RNA–Protein interactions for RNA: ENST00000560959.5

TPM1-226, Transcript of tropomyosin 1, humanhuman

TSL 2 BASIC

Gene TPM1, Length 925 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-226ENST00000560959 NWD1Q149M9 1564 aa29.03■■■□□ 2.24
TPM1-226ENST00000560959 HDGFP51858 240 aaKnown RBP29.02■■■□□ 2.24
TPM1-226ENST00000560959 ADGRB3O60242 1522 aa29.02■■■□□ 2.24
TPM1-226ENST00000560959 BCANQ96GW7 911 aa29■■■□□ 2.23
TPM1-226ENST00000560959 RPRD2Q5VT52 1461 aaKnown RBP28.99■■■□□ 2.23
TPM1-226ENST00000560959 JCADQ9P266 1359 aa28.98■■■□□ 2.23
TPM1-226ENST00000560959 NCOA3Q9Y6Q9 1424 aa28.97■■■□□ 2.23
TPM1-226ENST00000560959 PLEKHG1Q9ULL1 1385 aa28.97■■■□□ 2.23
TPM1-226ENST00000560959 TBX22Q9Y458 520 aa28.95■■■□□ 2.22
TPM1-226ENST00000560959 ADGRL2O95490 1459 aa28.95■■■□□ 2.22
TPM1-226ENST00000560959 ZFYVE9O95405 1425 aa28.94■■■□□ 2.22
TPM1-226ENST00000560959 RIMS2Q9UQ26 1411 aa28.89■■■□□ 2.22
TPM1-226ENST00000560959 PPP1R15AO75807 674 aaPredicted RBP28.89■■■□□ 2.22
TPM1-226ENST00000560959 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.89■■■□□ 2.22
TPM1-226ENST00000560959 ANKRD50Q9ULJ7 1429 aa28.88■■■□□ 2.21
TPM1-226ENST00000560959 PHLPP1O60346 1717 aa28.87■■■□□ 2.21
TPM1-226ENST00000560959 SPATA31A6Q5VVP1 1343 aa28.87■■■□□ 2.21
TPM1-226ENST00000560959 CHD2O14647 1828 aaKnown RBP28.86■■■□□ 2.21
TPM1-226ENST00000560959 CADPS2Q86UW7 1296 aa28.84■■■□□ 2.21
TPM1-226ENST00000560959 C19orf44Q9H6X5 657 aa28.84■■■□□ 2.21
TPM1-226ENST00000560959 PIK3R4Q99570 1358 aa28.83■■■□□ 2.21
TPM1-226ENST00000560959 ZNF772Q68DY9 489 aaPredicted RBP28.81■■■□□ 2.2
TPM1-226ENST00000560959 TMEM131LA2VDJ0 1609 aa28.8■■■□□ 2.2
TPM1-226ENST00000560959 COL16A1Q07092 1604 aaPredicted RBP28.8■■■□□ 2.2
TPM1-226ENST00000560959 C14orf37Q86TY3 774 aa28.78■■■□□ 2.2
TPM1-226ENST00000560959 ADAMTS13Q76LX8 1427 aa28.77■■■□□ 2.2
TPM1-226ENST00000560959 ATF3P18847 181 aa28.77■■■□□ 2.2
TPM1-226ENST00000560959 FAM50AQ14320 339 aaKnown RBP28.77■■■□□ 2.2
TPM1-226ENST00000560959 MEX3CQ5U5Q3 659 aaKnown RBP28.74■■■□□ 2.19
TPM1-226ENST00000560959 DIP2AQ14689 1571 aa28.74■■■□□ 2.19
TPM1-226ENST00000560959 GCC2Q8IWJ2 1684 aa28.74■■■□□ 2.19
TPM1-226ENST00000560959 CHGAP10645 457 aaKnown RBP28.73■■■□□ 2.19
TPM1-226ENST00000560959 LRP6O75581 1613 aa28.72■■■□□ 2.19
TPM1-226ENST00000560959 AHDC1Q5TGY3 1603 aaPredicted RBP28.72■■■□□ 2.19
TPM1-226ENST00000560959 MYO5BQ9ULV0 1848 aa28.72■■■□□ 2.19
TPM1-226ENST00000560959 UPF1Q92900 1129 aaKnown RBP eCLIP28.71■■■□□ 2.19
TPM1-226ENST00000560959 AMOTL2Q9Y2J4 779 aa28.68■■■□□ 2.18
TPM1-226ENST00000560959 SETD1AO15047 1707 aaKnown RBP28.68■■■□□ 2.18
TPM1-226ENST00000560959 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.68■■■□□ 2.18
TPM1-226ENST00000560959 NUTM2DQ5VT03 806 aaPredicted RBP28.67■■■□□ 2.18
TPM1-226ENST00000560959 BRINP3Q76B58 766 aa28.67■■■□□ 2.18
TPM1-226ENST00000560959 UNC13BO14795 1591 aa28.67■■■□□ 2.18
TPM1-226ENST00000560959 SHPRHQ149N8 1683 aa28.65■■■□□ 2.18
TPM1-226ENST00000560959 RXRBP28702 533 aa28.65■■■□□ 2.18
TPM1-226ENST00000560959 DCCP43146 1447 aa28.65■■■□□ 2.18
TPM1-226ENST00000560959 ROCK1Q13464 1354 aa28.64■■■□□ 2.18
TPM1-226ENST00000560959 TRPM2O94759 1503 aa28.64■■■□□ 2.17
TPM1-226ENST00000560959 TRIM52Q96A61 297 aa28.62■■■□□ 2.17
TPM1-226ENST00000560959 PTPRUQ92729 1446 aa28.61■■■□□ 2.17
TPM1-226ENST00000560959 E9PCH4 1651 aa28.61■■■□□ 2.17
TPM1-226ENST00000560959 CDK12Q9NYV4 1490 aaPredicted RBP28.6■■■□□ 2.17
TPM1-226ENST00000560959 SETD5Q9C0A6 1442 aa28.59■■■□□ 2.17
TPM1-226ENST00000560959 IQGAP3Q86VI3 1631 aa28.57■■■□□ 2.16
TPM1-226ENST00000560959 NUP155O75694 1391 aa28.56■■■□□ 2.16
TPM1-226ENST00000560959 LRRC59Q96AG4 307 aaKnown RBP28.56■■■□□ 2.16
TPM1-226ENST00000560959 NUTM2BA6NNL0 878 aaPredicted RBP28.54■■■□□ 2.16
TPM1-226ENST00000560959 NUTM2EB1AL46 878 aaPredicted RBP28.54■■■□□ 2.16
TPM1-226ENST00000560959 NUTM2AQ8IVF1 878 aaPredicted RBP28.54■■■□□ 2.16
TPM1-226ENST00000560959 ASXL1Q8IXJ9 1541 aa28.52■■■□□ 2.16
TPM1-226ENST00000560959 MST1RQ04912 1400 aa28.52■■■□□ 2.16
TPM1-226ENST00000560959 AFF2P51816 1311 aa28.51■■■□□ 2.15
TPM1-226ENST00000560959 SETBP1Q9Y6X0 1596 aa28.5■■■□□ 2.15
TPM1-226ENST00000560959 XRN1Q8IZH2 1706 aaKnown RBP28.47■■■□□ 2.15
TPM1-226ENST00000560959 METP08581 1390 aa28.46■■■□□ 2.15
TPM1-226ENST00000560959 NRXN3Q9Y4C0 1643 aa28.44■■■□□ 2.14
TPM1-226ENST00000560959 RBM6P78332 1123 aaKnown RBP28.44■■■□□ 2.14
TPM1-226ENST00000560959 QTRT2Q9H974 415 aaKnown RBP28.44■■■□□ 2.14
TPM1-226ENST00000560959 NHSL1Q5SYE7 1610 aa28.43■■■□□ 2.14
TPM1-226ENST00000560959 ZNF326Q5BKZ1 582 aaKnown RBP28.43■■■□□ 2.14
TPM1-226ENST00000560959 ADGRL3Q9HAR2 1447 aa28.43■■■□□ 2.14
TPM1-226ENST00000560959 PNPLA6Q8IY17 1366 aa28.41■■■□□ 2.14
TPM1-226ENST00000560959 C8orf37Q96NL8 207 aa28.41■■■□□ 2.14
TPM1-226ENST00000560959 DDX17Q92841 729 aaKnown RBP28.35■■■□□ 2.13
TPM1-226ENST00000560959 NGLY1Q96IV0 654 aa28.35■■■□□ 2.13
TPM1-226ENST00000560959 RGS12O14924 1447 aa28.35■■■□□ 2.13
TPM1-226ENST00000560959 C1orf167Q5SNV9 1468 aa28.33■■■□□ 2.13
TPM1-226ENST00000560959 SPHKAPQ2M3C7 1700 aa28.32■■■□□ 2.12
TPM1-226ENST00000560959 ITGAEP38570 1179 aa28.31■■■□□ 2.12
TPM1-226ENST00000560959 SOS2Q07890 1332 aaPredicted RBP28.31■■■□□ 2.12
TPM1-226ENST00000560959 NEXMIFQ5QGS0 1516 aa28.29■■■□□ 2.12
TPM1-226ENST00000560959 VGFO15240 615 aaPredicted RBP28.28■■■□□ 2.12
TPM1-226ENST00000560959 PTCH1Q13635 1447 aa28.27■■■□□ 2.12
TPM1-226ENST00000560959 ADAMTS2O95450 1211 aa28.27■■■□□ 2.12
TPM1-226ENST00000560959 LAMC1P11047 1609 aa28.27■■■□□ 2.12
TPM1-226ENST00000560959 FNBP4Q8N3X1 1017 aaPredicted RBP28.26■■■□□ 2.11
TPM1-226ENST00000560959 TRPC5Q9UL62 973 aaPredicted RBP28.25■■■□□ 2.11
TPM1-226ENST00000560959 NALCNQ8IZF0 1738 aa28.25■■■□□ 2.11
TPM1-226ENST00000560959 ORAI2Q96SN7 254 aa28.24■■■□□ 2.11
TPM1-226ENST00000560959 PRAG1Q86YV5 1406 aa28.24■■■□□ 2.11
TPM1-226ENST00000560959 ATAD2Q6PL18 1390 aa28.24■■■□□ 2.11
TPM1-226ENST00000560959 SRCAPQ6ZRS2 3230 aa28.23■■■□□ 2.11
TPM1-226ENST00000560959 USP21Q9UK80 565 aa28.23■■■□□ 2.11
TPM1-226ENST00000560959 RPGRIP1LQ68CZ1 1315 aa28.21■■■□□ 2.11
TPM1-226ENST00000560959 FOXD1Q16676 465 aa28.21■■■□□ 2.11
TPM1-226ENST00000560959 ROBO2Q9HCK4 1378 aa28.21■■■□□ 2.11
TPM1-226ENST00000560959 CLTCL1P53675 1640 aa28.21■■■□□ 2.11
TPM1-226ENST00000560959 HFM1A2PYH4 1435 aa28.18■■■□□ 2.1
TPM1-226ENST00000560959 CCDC125Q86Z20 511 aa28.14■■■□□ 2.1
TPM1-226ENST00000560959 ATRNO75882 1429 aa28.14■■■□□ 2.1
TPM1-226ENST00000560959 KIF1BO60333 1816 aa28.13■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms