RNA–Protein interactions for RNA: ENST00000560213.1

LRRC28-217, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-217ENST00000560213 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.89■■□□□ 1.41
LRRC28-217ENST00000560213 PPP1R15AO75807 674 aaPredicted RBP23.88■■□□□ 1.41
LRRC28-217ENST00000560213 NEURL4Q96JN8 1562 aa23.86■■□□□ 1.41
LRRC28-217ENST00000560213 NPHP4O75161 1426 aaPredicted RBP23.86■■□□□ 1.41
LRRC28-217ENST00000560213 NUTM2DQ5VT03 806 aaPredicted RBP23.86■■□□□ 1.41
LRRC28-217ENST00000560213 MED14O60244 1454 aa23.86■■□□□ 1.41
LRRC28-217ENST00000560213 ZFYVE9O95405 1425 aa23.85■■□□□ 1.41
LRRC28-217ENST00000560213 RGL3Q3MIN7 710 aa23.85■■□□□ 1.41
LRRC28-217ENST00000560213 DHX57Q6P158 1386 aaKnown RBP23.85■■□□□ 1.41
LRRC28-217ENST00000560213 BCANQ96GW7 911 aa23.84■■□□□ 1.41
LRRC28-217ENST00000560213 RPGRIP1LQ68CZ1 1315 aa23.83■■□□□ 1.4
LRRC28-217ENST00000560213 IQGAP1P46940 1657 aa23.82■■□□□ 1.4
LRRC28-217ENST00000560213 SPATA31E1Q6ZUB1 1445 aa23.81■■□□□ 1.4
LRRC28-217ENST00000560213 SENP3Q9H4L4 574 aaPredicted RBP23.8■■□□□ 1.4
LRRC28-217ENST00000560213 NEXMIFQ5QGS0 1516 aa23.78■■□□□ 1.4
LRRC28-217ENST00000560213 PLEKHG1Q9ULL1 1385 aa23.78■■□□□ 1.4
LRRC28-217ENST00000560213 VGFO15240 615 aaPredicted RBP23.77■■□□□ 1.4
LRRC28-217ENST00000560213 PPLO60437 1756 aa23.74■■□□□ 1.39
LRRC28-217ENST00000560213 SLC26A8Q96RN1 970 aa23.74■■□□□ 1.39
LRRC28-217ENST00000560213 SIN3AQ96ST3 1273 aa23.72■■□□□ 1.39
LRRC28-217ENST00000560213 ZNF335Q9H4Z2 1342 aaPredicted RBP23.7■■□□□ 1.38
LRRC28-217ENST00000560213 NEUROD1Q13562 356 aa23.7■■□□□ 1.38
LRRC28-217ENST00000560213 TBX22Q9Y458 520 aa23.69■■□□□ 1.38
LRRC28-217ENST00000560213 IFT172Q9UG01 1749 aa23.68■■□□□ 1.38
LRRC28-217ENST00000560213 ADGRF5Q8IZF2 1346 aa23.66■■□□□ 1.38
LRRC28-217ENST00000560213 DCAF11Q8TEB1 546 aa23.66■■□□□ 1.38
LRRC28-217ENST00000560213 KDM2AQ9Y2K7 1162 aa23.66■■□□□ 1.38
LRRC28-217ENST00000560213 ADAMTS13Q76LX8 1427 aa23.66■■□□□ 1.38
LRRC28-217ENST00000560213 SETBP1Q9Y6X0 1596 aa23.65■■□□□ 1.38
LRRC28-217ENST00000560213 DIP2AQ14689 1571 aa23.63■■□□□ 1.37
LRRC28-217ENST00000560213 STAC3Q96MF2 364 aa23.63■■□□□ 1.37
LRRC28-217ENST00000560213 NRXN3Q9Y4C0 1643 aa23.62■■□□□ 1.37
LRRC28-217ENST00000560213 KCNA6P17658 529 aa23.61■■□□□ 1.37
LRRC28-217ENST00000560213 MYOM2P54296 1465 aa23.61■■□□□ 1.37
LRRC28-217ENST00000560213 LTBP4Q8N2S1 1624 aa23.6■■□□□ 1.37
LRRC28-217ENST00000560213 CCER1Q8TC90 406 aaPredicted RBP23.6■■□□□ 1.37
LRRC28-217ENST00000560213 PIK3R4Q99570 1358 aa23.58■■□□□ 1.37
LRRC28-217ENST00000560213 CHD2O14647 1828 aaKnown RBP23.57■■□□□ 1.36
LRRC28-217ENST00000560213 CERKQ8TCT0 537 aa23.57■■□□□ 1.36
LRRC28-217ENST00000560213 L3MBTL2Q969R5 705 aa23.57■■□□□ 1.36
LRRC28-217ENST00000560213 ALKQ9UM73 1620 aa23.57■■□□□ 1.36
LRRC28-217ENST00000560213 CPS1P31327 1500 aa23.57■■□□□ 1.36
LRRC28-217ENST00000560213 STRCP1A6NGW2 1772 aa23.57■■□□□ 1.36
LRRC28-217ENST00000560213 CLSPNQ9HAW4 1339 aa23.57■■□□□ 1.36
LRRC28-217ENST00000560213 PIK3C2GO75747 1445 aa23.56■■□□□ 1.36
LRRC28-217ENST00000560213 NRXN1Q9ULB1 1477 aa23.56■■□□□ 1.36
LRRC28-217ENST00000560213 METP08581 1390 aa23.55■■□□□ 1.36
LRRC28-217ENST00000560213 C14orf93Q9H972 538 aaKnown RBP23.54■■□□□ 1.36
LRRC28-217ENST00000560213 AMOTL2Q9Y2J4 779 aa23.53■■□□□ 1.36
LRRC28-217ENST00000560213 TONSLQ96HA7 1378 aa23.52■■□□□ 1.36
LRRC28-217ENST00000560213 CFAP70Q5T0N1 1121 aa23.52■■□□□ 1.36
LRRC28-217ENST00000560213 PROSER2Q86WR7 435 aaPredicted RBP23.52■■□□□ 1.36
LRRC28-217ENST00000560213 SETD1AO15047 1707 aaKnown RBP23.51■■□□□ 1.35
LRRC28-217ENST00000560213 NWD1Q149M9 1564 aa23.51■■□□□ 1.35
LRRC28-217ENST00000560213 PTPRUQ92729 1446 aa23.5■■□□□ 1.35
LRRC28-217ENST00000560213 TMEM132EQ6IEE7 984 aa23.48■■□□□ 1.35
LRRC28-217ENST00000560213 NKTRP30414 1462 aaKnown RBP23.48■■□□□ 1.35
LRRC28-217ENST00000560213 LRRC7Q96NW7 1537 aa23.48■■□□□ 1.35
LRRC28-217ENST00000560213 LAMC1P11047 1609 aa23.48■■□□□ 1.35
LRRC28-217ENST00000560213 RBM33Q96EV2 1170 aaKnown RBP23.44■■□□□ 1.34
LRRC28-217ENST00000560213 STK26Q9P289 416 aa23.44■■□□□ 1.34
LRRC28-217ENST00000560213 XRN1Q8IZH2 1706 aaKnown RBP23.44■■□□□ 1.34
LRRC28-217ENST00000560213 IQSEC2Q5JU85 1478 aa23.43■■□□□ 1.34
LRRC28-217ENST00000560213 PRAG1Q86YV5 1406 aa23.43■■□□□ 1.34
LRRC28-217ENST00000560213 TMEM94Q12767 1356 aa23.43■■□□□ 1.34
LRRC28-217ENST00000560213 LRPPRCP42704 1394 aaKnown RBP23.4■■□□□ 1.34
LRRC28-217ENST00000560213 ASXL1Q8IXJ9 1541 aa23.4■■□□□ 1.34
LRRC28-217ENST00000560213 C14orf37Q86TY3 774 aa23.4■■□□□ 1.34
LRRC28-217ENST00000560213 YTHDC2Q9H6S0 1430 aaKnown RBP23.4■■□□□ 1.34
LRRC28-217ENST00000560213 XIRP1Q702N8 1843 aaKnown RBP23.4■■□□□ 1.34
LRRC28-217ENST00000560213 TIMELESSQ9UNS1 1208 aa23.39■■□□□ 1.33
LRRC28-217ENST00000560213 KIAA1210Q9ULL0 1709 aa23.38■■□□□ 1.33
LRRC28-217ENST00000560213 ABCC11Q96J66 1382 aa23.38■■□□□ 1.33
LRRC28-217ENST00000560213 PTCH1Q13635 1447 aa23.36■■□□□ 1.33
LRRC28-217ENST00000560213 NCOA3Q9Y6Q9 1424 aa23.36■■□□□ 1.33
LRRC28-217ENST00000560213 ROBO2Q9HCK4 1378 aa23.36■■□□□ 1.33
LRRC28-217ENST00000560213 ADGRB1O14514 1584 aa23.35■■□□□ 1.33
LRRC28-217ENST00000560213 NBPF1Q3BBV0 1214 aa23.35■■□□□ 1.33
LRRC28-217ENST00000560213 NBPF8Q3BBV2 869 aa23.35■■□□□ 1.33
LRRC28-217ENST00000560213 UBAP1LF5GYI3 381 aa23.34■■□□□ 1.33
LRRC28-217ENST00000560213 MSH6P52701 1360 aa23.34■■□□□ 1.33
LRRC28-217ENST00000560213 TECPR2O15040 1411 aa23.33■■□□□ 1.33
LRRC28-217ENST00000560213 KNDC1Q76NI1 1749 aa23.33■■□□□ 1.33
LRRC28-217ENST00000560213 TOM1O60784 492 aa23.33■■□□□ 1.33
LRRC28-217ENST00000560213 SIRT1Q96EB6 747 aa23.33■■□□□ 1.33
LRRC28-217ENST00000560213 TRAK1Q9UPV9 953 aa23.33■■□□□ 1.33
LRRC28-217ENST00000560213 WAPLQ7Z5K2 1190 aa23.32■■□□□ 1.32
LRRC28-217ENST00000560213 C19orf44Q9H6X5 657 aa23.32■■□□□ 1.32
LRRC28-217ENST00000560213 TRPM1Q7Z4N2 1603 aa23.3■■□□□ 1.32
LRRC28-217ENST00000560213 FBXO41Q8TF61 875 aa23.3■■□□□ 1.32
LRRC28-217ENST00000560213 POGKQ9P215 609 aa23.29■■□□□ 1.32
LRRC28-217ENST00000560213 ROCK2O75116 1388 aaKnown RBP23.28■■□□□ 1.32
LRRC28-217ENST00000560213 FAM135BQ49AJ0 1406 aa23.28■■□□□ 1.32
LRRC28-217ENST00000560213 PRAM1Q96QH2 718 aa23.28■■□□□ 1.32
LRRC28-217ENST00000560213 ATF3P18847 181 aa23.27■■□□□ 1.32
LRRC28-217ENST00000560213 DLC1Q96QB1 1528 aa23.27■■□□□ 1.32
LRRC28-217ENST00000560213 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.26■■□□□ 1.31
LRRC28-217ENST00000560213 CADPS2Q86UW7 1296 aa23.26■■□□□ 1.31
LRRC28-217ENST00000560213 PLEKHH1Q9ULM0 1364 aa23.26■■□□□ 1.31
LRRC28-217ENST00000560213 ADGRL3Q9HAR2 1447 aa23.25■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms