RNA–Protein interactions for RNA: ENST00000563410.1

CHD9-208, Transcript of chromodomain helicase DNA binding protein 9, human

TSL 2

Gene CHD9, Length 488 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD9-208	ENST00000563410	KCNA6	P17658	529 aa		32.24	■■■□□ 2.75
CHD9-208	ENST00000563410	NWD1	Q149M9	1564 aa		32.22	■■■□□ 2.75
CHD9-208	ENST00000563410	TMEM94	Q12767	1356 aa		32.2	■■■□□ 2.75
CHD9-208	ENST00000563410	PPARGC1B	Q86YN6	1023 aa	Known RBP	32.2	■■■□□ 2.75
CHD9-208	ENST00000563410	SENP3	Q9H4L4	574 aa	Predicted RBP	32.2	■■■□□ 2.75
CHD9-208	ENST00000563410	RIMS2	Q9UQ26	1411 aa		32.17	■■■□□ 2.74
CHD9-208	ENST00000563410	CHD2	O14647	1828 aa	Known RBP	32.16	■■■□□ 2.74
CHD9-208	ENST00000563410	ITGAE	P38570	1179 aa		32.16	■■■□□ 2.74
CHD9-208	ENST00000563410	PLEKHG1	Q9ULL1	1385 aa		32.16	■■■□□ 2.74
CHD9-208	ENST00000563410	NKTR	P30414	1462 aa	Known RBP	32.15	■■■□□ 2.74
CHD9-208	ENST00000563410	PROSER2	Q86WR7	435 aa	Predicted RBP	32.13	■■■□□ 2.73
CHD9-208	ENST00000563410	NUP155	O75694	1391 aa		32.12	■■■□□ 2.73
CHD9-208	ENST00000563410	RBM33	Q96EV2	1170 aa	Known RBP	32.12	■■■□□ 2.73
CHD9-208	ENST00000563410	BCAN	Q96GW7	911 aa		32.12	■■■□□ 2.73
CHD9-208	ENST00000563410	FAM135B	Q49AJ0	1406 aa		32.1	■■■□□ 2.73
CHD9-208	ENST00000563410	PPP1R15A	O75807	674 aa	Predicted RBP	32.08	■■■□□ 2.73
CHD9-208	ENST00000563410	CHGA	P10645	457 aa	Known RBP	32.08	■■■□□ 2.73
CHD9-208	ENST00000563410	HDGF	P51858	240 aa	Known RBP	32.08	■■■□□ 2.73
CHD9-208	ENST00000563410	ROBO1	Q9Y6N7	1651 aa		32.06	■■■□□ 2.72
CHD9-208	ENST00000563410	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	32.04	■■■□□ 2.72
CHD9-208	ENST00000563410	TBX22	Q9Y458	520 aa		32.03	■■■□□ 2.72
CHD9-208	ENST00000563410	ADAMTS13	Q76LX8	1427 aa		32.02	■■■□□ 2.72
CHD9-208	ENST00000563410	SPHKAP	Q2M3C7	1700 aa		32.02	■■■□□ 2.72
CHD9-208	ENST00000563410	NUTM2D	Q5VT03	806 aa	Predicted RBP	32.01	■■■□□ 2.71
CHD9-208	ENST00000563410	PHF23	Q9BUL5	403 aa	Predicted RBP	32	■■■□□ 2.71
CHD9-208	ENST00000563410	DIP2A	Q14689	1571 aa		31.99	■■■□□ 2.71
CHD9-208	ENST00000563410	RRBP1	Q9P2E9	1410 aa	Known RBP	31.99	■■■□□ 2.71
CHD9-208	ENST00000563410	MSH6	P52701	1360 aa		31.98	■■■□□ 2.71
CHD9-208	ENST00000563410	PIK3R4	Q99570	1358 aa		31.91	■■■□□ 2.7
CHD9-208	ENST00000563410	NCOA3	Q9Y6Q9	1424 aa		31.91	■■■□□ 2.7
CHD9-208	ENST00000563410	SLAIN2	Q9P270	581 aa		31.9	■■■□□ 2.7
CHD9-208	ENST00000563410	NRXN3	Q9Y4C0	1643 aa		31.89	■■■□□ 2.7
CHD9-208	ENST00000563410	NAIP	Q13075	1403 aa		31.89	■■■□□ 2.7
CHD9-208	ENST00000563410	TRPM2	O94759	1503 aa		31.89	■■■□□ 2.7
CHD9-208	ENST00000563410	PHLPP1	O60346	1717 aa		31.87	■■■□□ 2.69
CHD9-208	ENST00000563410	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	31.87	■■■□□ 2.69
CHD9-208	ENST00000563410	RGS17	Q9UGC6	210 aa	Predicted RBP	31.87	■■■□□ 2.69
CHD9-208	ENST00000563410	PTPRU	Q92729	1446 aa		31.86	■■■□□ 2.69
CHD9-208	ENST00000563410	CLTCL1	P53675	1640 aa		31.86	■■■□□ 2.69
CHD9-208	ENST00000563410	SETBP1	Q9Y6X0	1596 aa		31.83	■■■□□ 2.69
CHD9-208	ENST00000563410	AMOTL2	Q9Y2J4	779 aa		31.81	■■■□□ 2.68
CHD9-208	ENST00000563410	KIF1B	O60333	1816 aa		31.8	■■■□□ 2.68
CHD9-208	ENST00000563410	XRN1	Q8IZH2	1706 aa	Known RBP	31.8	■■■□□ 2.68
CHD9-208	ENST00000563410	C14orf37	Q86TY3	774 aa		31.78	■■■□□ 2.68
CHD9-208	ENST00000563410	NEXMIF	Q5QGS0	1516 aa		31.78	■■■□□ 2.68
CHD9-208	ENST00000563410	COL16A1	Q07092	1604 aa	Predicted RBP	31.78	■■■□□ 2.68
CHD9-208	ENST00000563410	ZNF326	Q5BKZ1	582 aa	Known RBP	31.77	■■■□□ 2.68
CHD9-208	ENST00000563410	C19orf44	Q9H6X5	657 aa		31.77	■■■□□ 2.68
CHD9-208	ENST00000563410	HFM1	A2PYH4	1435 aa		31.75	■■■□□ 2.67
CHD9-208	ENST00000563410	CADPS2	Q86UW7	1296 aa		31.74	■■■□□ 2.67
CHD9-208	ENST00000563410	MET	P08581	1390 aa		31.71	■■■□□ 2.67
CHD9-208	ENST00000563410	JCAD	Q9P266	1359 aa		31.71	■■■□□ 2.67
CHD9-208	ENST00000563410	ATF3	P18847	181 aa		31.7	■■■□□ 2.67
CHD9-208	ENST00000563410	AHDC1	Q5TGY3	1603 aa	Predicted RBP	31.7	■■■□□ 2.66
CHD9-208	ENST00000563410	DCC	P43146	1447 aa		31.66	■■■□□ 2.66
CHD9-208	ENST00000563410	POTEA	Q6S8J7	498 aa		31.66	■■■□□ 2.66
CHD9-208	ENST00000563410	TRIM52	Q96A61	297 aa		31.66	■■■□□ 2.66
CHD9-208	ENST00000563410	SETD1A	O15047	1707 aa	Known RBP	31.63	■■■□□ 2.65
CHD9-208	ENST00000563410	SHPRH	Q149N8	1683 aa		31.61	■■■□□ 2.65
CHD9-208	ENST00000563410	BRINP3	Q76B58	766 aa		31.61	■■■□□ 2.65
CHD9-208	ENST00000563410	NALCN	Q8IZF0	1738 aa		31.59	■■■□□ 2.65
CHD9-208	ENST00000563410	SLC4A1AP	Q9BWU0	796 aa	Known RBP	31.59	■■■□□ 2.65
CHD9-208	ENST00000563410	MST1R	Q04912	1400 aa		31.58	■■■□□ 2.65
CHD9-208	ENST00000563410	LRP6	O75581	1613 aa		31.58	■■■□□ 2.65
CHD9-208	ENST00000563410	PPL	O60437	1756 aa		31.58	■■■□□ 2.65
CHD9-208	ENST00000563410	ASXL1	Q8IXJ9	1541 aa		31.56	■■■□□ 2.64
CHD9-208	ENST00000563410	ADGRL3	Q9HAR2	1447 aa		31.56	■■■□□ 2.64
CHD9-208	ENST00000563410	SPATA31A6	Q5VVP1	1343 aa		31.55	■■■□□ 2.64
CHD9-208	ENST00000563410	NHSL1	Q5SYE7	1610 aa		31.54	■■■□□ 2.64
CHD9-208	ENST00000563410	VGF	O15240	615 aa	Predicted RBP	31.53	■■■□□ 2.64
CHD9-208	ENST00000563410	RPGRIP1L	Q68CZ1	1315 aa		31.51	■■■□□ 2.64
CHD9-208	ENST00000563410	PTCH1	Q13635	1447 aa		31.49	■■■□□ 2.63
CHD9-208	ENST00000563410	FOXD1	Q16676	465 aa		31.48	■■■□□ 2.63
CHD9-208	ENST00000563410	PRAG1	Q86YV5	1406 aa		31.45	■■■□□ 2.63
CHD9-208	ENST00000563410	SETD5	Q9C0A6	1442 aa		31.45	■■■□□ 2.63
CHD9-208	ENST00000563410	ROBO2	Q9HCK4	1378 aa		31.44	■■■□□ 2.62
CHD9-208	ENST00000563410	MEX3C	Q5U5Q3	659 aa	Known RBP	31.41	■■■□□ 2.62
CHD9-208	ENST00000563410	IFT172	Q9UG01	1749 aa		31.4	■■■□□ 2.62
CHD9-208	ENST00000563410	C1orf167	Q5SNV9	1468 aa		31.4	■■■□□ 2.62
CHD9-208	ENST00000563410	DDX17	Q92841	729 aa	Known RBP	31.39	■■■□□ 2.62
CHD9-208	ENST00000563410	CCDC144A	A2RUR9	1427 aa		31.38	■■■□□ 2.61
CHD9-208	ENST00000563410	MPHOSPH9	Q99550	1183 aa		31.37	■■■□□ 2.61
CHD9-208	ENST00000563410	LAMC1	P11047	1609 aa		31.37	■■■□□ 2.61
CHD9-208	ENST00000563410	SPATA31E1	Q6ZUB1	1445 aa		31.36	■■■□□ 2.61
CHD9-208	ENST00000563410	LRRC59	Q96AG4	307 aa	Known RBP	31.36	■■■□□ 2.61
CHD9-208	ENST00000563410	NUTM2B	A6NNL0	878 aa	Predicted RBP	31.35	■■■□□ 2.61
CHD9-208	ENST00000563410	NUTM2E	B1AL46	878 aa	Predicted RBP	31.35	■■■□□ 2.61
CHD9-208	ENST00000563410	ZNF772	Q68DY9	489 aa	Predicted RBP	31.35	■■■□□ 2.61
CHD9-208	ENST00000563410	NUTM2A	Q8IVF1	878 aa	Predicted RBP	31.35	■■■□□ 2.61
CHD9-208	ENST00000563410	ADGRF5	Q8IZF2	1346 aa		31.34	■■■□□ 2.61
CHD9-208	ENST00000563410	PNPLA6	Q8IY17	1366 aa		31.31	■■■□□ 2.6
CHD9-208	ENST00000563410	RGL3	Q3MIN7	710 aa		31.3	■■■□□ 2.6
CHD9-208	ENST00000563410	ORAI2	Q96SN7	254 aa		31.29	■■■□□ 2.6
CHD9-208	ENST00000563410	ANKRD30B	Q9BXX2	1392 aa		31.27	■■■□□ 2.6
CHD9-208	ENST00000563410	CDC42BPG	Q6DT37	1551 aa		31.26	■■■□□ 2.59
CHD9-208	ENST00000563410	KNDC1	Q76NI1	1749 aa		31.24	■■■□□ 2.59
CHD9-208	ENST00000563410	TECPR2	O15040	1411 aa		31.24	■■■□□ 2.59
CHD9-208	ENST00000563410	AFF2	P51816	1311 aa		31.24	■■■□□ 2.59
CHD9-208	ENST00000563410	SOS2	Q07890	1332 aa	Predicted RBP	31.24	■■■□□ 2.59
CHD9-208	ENST00000563410	PIK3C2G	O75747	1445 aa		31.22	■■■□□ 2.59

Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms