RNA–Protein interactions for RNA: ENST00000559604.1

KNSTRN-208, Transcript of kinetochore localized astrin (SPAG5) binding protein, human

TSL 4

Gene KNSTRN, Length 535 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
KNSTRN-208	ENST00000559604	SLC26A8	Q96RN1	970 aa		29.09	■■■□□ 2.25
KNSTRN-208	ENST00000559604	RIMS2	Q9UQ26	1411 aa		29.06	■■■□□ 2.24
KNSTRN-208	ENST00000559604	KCNA6	P17658	529 aa		29.03	■■■□□ 2.24
KNSTRN-208	ENST00000559604	PLEKHG1	Q9ULL1	1385 aa		29.02	■■■□□ 2.24
KNSTRN-208	ENST00000559604	CHGA	P10645	457 aa	Known RBP	29.01	■■■□□ 2.23
KNSTRN-208	ENST00000559604	ILDR2	Q71H61	639 aa		29	■■■□□ 2.23
KNSTRN-208	ENST00000559604	BCAN	Q96GW7	911 aa		29	■■■□□ 2.23
KNSTRN-208	ENST00000559604	NWD1	Q149M9	1564 aa		29	■■■□□ 2.23
KNSTRN-208	ENST00000559604	HDGF	P51858	240 aa	Known RBP	28.99	■■■□□ 2.23
KNSTRN-208	ENST00000559604	SENP3	Q9H4L4	574 aa	Predicted RBP	28.99	■■■□□ 2.23
KNSTRN-208	ENST00000559604	NAIP	Q13075	1403 aa		28.99	■■■□□ 2.23
KNSTRN-208	ENST00000559604	SPHKAP	Q2M3C7	1700 aa		28.98	■■■□□ 2.23
KNSTRN-208	ENST00000559604	PPP1R15A	O75807	674 aa	Predicted RBP	28.98	■■■□□ 2.23
KNSTRN-208	ENST00000559604	TMEM94	Q12767	1356 aa		28.98	■■■□□ 2.23
KNSTRN-208	ENST00000559604	CHD2	O14647	1828 aa	Known RBP	28.95	■■■□□ 2.23
KNSTRN-208	ENST00000559604	NKTR	P30414	1462 aa	Known RBP	28.95	■■■□□ 2.22
KNSTRN-208	ENST00000559604	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	28.94	■■■□□ 2.22
KNSTRN-208	ENST00000559604	NUTM2D	Q5VT03	806 aa	Predicted RBP	28.93	■■■□□ 2.22
KNSTRN-208	ENST00000559604	PROSER2	Q86WR7	435 aa	Predicted RBP	28.93	■■■□□ 2.22
KNSTRN-208	ENST00000559604	RBM33	Q96EV2	1170 aa	Known RBP	28.91	■■■□□ 2.22
KNSTRN-208	ENST00000559604	ADAMTS13	Q76LX8	1427 aa		28.9	■■■□□ 2.22
KNSTRN-208	ENST00000559604	TBX22	Q9Y458	520 aa		28.9	■■■□□ 2.22
KNSTRN-208	ENST00000559604	HFM1	A2PYH4	1435 aa		28.89	■■■□□ 2.22
KNSTRN-208	ENST00000559604	MED1	Q15648	1581 aa	Predicted RBP	28.88	■■■□□ 2.21
KNSTRN-208	ENST00000559604	DIP2A	Q14689	1571 aa		28.86	■■■□□ 2.21
KNSTRN-208	ENST00000559604	TRPM2	O94759	1503 aa		28.84	■■■□□ 2.21
KNSTRN-208	ENST00000559604	CLTCL1	P53675	1640 aa		28.83	■■■□□ 2.21
KNSTRN-208	ENST00000559604	FAM135B	Q49AJ0	1406 aa		28.83	■■■□□ 2.21
KNSTRN-208	ENST00000559604	PIK3R4	Q99570	1358 aa		28.79	■■■□□ 2.2
KNSTRN-208	ENST00000559604	TRIM52	Q96A61	297 aa		28.79	■■■□□ 2.2
KNSTRN-208	ENST00000559604	NRXN3	Q9Y4C0	1643 aa		28.79	■■■□□ 2.2
KNSTRN-208	ENST00000559604	MSH6	P52701	1360 aa		28.78	■■■□□ 2.2
KNSTRN-208	ENST00000559604	ROBO1	Q9Y6N7	1651 aa		28.78	■■■□□ 2.2
KNSTRN-208	ENST00000559604	KIF1B	O60333	1816 aa		28.76	■■■□□ 2.19
KNSTRN-208	ENST00000559604	SOCS7	O14512	581 aa		28.76	■■■□□ 2.19
KNSTRN-208	ENST00000559604	ZNF326	Q5BKZ1	582 aa	Known RBP	28.76	■■■□□ 2.19
KNSTRN-208	ENST00000559604	SETBP1	Q9Y6X0	1596 aa		28.75	■■■□□ 2.19
KNSTRN-208	ENST00000559604	PTPRU	Q92729	1446 aa		28.74	■■■□□ 2.19
KNSTRN-208	ENST00000559604	NEXMIF	Q5QGS0	1516 aa		28.74	■■■□□ 2.19
KNSTRN-208	ENST00000559604	NCOA3	Q9Y6Q9	1424 aa		28.73	■■■□□ 2.19
KNSTRN-208	ENST00000559604	SLC4A1AP	Q9BWU0	796 aa	Known RBP	28.71	■■■□□ 2.19
KNSTRN-208	ENST00000559604	SLAIN2	Q9P270	581 aa		28.7	■■■□□ 2.18
KNSTRN-208	ENST00000559604	AMOTL2	Q9Y2J4	779 aa		28.7	■■■□□ 2.18
KNSTRN-208	ENST00000559604	XRN1	Q8IZH2	1706 aa	Known RBP	28.68	■■■□□ 2.18
KNSTRN-208	ENST00000559604	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	28.67	■■■□□ 2.18
KNSTRN-208	ENST00000559604	C14orf37	Q86TY3	774 aa		28.65	■■■□□ 2.18
KNSTRN-208	ENST00000559604	MET	P08581	1390 aa		28.64	■■■□□ 2.18
KNSTRN-208	ENST00000559604	C19orf44	Q9H6X5	657 aa		28.63	■■■□□ 2.17
KNSTRN-208	ENST00000559604	PHF23	Q9BUL5	403 aa	Predicted RBP	28.62	■■■□□ 2.17
KNSTRN-208	ENST00000559604	FOXD1	Q16676	465 aa		28.6	■■■□□ 2.17
KNSTRN-208	ENST00000559604	PHLPP1	O60346	1717 aa		28.6	■■■□□ 2.17
KNSTRN-208	ENST00000559604	CADPS2	Q86UW7	1296 aa		28.58	■■■□□ 2.17
KNSTRN-208	ENST00000559604	PPL	O60437	1756 aa		28.57	■■■□□ 2.16
KNSTRN-208	ENST00000559604	SETD1A	O15047	1707 aa	Known RBP	28.56	■■■□□ 2.16
KNSTRN-208	ENST00000559604	ATF3	P18847	181 aa		28.56	■■■□□ 2.16
KNSTRN-208	ENST00000559604	RPGRIP1L	Q68CZ1	1315 aa		28.55	■■■□□ 2.16
KNSTRN-208	ENST00000559604	VGF	O15240	615 aa	Predicted RBP	28.55	■■■□□ 2.16
KNSTRN-208	ENST00000559604	MPHOSPH9	Q99550	1183 aa		28.53	■■■□□ 2.16
KNSTRN-208	ENST00000559604	COL16A1	Q07092	1604 aa	Predicted RBP	28.53	■■■□□ 2.16
KNSTRN-208	ENST00000559604	DCC	P43146	1447 aa		28.52	■■■□□ 2.16
KNSTRN-208	ENST00000559604	RGS17	Q9UGC6	210 aa	Predicted RBP	28.5	■■■□□ 2.15
KNSTRN-208	ENST00000559604	CCDC144A	A2RUR9	1427 aa		28.49	■■■□□ 2.15
KNSTRN-208	ENST00000559604	AHDC1	Q5TGY3	1603 aa	Predicted RBP	28.48	■■■□□ 2.15
KNSTRN-208	ENST00000559604	NALCN	Q8IZF0	1738 aa		28.47	■■■□□ 2.15
KNSTRN-208	ENST00000559604	SETD5	Q9C0A6	1442 aa		28.47	■■■□□ 2.15
KNSTRN-208	ENST00000559604	JCAD	Q9P266	1359 aa		28.47	■■■□□ 2.15
KNSTRN-208	ENST00000559604	ADGRL3	Q9HAR2	1447 aa		28.46	■■■□□ 2.15
KNSTRN-208	ENST00000559604	MST1R	Q04912	1400 aa		28.45	■■■□□ 2.15
KNSTRN-208	ENST00000559604	SPATA31E1	Q6ZUB1	1445 aa		28.45	■■■□□ 2.15
KNSTRN-208	ENST00000559604	BRINP3	Q76B58	766 aa		28.45	■■■□□ 2.14
KNSTRN-208	ENST00000559604	PTCH1	Q13635	1447 aa		28.43	■■■□□ 2.14
KNSTRN-208	ENST00000559604	IFT172	Q9UG01	1749 aa		28.43	■■■□□ 2.14
KNSTRN-208	ENST00000559604	ROBO2	Q9HCK4	1378 aa		28.41	■■■□□ 2.14
KNSTRN-208	ENST00000559604	ASXL1	Q8IXJ9	1541 aa		28.41	■■■□□ 2.14
KNSTRN-208	ENST00000559604	PRAG1	Q86YV5	1406 aa		28.41	■■■□□ 2.14
KNSTRN-208	ENST00000559604	ACIN1	Q9UKV3	1341 aa	Known RBP	28.41	■■■□□ 2.14
KNSTRN-208	ENST00000559604	ADGRF5	Q8IZF2	1346 aa		28.4	■■■□□ 2.14
KNSTRN-208	ENST00000559604	RGL3	Q3MIN7	710 aa		28.39	■■■□□ 2.14
KNSTRN-208	ENST00000559604	SHPRH	Q149N8	1683 aa		28.37	■■■□□ 2.13
KNSTRN-208	ENST00000559604	RAB3GAP2	Q9H2M9	1393 aa		28.37	■■■□□ 2.13
KNSTRN-208	ENST00000559604	NHSL1	Q5SYE7	1610 aa		28.36	■■■□□ 2.13
KNSTRN-208	ENST00000559604	ANKRD30B	Q9BXX2	1392 aa		28.35	■■■□□ 2.13
KNSTRN-208	ENST00000559604	LRP6	O75581	1613 aa		28.33	■■■□□ 2.13
KNSTRN-208	ENST00000559604	POTEA	Q6S8J7	498 aa		28.33	■■■□□ 2.13
KNSTRN-208	ENST00000559604	SPATA31A6	Q5VVP1	1343 aa		28.32	■■■□□ 2.12
KNSTRN-208	ENST00000559604	C1orf167	Q5SNV9	1468 aa		28.3	■■■□□ 2.12
KNSTRN-208	ENST00000559604	PIK3C2G	O75747	1445 aa		28.28	■■■□□ 2.12
KNSTRN-208	ENST00000559604	DDX17	Q92841	729 aa	Known RBP	28.26	■■■□□ 2.11
KNSTRN-208	ENST00000559604	TECPR2	O15040	1411 aa		28.25	■■■□□ 2.11
KNSTRN-208	ENST00000559604	LRPPRC	P42704	1394 aa	Known RBP	28.24	■■■□□ 2.11
KNSTRN-208	ENST00000559604	LAMC1	P11047	1609 aa		28.23	■■■□□ 2.11
KNSTRN-208	ENST00000559604	KNDC1	Q76NI1	1749 aa		28.23	■■■□□ 2.11
KNSTRN-208	ENST00000559604	TMEM132E	Q6IEE7	984 aa		28.22	■■■□□ 2.11
KNSTRN-208	ENST00000559604	STK26	Q9P289	416 aa		28.22	■■■□□ 2.11
KNSTRN-208	ENST00000559604	CDC42BPG	Q6DT37	1551 aa		28.21	■■■□□ 2.11
KNSTRN-208	ENST00000559604	LRRC59	Q96AG4	307 aa	Known RBP	28.21	■■■□□ 2.11
KNSTRN-208	ENST00000559604	ORAI2	Q96SN7	254 aa		28.21	■■■□□ 2.11
KNSTRN-208	ENST00000559604	NRXN1	Q9ULB1	1477 aa		28.21	■■■□□ 2.11
KNSTRN-208	ENST00000559604	MEX3C	Q5U5Q3	659 aa	Known RBP	28.2	■■■□□ 2.1
KNSTRN-208	ENST00000559604	ABCC11	Q96J66	1382 aa		28.2	■■■□□ 2.1

Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms