RNA–Protein interactions for RNA: ENST00000560402.1

SMAD3-214, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-214ENST00000560402 ZFYVE9O95405 1425 aa20.84■□□□□ 0.93
SMAD3-214ENST00000560402 PLEKHG1Q9ULL1 1385 aa20.81■□□□□ 0.92
SMAD3-214ENST00000560402 KCNA6P17658 529 aa20.8■□□□□ 0.92
SMAD3-214ENST00000560402 CHD2O14647 1828 aaKnown RBP20.8■□□□□ 0.92
SMAD3-214ENST00000560402 TMEM94Q12767 1356 aa20.79■□□□□ 0.92
SMAD3-214ENST00000560402 DIP2AQ14689 1571 aa20.79■□□□□ 0.92
SMAD3-214ENST00000560402 RIMS2Q9UQ26 1411 aa20.78■□□□□ 0.92
SMAD3-214ENST00000560402 HDGFP51858 240 aaKnown RBP20.77■□□□□ 0.92
SMAD3-214ENST00000560402 FAM135BQ49AJ0 1406 aa20.76■□□□□ 0.91
SMAD3-214ENST00000560402 SLC26A8Q96RN1 970 aa20.75■□□□□ 0.91
SMAD3-214ENST00000560402 SPHKAPQ2M3C7 1700 aa20.75■□□□□ 0.91
SMAD3-214ENST00000560402 ROBO1Q9Y6N7 1651 aa20.74■□□□□ 0.91
SMAD3-214ENST00000560402 PPP1R15AO75807 674 aaPredicted RBP20.73■□□□□ 0.91
SMAD3-214ENST00000560402 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.73■□□□□ 0.91
SMAD3-214ENST00000560402 NUP155O75694 1391 aa20.72■□□□□ 0.91
SMAD3-214ENST00000560402 PROSER2Q86WR7 435 aaPredicted RBP20.71■□□□□ 0.91
SMAD3-214ENST00000560402 BCANQ96GW7 911 aa20.71■□□□□ 0.91
SMAD3-214ENST00000560402 PHF23Q9BUL5 403 aaPredicted RBP20.71■□□□□ 0.91
SMAD3-214ENST00000560402 MSH6P52701 1360 aa20.71■□□□□ 0.91
SMAD3-214ENST00000560402 NCOA3Q9Y6Q9 1424 aa20.7■□□□□ 0.9
SMAD3-214ENST00000560402 PIK3R4Q99570 1358 aa20.69■□□□□ 0.9
SMAD3-214ENST00000560402 TRPM2O94759 1503 aa20.68■□□□□ 0.9
SMAD3-214ENST00000560402 RRBP1Q9P2E9 1410 aaKnown RBP20.68■□□□□ 0.9
SMAD3-214ENST00000560402 TBX22Q9Y458 520 aa20.67■□□□□ 0.9
SMAD3-214ENST00000560402 ADAMTS13Q76LX8 1427 aa20.67■□□□□ 0.9
SMAD3-214ENST00000560402 CHGAP10645 457 aaKnown RBP20.66■□□□□ 0.9
SMAD3-214ENST00000560402 ITGAEP38570 1179 aa20.65■□□□□ 0.9
SMAD3-214ENST00000560402 SENP3Q9H4L4 574 aaPredicted RBP20.65■□□□□ 0.9
SMAD3-214ENST00000560402 SETBP1Q9Y6X0 1596 aa20.63■□□□□ 0.89
SMAD3-214ENST00000560402 PHLPP1O60346 1717 aa20.63■□□□□ 0.89
SMAD3-214ENST00000560402 NRXN3Q9Y4C0 1643 aa20.61■□□□□ 0.89
SMAD3-214ENST00000560402 XRN1Q8IZH2 1706 aaKnown RBP20.6■□□□□ 0.89
SMAD3-214ENST00000560402 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.6■□□□□ 0.89
SMAD3-214ENST00000560402 KIF1BO60333 1816 aa20.6■□□□□ 0.89
SMAD3-214ENST00000560402 CLTCL1P53675 1640 aa20.59■□□□□ 0.89
SMAD3-214ENST00000560402 RBM33Q96EV2 1170 aaKnown RBP20.58■□□□□ 0.89
SMAD3-214ENST00000560402 NAIPQ13075 1403 aa20.58■□□□□ 0.88
SMAD3-214ENST00000560402 COL16A1Q07092 1604 aaPredicted RBP20.56■□□□□ 0.88
SMAD3-214ENST00000560402 PPARGC1BQ86YN6 1023 aaKnown RBP20.56■□□□□ 0.88
SMAD3-214ENST00000560402 SLAIN2Q9P270 581 aa20.56■□□□□ 0.88
SMAD3-214ENST00000560402 DCCP43146 1447 aa20.55■□□□□ 0.88
SMAD3-214ENST00000560402 NEXMIFQ5QGS0 1516 aa20.55■□□□□ 0.88
SMAD3-214ENST00000560402 AHDC1Q5TGY3 1603 aaPredicted RBP20.55■□□□□ 0.88
SMAD3-214ENST00000560402 NUTM2DQ5VT03 806 aaPredicted RBP20.54■□□□□ 0.88
SMAD3-214ENST00000560402 HFM1A2PYH4 1435 aa20.53■□□□□ 0.88
SMAD3-214ENST00000560402 PTPRUQ92729 1446 aa20.53■□□□□ 0.88
SMAD3-214ENST00000560402 JCADQ9P266 1359 aa20.52■□□□□ 0.88
SMAD3-214ENST00000560402 C14orf37Q86TY3 774 aa20.52■□□□□ 0.88
SMAD3-214ENST00000560402 CADPS2Q86UW7 1296 aa20.52■□□□□ 0.88
SMAD3-214ENST00000560402 C19orf44Q9H6X5 657 aa20.51■□□□□ 0.87
SMAD3-214ENST00000560402 SHPRHQ149N8 1683 aa20.51■□□□□ 0.87
SMAD3-214ENST00000560402 ZNF326Q5BKZ1 582 aaKnown RBP20.49■□□□□ 0.87
SMAD3-214ENST00000560402 AMOTL2Q9Y2J4 779 aa20.49■□□□□ 0.87
SMAD3-214ENST00000560402 ATF3P18847 181 aa20.48■□□□□ 0.87
SMAD3-214ENST00000560402 RGS17Q9UGC6 210 aaPredicted RBP20.47■□□□□ 0.87
SMAD3-214ENST00000560402 SETD1AO15047 1707 aaKnown RBP20.46■□□□□ 0.87
SMAD3-214ENST00000560402 NALCNQ8IZF0 1738 aa20.44■□□□□ 0.86
SMAD3-214ENST00000560402 NHSL1Q5SYE7 1610 aa20.44■□□□□ 0.86
SMAD3-214ENST00000560402 PPLO60437 1756 aa20.44■□□□□ 0.86
SMAD3-214ENST00000560402 ASXL1Q8IXJ9 1541 aa20.43■□□□□ 0.86
SMAD3-214ENST00000560402 SPATA31A6Q5VVP1 1343 aa20.43■□□□□ 0.86
SMAD3-214ENST00000560402 METP08581 1390 aa20.43■□□□□ 0.86
SMAD3-214ENST00000560402 ADGRL3Q9HAR2 1447 aa20.43■□□□□ 0.86
SMAD3-214ENST00000560402 PTCH1Q13635 1447 aa20.42■□□□□ 0.86
SMAD3-214ENST00000560402 PRAG1Q86YV5 1406 aa20.42■□□□□ 0.86
SMAD3-214ENST00000560402 MST1RQ04912 1400 aa20.41■□□□□ 0.86
SMAD3-214ENST00000560402 TRIM52Q96A61 297 aa20.39■□□□□ 0.85
SMAD3-214ENST00000560402 LRP6O75581 1613 aa20.38■□□□□ 0.85
SMAD3-214ENST00000560402 BRINP3Q76B58 766 aa20.38■□□□□ 0.85
SMAD3-214ENST00000560402 RPGRIP1LQ68CZ1 1315 aa20.37■□□□□ 0.85
SMAD3-214ENST00000560402 SLC4A1APQ9BWU0 796 aaKnown RBP20.37■□□□□ 0.85
SMAD3-214ENST00000560402 VGFO15240 615 aaPredicted RBP20.36■□□□□ 0.85
SMAD3-214ENST00000560402 POTEAQ6S8J7 498 aa20.36■□□□□ 0.85
SMAD3-214ENST00000560402 SETD5Q9C0A6 1442 aa20.36■□□□□ 0.85
SMAD3-214ENST00000560402 LAMC1P11047 1609 aa20.35■□□□□ 0.85
SMAD3-214ENST00000560402 IFT172Q9UG01 1749 aa20.33■□□□□ 0.85
SMAD3-214ENST00000560402 CCDC144AA2RUR9 1427 aa20.31■□□□□ 0.84
SMAD3-214ENST00000560402 MEX3CQ5U5Q3 659 aaKnown RBP20.31■□□□□ 0.84
SMAD3-214ENST00000560402 ACIN1Q9UKV3 1341 aaKnown RBP20.28■□□□□ 0.84
SMAD3-214ENST00000560402 ZNF772Q68DY9 489 aaPredicted RBP20.28■□□□□ 0.84
SMAD3-214ENST00000560402 C1orf167Q5SNV9 1468 aa20.28■□□□□ 0.84
SMAD3-214ENST00000560402 CDC42BPGQ6DT37 1551 aa20.28■□□□□ 0.84
SMAD3-214ENST00000560402 KNDC1Q76NI1 1749 aa20.27■□□□□ 0.84
SMAD3-214ENST00000560402 ROBO2Q9HCK4 1378 aa20.27■□□□□ 0.84
SMAD3-214ENST00000560402 SPATA31E1Q6ZUB1 1445 aa20.26■□□□□ 0.83
SMAD3-214ENST00000560402 LRRC59Q96AG4 307 aaKnown RBP20.25■□□□□ 0.83
SMAD3-214ENST00000560402 ANKRD30BQ9BXX2 1392 aa20.24■□□□□ 0.83
SMAD3-214ENST00000560402 PNPLA6Q8IY17 1366 aa20.22■□□□□ 0.83
SMAD3-214ENST00000560402 TECPR2O15040 1411 aa20.22■□□□□ 0.83
SMAD3-214ENST00000560402 CDK12Q9NYV4 1490 aaPredicted RBP20.22■□□□□ 0.83
SMAD3-214ENST00000560402 PIK3C2GO75747 1445 aa20.19■□□□□ 0.82
SMAD3-214ENST00000560402 FOXD1Q16676 465 aa20.19■□□□□ 0.82
SMAD3-214ENST00000560402 MPHOSPH9Q99550 1183 aa20.19■□□□□ 0.82
SMAD3-214ENST00000560402 COL22A1Q8NFW1 1626 aaPredicted RBP20.19■□□□□ 0.82
SMAD3-214ENST00000560402 NUTM2BA6NNL0 878 aaPredicted RBP20.17■□□□□ 0.82
SMAD3-214ENST00000560402 NUTM2EB1AL46 878 aaPredicted RBP20.17■□□□□ 0.82
SMAD3-214ENST00000560402 NUTM2AQ8IVF1 878 aaPredicted RBP20.17■□□□□ 0.82
SMAD3-214ENST00000560402 ADGRF5Q8IZF2 1346 aa20.17■□□□□ 0.82
SMAD3-214ENST00000560402 SOS2Q07890 1332 aaPredicted RBP20.16■□□□□ 0.82
SMAD3-214ENST00000560402 LRPPRCP42704 1394 aaKnown RBP20.16■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 114.5 ms