96J66 1382 aa25.54■■□□□ 1.68
VPS9D1-203ENST00000563798 ZNF772Q68DY9 489 aaPredicted RBP25.52■■□□□ 1.68
VPS9D1-203ENST00000563798 CDC42BPGQ6DT37 1551 aa25.52■■□□□ 1.68
VPS9D1-203ENST00000563798 MEX3CQ5U5Q3 659 aaKnown RBP25.51■■□□□ 1.67
VPS9D1-203ENST00000563798 NRXN1Q9ULB1 1477 aa25.51■■□□□ 1.67
VPS9D1-203ENST00000563798 SOS2Q07890 1332 aaPredicted RBP25.5■■□□□ 1.67
VPS9D1-203ENST00000563798 PNPLA6Q8IY17 1366 aa25.5■■□□□ 1.67
VPS9D1-203ENST00000563798 DDX17Q92841 729 aaKnown RBP25.5■■□□□ 1.67
VPS9D1-203ENST00000563798 ORAI2Q96SN7 254 aa25.5■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms