RNA–Protein interactions for RNA: ENST00000562874.2

SF3B3-203, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 401 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-203ENST00000562874 DISP3Q9P2K9 1392 aa24.02■■□□□ 1.44
SF3B3-203ENST00000562874 SLC52A1Q9NWF4 448 aa24.01■■□□□ 1.43
SF3B3-203ENST00000562874 KIF1BO60333 1816 aa23.99■■□□□ 1.43
SF3B3-203ENST00000562874 RIMS2Q9UQ26 1411 aa23.99■■□□□ 1.43
SF3B3-203ENST00000562874 TOM1O60784 492 aa23.98■■□□□ 1.43
SF3B3-203ENST00000562874 CLTCL1P53675 1640 aa23.98■■□□□ 1.43
SF3B3-203ENST00000562874 SLC26A8Q96RN1 970 aa23.97■■□□□ 1.43
SF3B3-203ENST00000562874 NAIPQ13075 1403 aa23.96■■□□□ 1.43
SF3B3-203ENST00000562874 CHGAP10645 457 aaKnown RBP23.96■■□□□ 1.43
SF3B3-203ENST00000562874 HSPA1LP34931 641 aa23.93■■□□□ 1.42
SF3B3-203ENST00000562874 MED1Q15648 1581 aaPredicted RBP23.93■■□□□ 1.42
SF3B3-203ENST00000562874 BCANQ96GW7 911 aa23.92■■□□□ 1.42
SF3B3-203ENST00000562874 NKTRP30414 1462 aaKnown RBP23.92■■□□□ 1.42
SF3B3-203ENST00000562874 NRXN3Q9Y4C0 1643 aa23.92■■□□□ 1.42
SF3B3-203ENST00000562874 PLEKHG1Q9ULL1 1385 aa23.91■■□□□ 1.42
SF3B3-203ENST00000562874 DIP2AQ14689 1571 aa23.91■■□□□ 1.42
SF3B3-203ENST00000562874 PPP1R15AO75807 674 aaPredicted RBP23.9■■□□□ 1.42
SF3B3-203ENST00000562874 NUTM2DQ5VT03 806 aaPredicted RBP23.9■■□□□ 1.42
SF3B3-203ENST00000562874 TRPM2O94759 1503 aa23.89■■□□□ 1.42
SF3B3-203ENST00000562874 ROBO1Q9Y6N7 1651 aa23.89■■□□□ 1.41
SF3B3-203ENST00000562874 TMEM94Q12767 1356 aa23.88■■□□□ 1.41
SF3B3-203ENST00000562874 HFM1A2PYH4 1435 aa23.87■■□□□ 1.41
SF3B3-203ENST00000562874 RBM33Q96EV2 1170 aaKnown RBP23.87■■□□□ 1.41
SF3B3-203ENST00000562874 KCNA6P17658 529 aa23.85■■□□□ 1.41
SF3B3-203ENST00000562874 ILDR2Q71H61 639 aa23.85■■□□□ 1.41
SF3B3-203ENST00000562874 ADAMTS13Q76LX8 1427 aa23.84■■□□□ 1.41
SF3B3-203ENST00000562874 NEXMIFQ5QGS0 1516 aa23.83■■□□□ 1.41
SF3B3-203ENST00000562874 XRN1Q8IZH2 1706 aaKnown RBP23.81■■□□□ 1.4
SF3B3-203ENST00000562874 PROSER2Q86WR7 435 aaPredicted RBP23.8■■□□□ 1.4
SF3B3-203ENST00000562874 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.8■■□□□ 1.4
SF3B3-203ENST00000562874 SETBP1Q9Y6X0 1596 aa23.8■■□□□ 1.4
SF3B3-203ENST00000562874 PPLO60437 1756 aa23.79■■□□□ 1.4
SF3B3-203ENST00000562874 SETD1AO15047 1707 aaKnown RBP23.79■■□□□ 1.4
SF3B3-203ENST00000562874 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.78■■□□□ 1.4
SF3B3-203ENST00000562874 PHLPP1O60346 1717 aa23.77■■□□□ 1.4
SF3B3-203ENST00000562874 HDGFP51858 240 aaKnown RBP23.77■■□□□ 1.4
SF3B3-203ENST00000562874 TRIM52Q96A61 297 aa23.76■■□□□ 1.39
SF3B3-203ENST00000562874 ZNF326Q5BKZ1 582 aaKnown RBP23.73■■□□□ 1.39
SF3B3-203ENST00000562874 MSH6P52701 1360 aa23.73■■□□□ 1.39
SF3B3-203ENST00000562874 PTPRUQ92729 1446 aa23.73■■□□□ 1.39
SF3B3-203ENST00000562874 TBX22Q9Y458 520 aa23.72■■□□□ 1.39
SF3B3-203ENST00000562874 NALCNQ8IZF0 1738 aa23.71■■□□□ 1.39
SF3B3-203ENST00000562874 IFT172Q9UG01 1749 aa23.71■■□□□ 1.39
SF3B3-203ENST00000562874 FAM135BQ49AJ0 1406 aa23.68■■□□□ 1.38
SF3B3-203ENST00000562874 PIK3R4Q99570 1358 aa23.68■■□□□ 1.38
SF3B3-203ENST00000562874 SLC4A1APQ9BWU0 796 aaKnown RBP23.67■■□□□ 1.38
SF3B3-203ENST00000562874 COL16A1Q07092 1604 aaPredicted RBP23.65■■□□□ 1.38
SF3B3-203ENST00000562874 FOXD1Q16676 465 aa23.63■■□□□ 1.37
SF3B3-203ENST00000562874 C14orf37Q86TY3 774 aa23.63■■□□□ 1.37
SF3B3-203ENST00000562874 METP08581 1390 aa23.62■■□□□ 1.37
SF3B3-203ENST00000562874 AMOTL2Q9Y2J4 779 aa23.61■■□□□ 1.37
SF3B3-203ENST00000562874 NCOA3Q9Y6Q9 1424 aa23.59■■□□□ 1.37
SF3B3-203ENST00000562874 PHF23Q9BUL5 403 aaPredicted RBP23.58■■□□□ 1.37
SF3B3-203ENST00000562874 NHSL1Q5SYE7 1610 aa23.56■■□□□ 1.36
SF3B3-203ENST00000562874 AHDC1Q5TGY3 1603 aaPredicted RBP23.56■■□□□ 1.36
SF3B3-203ENST00000562874 SOCS7O14512 581 aa23.56■■□□□ 1.36
SF3B3-203ENST00000562874 SLAIN2Q9P270 581 aa23.56■■□□□ 1.36
SF3B3-203ENST00000562874 CCDC144AA2RUR9 1427 aa23.55■■□□□ 1.36
SF3B3-203ENST00000562874 SHPRHQ149N8 1683 aa23.54■■□□□ 1.36
SF3B3-203ENST00000562874 DCCP43146 1447 aa23.5■■□□□ 1.35
SF3B3-203ENST00000562874 SETD5Q9C0A6 1442 aa23.5■■□□□ 1.35
SF3B3-203ENST00000562874 ADGRL3Q9HAR2 1447 aa23.5■■□□□ 1.35
SF3B3-203ENST00000562874 ASXL1Q8IXJ9 1541 aa23.5■■□□□ 1.35
SF3B3-203ENST00000562874 ATF3P18847 181 aa23.5■■□□□ 1.35
SF3B3-203ENST00000562874 MPHOSPH9Q99550 1183 aa23.5■■□□□ 1.35
SF3B3-203ENST00000562874 KNDC1Q76NI1 1749 aa23.5■■□□□ 1.35
SF3B3-203ENST00000562874 CADPS2Q86UW7 1296 aa23.49■■□□□ 1.35
SF3B3-203ENST00000562874 C19orf44Q9H6X5 657 aa23.49■■□□□ 1.35
SF3B3-203ENST00000562874 MST1RQ04912 1400 aa23.49■■□□□ 1.35
SF3B3-203ENST00000562874 SPATA31E1Q6ZUB1 1445 aa23.49■■□□□ 1.35
SF3B3-203ENST00000562874 PTCH1Q13635 1447 aa23.48■■□□□ 1.35
SF3B3-203ENST00000562874 RAB3GAP2Q9H2M9 1393 aa23.47■■□□□ 1.35
SF3B3-203ENST00000562874 VGFO15240 615 aaPredicted RBP23.45■■□□□ 1.34
SF3B3-203ENST00000562874 RPGRIP1LQ68CZ1 1315 aa23.44■■□□□ 1.34
SF3B3-203ENST00000562874 ROBO2Q9HCK4 1378 aa23.43■■□□□ 1.34
SF3B3-203ENST00000562874 JCADQ9P266 1359 aa23.43■■□□□ 1.34
SF3B3-203ENST00000562874 RGL3Q3MIN7 710 aa23.43■■□□□ 1.34
SF3B3-203ENST00000562874 LRP6O75581 1613 aa23.43■■□□□ 1.34
SF3B3-203ENST00000562874 PRAG1Q86YV5 1406 aa23.42■■□□□ 1.34
SF3B3-203ENST00000562874 LAMC1P11047 1609 aa23.41■■□□□ 1.34
SF3B3-203ENST00000562874 ADGRF5Q8IZF2 1346 aa23.41■■□□□ 1.34
SF3B3-203ENST00000562874 BRINP3Q76B58 766 aa23.41■■□□□ 1.34
SF3B3-203ENST00000562874 RGS17Q9UGC6 210 aaPredicted RBP23.41■■□□□ 1.34
SF3B3-203ENST00000562874 PIK3C2GO75747 1445 aa23.38■■□□□ 1.33
SF3B3-203ENST00000562874 CDC42BPGQ6DT37 1551 aa23.38■■□□□ 1.33
SF3B3-203ENST00000562874 RGPD8O14715 1765 aaPredicted RBP23.37■■□□□ 1.33
SF3B3-203ENST00000562874 FMN2Q9NZ56 1722 aa23.35■■□□□ 1.33
SF3B3-203ENST00000562874 ANKRD30BQ9BXX2 1392 aa23.35■■□□□ 1.33
SF3B3-203ENST00000562874 C1orf167Q5SNV9 1468 aa23.34■■□□□ 1.33
SF3B3-203ENST00000562874 MYOM2P54296 1465 aa23.33■■□□□ 1.33
SF3B3-203ENST00000562874 DDX17Q92841 729 aaKnown RBP23.32■■□□□ 1.32
SF3B3-203ENST00000562874 NRXN1Q9ULB1 1477 aa23.3■■□□□ 1.32
SF3B3-203ENST00000562874 TECPR2O15040 1411 aa23.29■■□□□ 1.32
SF3B3-203ENST00000562874 POTEAQ6S8J7 498 aa23.29■■□□□ 1.32
SF3B3-203ENST00000562874 STK26Q9P289 416 aa23.29■■□□□ 1.32
SF3B3-203ENST00000562874 SPATA31A6Q5VVP1 1343 aa23.28■■□□□ 1.32
SF3B3-203ENST00000562874 TMEM132EQ6IEE7 984 aa23.27■■□□□ 1.32
SF3B3-203ENST00000562874 ACIN1Q9UKV3 1341 aaKnown RBP23.27■■□□□ 1.32
SF3B3-203ENST00000562874 LRPPRCP42704 1394 aaKnown RBP23.27■■□□□ 1.31
SF3B3-203ENST00000562874 PLEKHH1Q9ULM0 1364 aa23.27■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms