RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 TMEM131LA2VDJ0 1609 aa21.55■■□□□ 1.04
LDLR-213ENST00000560502 FAM50AQ14320 339 aaKnown RBP21.54■■□□□ 1.04
LDLR-213ENST00000560502 PHF23Q9BUL5 403 aaPredicted RBP21.54■■□□□ 1.04
LDLR-213ENST00000560502 SLC26A8Q96RN1 970 aa21.53■■□□□ 1.04
LDLR-213ENST00000560502 ROBO1Q9Y6N7 1651 aa21.53■■□□□ 1.04
LDLR-213ENST00000560502 CHD2O14647 1828 aaKnown RBP21.52■■□□□ 1.04
LDLR-213ENST00000560502 E9PCH4 1651 aa21.51■■□□□ 1.03
LDLR-213ENST00000560502 PLEKHG1Q9ULL1 1385 aa21.49■■□□□ 1.03
LDLR-213ENST00000560502 IQGAP3Q86VI3 1631 aa21.49■■□□□ 1.03
LDLR-213ENST00000560502 RIMS2Q9UQ26 1411 aa21.48■■□□□ 1.03
LDLR-213ENST00000560502 PROSER2Q86WR7 435 aaPredicted RBP21.47■■□□□ 1.03
LDLR-213ENST00000560502 ROCK1Q13464 1354 aa21.47■■□□□ 1.03
LDLR-213ENST00000560502 RGS17Q9UGC6 210 aaPredicted RBP21.45■■□□□ 1.02
LDLR-213ENST00000560502 RBM33Q96EV2 1170 aaKnown RBP21.44■■□□□ 1.02
LDLR-213ENST00000560502 MSH6P52701 1360 aa21.42■■□□□ 1.02
LDLR-213ENST00000560502 DIP2AQ14689 1571 aa21.42■■□□□ 1.02
LDLR-213ENST00000560502 ADAMTS13Q76LX8 1427 aa21.4■■□□□ 1.02
LDLR-213ENST00000560502 PHLPP1O60346 1717 aa21.4■■□□□ 1.02
LDLR-213ENST00000560502 BCANQ96GW7 911 aa21.39■■□□□ 1.01
LDLR-213ENST00000560502 PPP1R15AO75807 674 aaPredicted RBP21.38■■□□□ 1.01
LDLR-213ENST00000560502 HDGFP51858 240 aaKnown RBP21.38■■□□□ 1.01
LDLR-213ENST00000560502 TBX22Q9Y458 520 aa21.38■■□□□ 1.01
LDLR-213ENST00000560502 NCOA3Q9Y6Q9 1424 aa21.38■■□□□ 1.01
LDLR-213ENST00000560502 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.36■■□□□ 1.01
LDLR-213ENST00000560502 COL16A1Q07092 1604 aaPredicted RBP21.36■■□□□ 1.01
LDLR-213ENST00000560502 SLAIN2Q9P270 581 aa21.35■■□□□ 1.01
LDLR-213ENST00000560502 PIK3R4Q99570 1358 aa21.35■■□□□ 1.01
LDLR-213ENST00000560502 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.34■■□□□ 1.01
LDLR-213ENST00000560502 SPHKAPQ2M3C7 1700 aa21.33■■□□□ 1.01
LDLR-213ENST00000560502 NUP155O75694 1391 aa21.33■■□□□ 1
LDLR-213ENST00000560502 CHGAP10645 457 aaKnown RBP21.32■■□□□ 1
LDLR-213ENST00000560502 TRPM2O94759 1503 aa21.32■■□□□ 1
LDLR-213ENST00000560502 NRXN3Q9Y4C0 1643 aa21.32■■□□□ 1
LDLR-213ENST00000560502 POTEAQ6S8J7 498 aa21.3■■□□□ 1
LDLR-213ENST00000560502 AHDC1Q5TGY3 1603 aaPredicted RBP21.29■■□□□ 1
LDLR-213ENST00000560502 XRN1Q8IZH2 1706 aaKnown RBP21.29■■□□□ 1
LDLR-213ENST00000560502 SETBP1Q9Y6X0 1596 aa21.29■■□□□ 1
LDLR-213ENST00000560502 JCADQ9P266 1359 aa21.29■■□□□ 1
LDLR-213ENST00000560502 NUTM2DQ5VT03 806 aaPredicted RBP21.29■■□□□ 1
LDLR-213ENST00000560502 PTPRUQ92729 1446 aa21.29■■□□□ 1
LDLR-213ENST00000560502 SHPRHQ149N8 1683 aa21.25■□□□□ 0.99
LDLR-213ENST00000560502 LRP6O75581 1613 aa21.23■□□□□ 0.99
LDLR-213ENST00000560502 ITGAEP38570 1179 aa21.23■□□□□ 0.99
LDLR-213ENST00000560502 CADPS2Q86UW7 1296 aa21.23■□□□□ 0.99
LDLR-213ENST00000560502 C19orf44Q9H6X5 657 aa21.23■□□□□ 0.99
LDLR-213ENST00000560502 CLTCL1P53675 1640 aa21.22■□□□□ 0.99
LDLR-213ENST00000560502 DCCP43146 1447 aa21.21■□□□□ 0.99
LDLR-213ENST00000560502 SETD1AO15047 1707 aaKnown RBP21.21■□□□□ 0.99
LDLR-213ENST00000560502 C14orf37Q86TY3 774 aa21.21■□□□□ 0.99
LDLR-213ENST00000560502 AMOTL2Q9Y2J4 779 aa21.21■□□□□ 0.99
LDLR-213ENST00000560502 NEXMIFQ5QGS0 1516 aa21.2■□□□□ 0.98
LDLR-213ENST00000560502 ATF3P18847 181 aa21.18■□□□□ 0.98
LDLR-213ENST00000560502 SPATA31A6Q5VVP1 1343 aa21.18■□□□□ 0.98
LDLR-213ENST00000560502 RRBP1Q9P2E9 1410 aaKnown RBP21.18■□□□□ 0.98
LDLR-213ENST00000560502 TRIM26Q12899 539 aaPredicted RBP21.17■□□□□ 0.98
LDLR-213ENST00000560502 NHSL1Q5SYE7 1610 aa21.17■□□□□ 0.98
LDLR-213ENST00000560502 KIF1BO60333 1816 aa21.17■□□□□ 0.98
LDLR-213ENST00000560502 ASXL1Q8IXJ9 1541 aa21.16■□□□□ 0.98
LDLR-213ENST00000560502 PPARGC1BQ86YN6 1023 aaKnown RBP21.16■□□□□ 0.98
LDLR-213ENST00000560502 MST1RQ04912 1400 aa21.15■□□□□ 0.98
LDLR-213ENST00000560502 METP08581 1390 aa21.15■□□□□ 0.98
LDLR-213ENST00000560502 BRINP3Q76B58 766 aa21.15■□□□□ 0.98
LDLR-213ENST00000560502 NAIPQ13075 1403 aa21.14■□□□□ 0.98
LDLR-213ENST00000560502 NALCNQ8IZF0 1738 aa21.14■□□□□ 0.97
LDLR-213ENST00000560502 ADGRL3Q9HAR2 1447 aa21.12■□□□□ 0.97
LDLR-213ENST00000560502 ZNF326Q5BKZ1 582 aaKnown RBP21.11■□□□□ 0.97
LDLR-213ENST00000560502 SETD5Q9C0A6 1442 aa21.1■□□□□ 0.97
LDLR-213ENST00000560502 MEX3CQ5U5Q3 659 aaKnown RBP21.06■□□□□ 0.96
LDLR-213ENST00000560502 LAMC1P11047 1609 aa21.06■□□□□ 0.96
LDLR-213ENST00000560502 PTCH1Q13635 1447 aa21.05■□□□□ 0.96
LDLR-213ENST00000560502 PRAG1Q86YV5 1406 aa21.05■□□□□ 0.96
LDLR-213ENST00000560502 ZNF772Q68DY9 489 aaPredicted RBP21.05■□□□□ 0.96
LDLR-213ENST00000560502 HFM1A2PYH4 1435 aa21.04■□□□□ 0.96
LDLR-213ENST00000560502 PPLO60437 1756 aa21.04■□□□□ 0.96
LDLR-213ENST00000560502 CDK12Q9NYV4 1490 aaPredicted RBP21.01■□□□□ 0.95
LDLR-213ENST00000560502 C1orf167Q5SNV9 1468 aa21■□□□□ 0.95
LDLR-213ENST00000560502 PNPLA6Q8IY17 1366 aa20.99■□□□□ 0.95
LDLR-213ENST00000560502 ROBO2Q9HCK4 1378 aa20.98■□□□□ 0.95
LDLR-213ENST00000560502 NUTM2BA6NNL0 878 aaPredicted RBP20.98■□□□□ 0.95
LDLR-213ENST00000560502 NUTM2EB1AL46 878 aaPredicted RBP20.98■□□□□ 0.95
LDLR-213ENST00000560502 NUTM2AQ8IVF1 878 aaPredicted RBP20.98■□□□□ 0.95
LDLR-213ENST00000560502 LRRC59Q96AG4 307 aaKnown RBP20.98■□□□□ 0.95
LDLR-213ENST00000560502 DDX17Q92841 729 aaKnown RBP20.97■□□□□ 0.95
LDLR-213ENST00000560502 VGFO15240 615 aaPredicted RBP20.96■□□□□ 0.95
LDLR-213ENST00000560502 PCGF6Q9BYE7 350 aa20.96■□□□□ 0.95
LDLR-213ENST00000560502 RPGRIP1LQ68CZ1 1315 aa20.96■□□□□ 0.95
LDLR-213ENST00000560502 TRIM52Q96A61 297 aa20.95■□□□□ 0.94
LDLR-213ENST00000560502 AFF2P51816 1311 aa20.95■□□□□ 0.94
LDLR-213ENST00000560502 RXRBP28702 533 aa20.94■□□□□ 0.94
LDLR-213ENST00000560502 UPF1Q92900 1129 aaKnown RBP eCLIP20.93■□□□□ 0.94
LDLR-213ENST00000560502 IFT172Q9UG01 1749 aa20.92■□□□□ 0.94
LDLR-213ENST00000560502 SLC4A1APQ9BWU0 796 aaKnown RBP20.92■□□□□ 0.94
LDLR-213ENST00000560502 CDC42BPGQ6DT37 1551 aa20.92■□□□□ 0.94
LDLR-213ENST00000560502 COL22A1Q8NFW1 1626 aaPredicted RBP20.9■□□□□ 0.94
LDLR-213ENST00000560502 SOS2Q07890 1332 aaPredicted RBP20.9■□□□□ 0.94
LDLR-213ENST00000560502 RGS12O14924 1447 aa20.88■□□□□ 0.93
LDLR-213ENST00000560502 ORAI2Q96SN7 254 aa20.88■□□□□ 0.93
LDLR-213ENST00000560502 C8orf37Q96NL8 207 aa20.87■□□□□ 0.93
LDLR-213ENST00000560502 KNDC1Q76NI1 1749 aa20.87■□□□□ 0.93
LDLR-213ENST00000560502 SPATA31E1Q6ZUB1 1445 aa20.87■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms