RNA–Protein interactions for RNA: ENST00000563404.1

HDGFL3-203, Transcript of HDGF like 3, humanhuman

TSL 5

Gene HDGFL3, Length 448 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3-203ENST00000563404 PROSER2Q86WR7 435 aaPredicted RBP25.95■■□□□ 1.74
HDGFL3-203ENST00000563404 PHF23Q9BUL5 403 aaPredicted RBP25.95■■□□□ 1.74
HDGFL3-203ENST00000563404 FAM135BQ49AJ0 1406 aa25.95■■□□□ 1.74
HDGFL3-203ENST00000563404 GCC2Q8IWJ2 1684 aa25.93■■□□□ 1.74
HDGFL3-203ENST00000563404 TMEM131LA2VDJ0 1609 aa25.93■■□□□ 1.74
HDGFL3-203ENST00000563404 RIMS2Q9UQ26 1411 aa25.93■■□□□ 1.74
HDGFL3-203ENST00000563404 ROCK1Q13464 1354 aa25.93■■□□□ 1.74
HDGFL3-203ENST00000563404 PLEKHG1Q9ULL1 1385 aa25.92■■□□□ 1.74
HDGFL3-203ENST00000563404 NKTRP30414 1462 aaKnown RBP25.91■■□□□ 1.74
HDGFL3-203ENST00000563404 BCANQ96GW7 911 aa25.91■■□□□ 1.74
HDGFL3-203ENST00000563404 E9PCH4 1651 aa25.9■■□□□ 1.74
HDGFL3-203ENST00000563404 RGS17Q9UGC6 210 aaPredicted RBP25.87■■□□□ 1.73
HDGFL3-203ENST00000563404 IQGAP3Q86VI3 1631 aa25.87■■□□□ 1.73
HDGFL3-203ENST00000563404 ROBO1Q9Y6N7 1651 aa25.87■■□□□ 1.73
HDGFL3-203ENST00000563404 PPP1R15AO75807 674 aaPredicted RBP25.86■■□□□ 1.73
HDGFL3-203ENST00000563404 CHD2O14647 1828 aaKnown RBP25.84■■□□□ 1.73
HDGFL3-203ENST00000563404 CHGAP10645 457 aaKnown RBP25.84■■□□□ 1.73
HDGFL3-203ENST00000563404 PPARGC1BQ86YN6 1023 aaKnown RBP25.84■■□□□ 1.73
HDGFL3-203ENST00000563404 ITGAEP38570 1179 aa25.83■■□□□ 1.73
HDGFL3-203ENST00000563404 NUTM2DQ5VT03 806 aaPredicted RBP25.83■■□□□ 1.73
HDGFL3-203ENST00000563404 HDGFP51858 240 aaKnown RBP25.82■■□□□ 1.72
HDGFL3-203ENST00000563404 TBX22Q9Y458 520 aa25.82■■□□□ 1.72
HDGFL3-203ENST00000563404 NUP155O75694 1391 aa25.82■■□□□ 1.72
HDGFL3-203ENST00000563404 MSH6P52701 1360 aa25.82■■□□□ 1.72
HDGFL3-203ENST00000563404 ADAMTS13Q76LX8 1427 aa25.81■■□□□ 1.72
HDGFL3-203ENST00000563404 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.8■■□□□ 1.72
HDGFL3-203ENST00000563404 SLAIN2Q9P270 581 aa25.78■■□□□ 1.72
HDGFL3-203ENST00000563404 DIP2AQ14689 1571 aa25.73■■□□□ 1.71
HDGFL3-203ENST00000563404 NCOA3Q9Y6Q9 1424 aa25.71■■□□□ 1.71
HDGFL3-203ENST00000563404 PTPRUQ92729 1446 aa25.7■■□□□ 1.7
HDGFL3-203ENST00000563404 PIK3R4Q99570 1358 aa25.69■■□□□ 1.7
HDGFL3-203ENST00000563404 PHLPP1O60346 1717 aa25.69■■□□□ 1.7
HDGFL3-203ENST00000563404 POTEAQ6S8J7 498 aa25.69■■□□□ 1.7
HDGFL3-203ENST00000563404 TRPM2O94759 1503 aa25.66■■□□□ 1.7
HDGFL3-203ENST00000563404 SPHKAPQ2M3C7 1700 aa25.66■■□□□ 1.7
HDGFL3-203ENST00000563404 SIPA1L2Q9P2F8 1722 aaPredicted RBP25.66■■□□□ 1.7
HDGFL3-203ENST00000563404 C14orf37Q86TY3 774 aa25.65■■□□□ 1.7
HDGFL3-203ENST00000563404 AMOTL2Q9Y2J4 779 aa25.65■■□□□ 1.7
HDGFL3-203ENST00000563404 NRXN3Q9Y4C0 1643 aa25.65■■□□□ 1.7
HDGFL3-203ENST00000563404 COL16A1Q07092 1604 aaPredicted RBP25.64■■□□□ 1.7
HDGFL3-203ENST00000563404 C19orf44Q9H6X5 657 aa25.64■■□□□ 1.7
HDGFL3-203ENST00000563404 JCADQ9P266 1359 aa25.64■■□□□ 1.69
HDGFL3-203ENST00000563404 CADPS2Q86UW7 1296 aa25.61■■□□□ 1.69
HDGFL3-203ENST00000563404 RRBP1Q9P2E9 1410 aaKnown RBP25.61■■□□□ 1.69
HDGFL3-203ENST00000563404 SETBP1Q9Y6X0 1596 aa25.61■■□□□ 1.69
HDGFL3-203ENST00000563404 XRN1Q8IZH2 1706 aaKnown RBP25.58■■□□□ 1.69
HDGFL3-203ENST00000563404 NAIPQ13075 1403 aa25.58■■□□□ 1.69
HDGFL3-203ENST00000563404 ATF3P18847 181 aa25.58■■□□□ 1.69
HDGFL3-203ENST00000563404 ZNF326Q5BKZ1 582 aaKnown RBP25.58■■□□□ 1.69
HDGFL3-203ENST00000563404 CLTCL1P53675 1640 aa25.58■■□□□ 1.69
HDGFL3-203ENST00000563404 METP08581 1390 aa25.56■■□□□ 1.68
HDGFL3-203ENST00000563404 AHDC1Q5TGY3 1603 aaPredicted RBP25.56■■□□□ 1.68
HDGFL3-203ENST00000563404 LRP6O75581 1613 aa25.55■■□□□ 1.68
HDGFL3-203ENST00000563404 NEXMIFQ5QGS0 1516 aa25.54■■□□□ 1.68
HDGFL3-203ENST00000563404 BRINP3Q76B58 766 aa25.54■■□□□ 1.68
HDGFL3-203ENST00000563404 DCCP43146 1447 aa25.51■■□□□ 1.67
HDGFL3-203ENST00000563404 SPATA31A6Q5VVP1 1343 aa25.5■■□□□ 1.67
HDGFL3-203ENST00000563404 MST1RQ04912 1400 aa25.48■■□□□ 1.67
HDGFL3-203ENST00000563404 SHPRHQ149N8 1683 aa25.48■■□□□ 1.67
HDGFL3-203ENST00000563404 ASXL1Q8IXJ9 1541 aa25.47■■□□□ 1.67
HDGFL3-203ENST00000563404 KIF1BO60333 1816 aa25.44■■□□□ 1.66
HDGFL3-203ENST00000563404 SETD1AO15047 1707 aaKnown RBP25.44■■□□□ 1.66
HDGFL3-203ENST00000563404 HFM1A2PYH4 1435 aa25.44■■□□□ 1.66
HDGFL3-203ENST00000563404 ADGRL3Q9HAR2 1447 aa25.43■■□□□ 1.66
HDGFL3-203ENST00000563404 MEX3CQ5U5Q3 659 aaKnown RBP25.42■■□□□ 1.66
HDGFL3-203ENST00000563404 TRIM52Q96A61 297 aa25.42■■□□□ 1.66
HDGFL3-203ENST00000563404 NALCNQ8IZF0 1738 aa25.4■■□□□ 1.66
HDGFL3-203ENST00000563404 NHSL1Q5SYE7 1610 aa25.4■■□□□ 1.66
HDGFL3-203ENST00000563404 SETD5Q9C0A6 1442 aa25.39■■□□□ 1.66
HDGFL3-203ENST00000563404 DDX17Q92841 729 aaKnown RBP25.39■■□□□ 1.66
HDGFL3-203ENST00000563404 NUTM2BA6NNL0 878 aaPredicted RBP25.37■■□□□ 1.65
HDGFL3-203ENST00000563404 NUTM2EB1AL46 878 aaPredicted RBP25.37■■□□□ 1.65
HDGFL3-203ENST00000563404 NUTM2AQ8IVF1 878 aaPredicted RBP25.37■■□□□ 1.65
HDGFL3-203ENST00000563404 ZNF772Q68DY9 489 aaPredicted RBP25.36■■□□□ 1.65
HDGFL3-203ENST00000563404 SLC4A1APQ9BWU0 796 aaKnown RBP25.36■■□□□ 1.65
HDGFL3-203ENST00000563404 ROBO2Q9HCK4 1378 aa25.35■■□□□ 1.65
HDGFL3-203ENST00000563404 VGFO15240 615 aaPredicted RBP25.35■■□□□ 1.65
HDGFL3-203ENST00000563404 PTCH1Q13635 1447 aa25.34■■□□□ 1.65
HDGFL3-203ENST00000563404 C1orf167Q5SNV9 1468 aa25.33■■□□□ 1.65
HDGFL3-203ENST00000563404 RPGRIP1LQ68CZ1 1315 aa25.33■■□□□ 1.64
HDGFL3-203ENST00000563404 FOXD1Q16676 465 aa25.32■■□□□ 1.64
HDGFL3-203ENST00000563404 LRRC59Q96AG4 307 aaKnown RBP25.31■■□□□ 1.64
HDGFL3-203ENST00000563404 PPLO60437 1756 aa25.31■■□□□ 1.64
HDGFL3-203ENST00000563404 PRAG1Q86YV5 1406 aa25.3■■□□□ 1.64
HDGFL3-203ENST00000563404 PNPLA6Q8IY17 1366 aa25.3■■□□□ 1.64
HDGFL3-203ENST00000563404 AFF2P51816 1311 aa25.28■■□□□ 1.64
HDGFL3-203ENST00000563404 ORAI2Q96SN7 254 aa25.26■■□□□ 1.63
HDGFL3-203ENST00000563404 RXRBP28702 533 aa25.25■■□□□ 1.63
HDGFL3-203ENST00000563404 LAMC1P11047 1609 aa25.25■■□□□ 1.63
HDGFL3-203ENST00000563404 UPF1Q92900 1129 aaKnown RBP eCLIP25.23■■□□□ 1.63
HDGFL3-203ENST00000563404 ADGRF5Q8IZF2 1346 aa25.22■■□□□ 1.63
HDGFL3-203ENST00000563404 C8orf37Q96NL8 207 aa25.22■■□□□ 1.63
HDGFL3-203ENST00000563404 SOS2Q07890 1332 aaPredicted RBP25.21■■□□□ 1.63
HDGFL3-203ENST00000563404 SPATA31E1Q6ZUB1 1445 aa25.2■■□□□ 1.62
HDGFL3-203ENST00000563404 CDK12Q9NYV4 1490 aaPredicted RBP25.19■■□□□ 1.62
HDGFL3-203ENST00000563404 RGL3Q3MIN7 710 aa25.18■■□□□ 1.62
HDGFL3-203ENST00000563404 MPHOSPH9Q99550 1183 aa25.18■■□□□ 1.62
HDGFL3-203ENST00000563404 CCDC144AA2RUR9 1427 aa25.18■■□□□ 1.62
HDGFL3-203ENST00000563404 ADAMTS2O95450 1211 aa25.15■■□□□ 1.62
HDGFL3-203ENST00000563404 QTRT2Q9H974 415 aaKnown RBP25.15■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms