RNA–Protein interactions for RNA: ENST00000563455.1

SMPD3-205, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 4

Gene SMPD3, Length 546 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-205ENST00000563455 POLR1AO95602 1720 aaPredicted RBP19.54■□□□□ 0.72
SMPD3-205ENST00000563455 TRPM2O94759 1503 aa19.52■□□□□ 0.72
SMPD3-205ENST00000563455 SLC52A1Q9NWF4 448 aa19.52■□□□□ 0.72
SMPD3-205ENST00000563455 MROH1Q8NDA8 1641 aa19.51■□□□□ 0.71
SMPD3-205ENST00000563455 SOCS7O14512 581 aa19.51■□□□□ 0.71
SMPD3-205ENST00000563455 HDGFP51858 240 aaKnown RBP19.51■□□□□ 0.71
SMPD3-205ENST00000563455 SCAF11Q99590 1463 aaKnown RBP19.51■□□□□ 0.71
SMPD3-205ENST00000563455 LTKP29376 864 aa19.49■□□□□ 0.71
SMPD3-205ENST00000563455 IDI1Q13907 227 aa19.49■□□□□ 0.71
SMPD3-205ENST00000563455 EFCAB6Q5THR3 1501 aa19.48■□□□□ 0.71
SMPD3-205ENST00000563455 HSPA1LP34931 641 aa19.48■□□□□ 0.71
SMPD3-205ENST00000563455 ILDR2Q71H61 639 aa19.48■□□□□ 0.71
SMPD3-205ENST00000563455 TMEM2Q9UHN6 1383 aa19.47■□□□□ 0.71
SMPD3-205ENST00000563455 IQGAP1P46940 1657 aa19.46■□□□□ 0.71
SMPD3-205ENST00000563455 SLIT1O75093 1534 aa19.46■□□□□ 0.71
SMPD3-205ENST00000563455 ARHGAP23Q9P227 1491 aa19.46■□□□□ 0.71
SMPD3-205ENST00000563455 DCAF11Q8TEB1 546 aa19.45■□□□□ 0.7
SMPD3-205ENST00000563455 E9PCH4 1651 aa19.45■□□□□ 0.7
SMPD3-205ENST00000563455 RALGAPBQ86X10 1494 aa19.44■□□□□ 0.7
SMPD3-205ENST00000563455 NBPF8Q3BBV2 869 aa19.44■□□□□ 0.7
SMPD3-205ENST00000563455 CEP152O94986 1710 aa19.44■□□□□ 0.7
SMPD3-205ENST00000563455 BCANQ96GW7 911 aa19.43■□□□□ 0.7
SMPD3-205ENST00000563455 SPATA31E1Q6ZUB1 1445 aa19.42■□□□□ 0.7
SMPD3-205ENST00000563455 SPHKAPQ2M3C7 1700 aa19.42■□□□□ 0.7
SMPD3-205ENST00000563455 UBR1Q8IWV7 1749 aa19.42■□□□□ 0.7
SMPD3-205ENST00000563455 LRRC7Q96NW7 1537 aa19.41■□□□□ 0.7
SMPD3-205ENST00000563455 KCNA6P17658 529 aa19.41■□□□□ 0.7
SMPD3-205ENST00000563455 HSPA5P11021 654 aaKnown RBP19.39■□□□□ 0.69
SMPD3-205ENST00000563455 RPGRIP1LQ68CZ1 1315 aa19.39■□□□□ 0.69
SMPD3-205ENST00000563455 NOS1P29475 1434 aa19.39■□□□□ 0.69
SMPD3-205ENST00000563455 PRAG1Q86YV5 1406 aa19.39■□□□□ 0.69
SMPD3-205ENST00000563455 SLC24A1O60721 1099 aa19.38■□□□□ 0.69
SMPD3-205ENST00000563455 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.38■□□□□ 0.69
SMPD3-205ENST00000563455 GPRASP1Q5JY77 1395 aa19.37■□□□□ 0.69
SMPD3-205ENST00000563455 CFAP65Q6ZU64 1925 aaKnown RBP19.37■□□□□ 0.69
SMPD3-205ENST00000563455 SYNMO15061 1565 aa19.36■□□□□ 0.69
SMPD3-205ENST00000563455 RGL3Q3MIN7 710 aa19.35■□□□□ 0.69
SMPD3-205ENST00000563455 PROSER2Q86WR7 435 aaPredicted RBP19.35■□□□□ 0.69
SMPD3-205ENST00000563455 SLC26A8Q96RN1 970 aa19.35■□□□□ 0.69
SMPD3-205ENST00000563455 PHF23Q9BUL5 403 aaPredicted RBP19.35■□□□□ 0.69
SMPD3-205ENST00000563455 CARD11Q9BXL7 1154 aa19.35■□□□□ 0.69
SMPD3-205ENST00000563455 KDM2AQ9Y2K7 1162 aa19.35■□□□□ 0.69
SMPD3-205ENST00000563455 KDM5AP29375 1690 aaKnown RBP19.35■□□□□ 0.69
SMPD3-205ENST00000563455 PIK3C2BO00750 1634 aa19.34■□□□□ 0.69
SMPD3-205ENST00000563455 ROCK2O75116 1388 aaKnown RBP19.33■□□□□ 0.69
SMPD3-205ENST00000563455 ZNF326Q5BKZ1 582 aaKnown RBP19.33■□□□□ 0.68
SMPD3-205ENST00000563455 USP47Q96K76 1375 aa19.32■□□□□ 0.68
SMPD3-205ENST00000563455 CHGAP10645 457 aaKnown RBP19.31■□□□□ 0.68
SMPD3-205ENST00000563455 LAMC1P11047 1609 aa19.31■□□□□ 0.68
SMPD3-205ENST00000563455 MYOM2P54296 1465 aa19.3■□□□□ 0.68
SMPD3-205ENST00000563455 CLTCL1P53675 1640 aa19.3■□□□□ 0.68
SMPD3-205ENST00000563455 TMEM94Q12767 1356 aa19.3■□□□□ 0.68
SMPD3-205ENST00000563455 TBX22Q9Y458 520 aa19.29■□□□□ 0.68
SMPD3-205ENST00000563455 FAM135BQ49AJ0 1406 aa19.28■□□□□ 0.68
SMPD3-205ENST00000563455 ADGRB3O60242 1522 aa19.28■□□□□ 0.68
SMPD3-205ENST00000563455 DDX10Q13206 875 aaKnown RBP19.27■□□□□ 0.68
SMPD3-205ENST00000563455 SENP3Q9H4L4 574 aaPredicted RBP19.27■□□□□ 0.68
SMPD3-205ENST00000563455 PLEKHG1Q9ULL1 1385 aa19.27■□□□□ 0.68
SMPD3-205ENST00000563455 KIF1BO60333 1816 aa19.25■□□□□ 0.67
SMPD3-205ENST00000563455 MIER1Q8N108 512 aa19.25■□□□□ 0.67
SMPD3-205ENST00000563455 TRPM1Q7Z4N2 1603 aa19.25■□□□□ 0.67
SMPD3-205ENST00000563455 RIMS2Q9UQ26 1411 aa19.25■□□□□ 0.67
SMPD3-205ENST00000563455 MSH6P52701 1360 aa19.24■□□□□ 0.67
SMPD3-205ENST00000563455 CCDC7Q96M83 1385 aa19.24■□□□□ 0.67
SMPD3-205ENST00000563455 STRCP1A6NGW2 1772 aa19.24■□□□□ 0.67
SMPD3-205ENST00000563455 WASHC2AQ641Q2 1341 aa19.24■□□□□ 0.67
SMPD3-205ENST00000563455 VGFO15240 615 aaPredicted RBP19.23■□□□□ 0.67
SMPD3-205ENST00000563455 ANP32CO43423 234 aa19.23■□□□□ 0.67
SMPD3-205ENST00000563455 NKTRP30414 1462 aaKnown RBP19.22■□□□□ 0.67
SMPD3-205ENST00000563455 ALKQ9UM73 1620 aa19.22■□□□□ 0.67
SMPD3-205ENST00000563455 MED1Q15648 1581 aaPredicted RBP19.22■□□□□ 0.67
SMPD3-205ENST00000563455 KIAA1210Q9ULL0 1709 aa19.22■□□□□ 0.67
SMPD3-205ENST00000563455 EIF3AQ14152 1382 aaKnown RBP19.21■□□□□ 0.67
SMPD3-205ENST00000563455 ZFYVE9O95405 1425 aa19.21■□□□□ 0.67
SMPD3-205ENST00000563455 HIRIP3Q9BW71 556 aaPredicted RBP19.21■□□□□ 0.67
SMPD3-205ENST00000563455 SLAIN2Q9P270 581 aa19.21■□□□□ 0.67
SMPD3-205ENST00000563455 NCOA3Q9Y6Q9 1424 aa19.21■□□□□ 0.67
SMPD3-205ENST00000563455 NRXN1Q9ULB1 1477 aa19.21■□□□□ 0.67
SMPD3-205ENST00000563455 C14orf37Q86TY3 774 aa19.2■□□□□ 0.66
SMPD3-205ENST00000563455 PIK3R4Q99570 1358 aa19.19■□□□□ 0.66
SMPD3-205ENST00000563455 CCER2I3L3R5 266 aa19.19■□□□□ 0.66
SMPD3-205ENST00000563455 CDCA8Q53HL2 280 aa19.19■□□□□ 0.66
SMPD3-205ENST00000563455 RBM33Q96EV2 1170 aaKnown RBP19.17■□□□□ 0.66
SMPD3-205ENST00000563455 ST20-MTHFSA0A0A6YYL1 179 aa19.16■□□□□ 0.66
SMPD3-205ENST00000563455 CADPS2Q86UW7 1296 aa19.16■□□□□ 0.66
SMPD3-205ENST00000563455 C19orf44Q9H6X5 657 aa19.16■□□□□ 0.66
SMPD3-205ENST00000563455 KIF7Q2M1P5 1343 aa19.16■□□□□ 0.66
SMPD3-205ENST00000563455 CENPBP07199 599 aaPredicted RBP19.15■□□□□ 0.66
SMPD3-205ENST00000563455 ATF3P18847 181 aa19.15■□□□□ 0.66
SMPD3-205ENST00000563455 NBPF1Q3BBV0 1214 aa19.14■□□□□ 0.65
SMPD3-205ENST00000563455 NUTM2DQ5VT03 806 aaPredicted RBP19.14■□□□□ 0.65
SMPD3-205ENST00000563455 TMEM131LA2VDJ0 1609 aa19.14■□□□□ 0.65
SMPD3-205ENST00000563455 TMF1P82094 1093 aa19.13■□□□□ 0.65
SMPD3-205ENST00000563455 C14orf93Q9H972 538 aaKnown RBP19.13■□□□□ 0.65
SMPD3-205ENST00000563455 NWD1Q149M9 1564 aa19.12■□□□□ 0.65
SMPD3-205ENST00000563455 SETBP1Q9Y6X0 1596 aa19.12■□□□□ 0.65
SMPD3-205ENST00000563455 AMOTL2Q9Y2J4 779 aa19.12■□□□□ 0.65
SMPD3-205ENST00000563455 IFT172Q9UG01 1749 aa19.11■□□□□ 0.65
SMPD3-205ENST00000563455 PIK3C2GO75747 1445 aa19.1■□□□□ 0.65
SMPD3-205ENST00000563455 DIP2AQ14689 1571 aa19.09■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms