RNA–Protein interactions for RNA: ENST00000559494.1

TSPAN3-207, Transcript of tetraspanin 3, humanhuman

TSL 5 BASIC

Gene TSPAN3, Length 1,326 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-207ENST00000559494 CCDC144AA2RUR9 1427 aa29.83■■■□□ 2.37
TSPAN3-207ENST00000559494 KIF1BO60333 1816 aa29.82■■■□□ 2.36
TSPAN3-207ENST00000559494 ZNF326Q5BKZ1 582 aaKnown RBP29.82■■■□□ 2.36
TSPAN3-207ENST00000559494 HDGFP51858 240 aaKnown RBP29.81■■■□□ 2.36
TSPAN3-207ENST00000559494 NUTM2DQ5VT03 806 aaPredicted RBP29.81■■■□□ 2.36
TSPAN3-207ENST00000559494 ABCF1Q8NE71 845 aaKnown RBP eCLIP29.79■■■□□ 2.36
TSPAN3-207ENST00000559494 IQGAP1P46940 1657 aa29.75■■■□□ 2.35
TSPAN3-207ENST00000559494 PPP1R15AO75807 674 aaPredicted RBP29.74■■■□□ 2.35
TSPAN3-207ENST00000559494 RGL3Q3MIN7 710 aa29.73■■■□□ 2.35
TSPAN3-207ENST00000559494 SENP3Q9H4L4 574 aaPredicted RBP29.73■■■□□ 2.35
TSPAN3-207ENST00000559494 SPATA31E1Q6ZUB1 1445 aa29.73■■■□□ 2.35
TSPAN3-207ENST00000559494 RPGRIP1LQ68CZ1 1315 aa29.7■■■□□ 2.35
TSPAN3-207ENST00000559494 DHX57Q6P158 1386 aaKnown RBP29.7■■■□□ 2.35
TSPAN3-207ENST00000559494 PLEKHG1Q9ULL1 1385 aa29.7■■■□□ 2.35
TSPAN3-207ENST00000559494 BCANQ96GW7 911 aa29.7■■■□□ 2.34
TSPAN3-207ENST00000559494 ZNF335Q9H4Z2 1342 aaPredicted RBP29.7■■■□□ 2.34
TSPAN3-207ENST00000559494 NEXMIFQ5QGS0 1516 aa29.69■■■□□ 2.34
TSPAN3-207ENST00000559494 ILDR1Q86SU0 546 aaPredicted RBP29.69■■■□□ 2.34
TSPAN3-207ENST00000559494 SLC26A8Q96RN1 970 aa29.69■■■□□ 2.34
TSPAN3-207ENST00000559494 VGFO15240 615 aaPredicted RBP29.64■■■□□ 2.34
TSPAN3-207ENST00000559494 LTBP4Q8N2S1 1624 aa29.61■■■□□ 2.33
TSPAN3-207ENST00000559494 TBX22Q9Y458 520 aa29.61■■■□□ 2.33
TSPAN3-207ENST00000559494 ADAMTS13Q76LX8 1427 aa29.6■■■□□ 2.33
TSPAN3-207ENST00000559494 PPLO60437 1756 aa29.59■■■□□ 2.33
TSPAN3-207ENST00000559494 SIN3AQ96ST3 1273 aa29.57■■■□□ 2.32
TSPAN3-207ENST00000559494 ADGRF5Q8IZF2 1346 aa29.57■■■□□ 2.32
TSPAN3-207ENST00000559494 CERKQ8TCT0 537 aa29.55■■■□□ 2.32
TSPAN3-207ENST00000559494 SETBP1Q9Y6X0 1596 aa29.53■■■□□ 2.32
TSPAN3-207ENST00000559494 NRXN3Q9Y4C0 1643 aa29.53■■■□□ 2.32
TSPAN3-207ENST00000559494 IFT172Q9UG01 1749 aa29.52■■■□□ 2.32
TSPAN3-207ENST00000559494 KCNA6P17658 529 aa29.52■■■□□ 2.32
TSPAN3-207ENST00000559494 STRCP1A6NGW2 1772 aa29.52■■■□□ 2.32
TSPAN3-207ENST00000559494 NEUROD1Q13562 356 aa29.48■■■□□ 2.31
TSPAN3-207ENST00000559494 DCAF11Q8TEB1 546 aa29.48■■■□□ 2.31
TSPAN3-207ENST00000559494 DIP2AQ14689 1571 aa29.47■■■□□ 2.31
TSPAN3-207ENST00000559494 KDM2AQ9Y2K7 1162 aa29.46■■■□□ 2.31
TSPAN3-207ENST00000559494 METP08581 1390 aa29.45■■■□□ 2.31
TSPAN3-207ENST00000559494 CPS1P31327 1500 aa29.45■■■□□ 2.31
TSPAN3-207ENST00000559494 PIK3R4Q99570 1358 aa29.45■■■□□ 2.3
TSPAN3-207ENST00000559494 CHD2O14647 1828 aaKnown RBP29.44■■■□□ 2.3
TSPAN3-207ENST00000559494 ALKQ9UM73 1620 aa29.43■■■□□ 2.3
TSPAN3-207ENST00000559494 PTPRUQ92729 1446 aa29.43■■■□□ 2.3
TSPAN3-207ENST00000559494 MYOM2P54296 1465 aa29.42■■■□□ 2.3
TSPAN3-207ENST00000559494 STAC3Q96MF2 364 aa29.42■■■□□ 2.3
TSPAN3-207ENST00000559494 AMOTL2Q9Y2J4 779 aa29.41■■■□□ 2.3
TSPAN3-207ENST00000559494 NRXN1Q9ULB1 1477 aa29.4■■■□□ 2.3
TSPAN3-207ENST00000559494 PIK3C2GO75747 1445 aa29.4■■■□□ 2.3
TSPAN3-207ENST00000559494 LRRC7Q96NW7 1537 aa29.4■■■□□ 2.3
TSPAN3-207ENST00000559494 NWD1Q149M9 1564 aa29.38■■■□□ 2.29
TSPAN3-207ENST00000559494 PROSER2Q86WR7 435 aaPredicted RBP29.38■■■□□ 2.29
TSPAN3-207ENST00000559494 L3MBTL2Q969R5 705 aa29.38■■■□□ 2.29
TSPAN3-207ENST00000559494 C14orf93Q9H972 538 aaKnown RBP29.38■■■□□ 2.29
TSPAN3-207ENST00000559494 SETD1AO15047 1707 aaKnown RBP29.37■■■□□ 2.29
TSPAN3-207ENST00000559494 CFAP70Q5T0N1 1121 aa29.36■■■□□ 2.29
TSPAN3-207ENST00000559494 RBM33Q96EV2 1170 aaKnown RBP29.35■■■□□ 2.29
TSPAN3-207ENST00000559494 IQSEC2Q5JU85 1478 aa29.34■■■□□ 2.29
TSPAN3-207ENST00000559494 NKTRP30414 1462 aaKnown RBP29.32■■■□□ 2.28
TSPAN3-207ENST00000559494 TMEM132EQ6IEE7 984 aa29.32■■■□□ 2.28
TSPAN3-207ENST00000559494 TMEM94Q12767 1356 aa29.31■■■□□ 2.28
TSPAN3-207ENST00000559494 XRN1Q8IZH2 1706 aaKnown RBP29.28■■■□□ 2.28
TSPAN3-207ENST00000559494 XIRP1Q702N8 1843 aaKnown RBP29.28■■■□□ 2.28
TSPAN3-207ENST00000559494 STK26Q9P289 416 aa29.25■■■□□ 2.27
TSPAN3-207ENST00000559494 ASXL1Q8IXJ9 1541 aa29.25■■■□□ 2.27
TSPAN3-207ENST00000559494 CCER1Q8TC90 406 aaPredicted RBP29.24■■■□□ 2.27
TSPAN3-207ENST00000559494 FBXO41Q8TF61 875 aa29.24■■■□□ 2.27
TSPAN3-207ENST00000559494 CLSPNQ9HAW4 1339 aa29.24■■■□□ 2.27
TSPAN3-207ENST00000559494 LRPPRCP42704 1394 aaKnown RBP29.22■■■□□ 2.27
TSPAN3-207ENST00000559494 PRAG1Q86YV5 1406 aa29.21■■■□□ 2.27
TSPAN3-207ENST00000559494 UBAP1LF5GYI3 381 aa29.2■■■□□ 2.27
TSPAN3-207ENST00000559494 TONSLQ96HA7 1378 aa29.2■■■□□ 2.27
TSPAN3-207ENST00000559494 ABCC11Q96J66 1382 aa29.2■■■□□ 2.27
TSPAN3-207ENST00000559494 ROBO2Q9HCK4 1378 aa29.2■■■□□ 2.27
TSPAN3-207ENST00000559494 LAMC1P11047 1609 aa29.2■■■□□ 2.27
TSPAN3-207ENST00000559494 YTHDC2Q9H6S0 1430 aaKnown RBP29.2■■■□□ 2.26
TSPAN3-207ENST00000559494 NCOA3Q9Y6Q9 1424 aa29.2■■■□□ 2.26
TSPAN3-207ENST00000559494 TOM1O60784 492 aa29.17■■■□□ 2.26
TSPAN3-207ENST00000559494 ADGRB1O14514 1584 aa29.16■■■□□ 2.26
TSPAN3-207ENST00000559494 PTCH1Q13635 1447 aa29.16■■■□□ 2.26
TSPAN3-207ENST00000559494 NBPF1Q3BBV0 1214 aa29.16■■■□□ 2.26
TSPAN3-207ENST00000559494 C14orf37Q86TY3 774 aa29.16■■■□□ 2.26
TSPAN3-207ENST00000559494 TECPR2O15040 1411 aa29.15■■■□□ 2.26
TSPAN3-207ENST00000559494 NBPF8Q3BBV2 869 aa29.15■■■□□ 2.26
TSPAN3-207ENST00000559494 WAPLQ7Z5K2 1190 aa29.14■■■□□ 2.25
TSPAN3-207ENST00000559494 C19orf44Q9H6X5 657 aa29.14■■■□□ 2.25
TSPAN3-207ENST00000559494 SIRT1Q96EB6 747 aa29.13■■■□□ 2.25
TSPAN3-207ENST00000559494 MSH6P52701 1360 aa29.12■■■□□ 2.25
TSPAN3-207ENST00000559494 KIAA1210Q9ULL0 1709 aa29.1■■■□□ 2.25
TSPAN3-207ENST00000559494 TRAK1Q9UPV9 953 aa29.1■■■□□ 2.25
TSPAN3-207ENST00000559494 PLEKHH1Q9ULM0 1364 aa29.09■■■□□ 2.25
TSPAN3-207ENST00000559494 KNDC1Q76NI1 1749 aa29.08■■■□□ 2.25
TSPAN3-207ENST00000559494 PIP4K2BP78356 416 aa29.07■■■□□ 2.24
TSPAN3-207ENST00000559494 SIPA1L2Q9P2F8 1722 aaPredicted RBP29.06■■■□□ 2.24
TSPAN3-207ENST00000559494 TIMELESSQ9UNS1 1208 aa29.06■■■□□ 2.24
TSPAN3-207ENST00000559494 FAM135BQ49AJ0 1406 aa29.06■■■□□ 2.24
TSPAN3-207ENST00000559494 ADGRL3Q9HAR2 1447 aa29.05■■■□□ 2.24
TSPAN3-207ENST00000559494 ATF3P18847 181 aa29.04■■■□□ 2.24
TSPAN3-207ENST00000559494 PRAM1Q96QH2 718 aa29.04■■■□□ 2.24
TSPAN3-207ENST00000559494 CADPS2Q86UW7 1296 aa29.03■■■□□ 2.24
TSPAN3-207ENST00000559494 DLC1Q96QB1 1528 aa29.03■■■□□ 2.24
TSPAN3-207ENST00000559494 SLAIN2Q9P270 581 aa29.02■■■□□ 2.24
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms