RNA–Protein interactions for RNA: ENST00000559339.1

SNX1-205, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 101 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-205ENST00000559339 SLC26A8Q96RN1 970 aa6.46□□□□□ -1.38
SNX1-205ENST00000559339 MPHOSPH9Q99550 1183 aa6.46□□□□□ -1.38
SNX1-205ENST00000559339 PIK3C2BO00750 1634 aa6.46□□□□□ -1.38
SNX1-205ENST00000559339 IQSEC2Q5JU85 1478 aa6.46□□□□□ -1.38
SNX1-205ENST00000559339 KDM5AP29375 1690 aaKnown RBP6.45□□□□□ -1.38
SNX1-205ENST00000559339 ADGRB3O60242 1522 aa6.45□□□□□ -1.38
SNX1-205ENST00000559339 CPS1P31327 1500 aa6.45□□□□□ -1.38
SNX1-205ENST00000559339 NEURL4Q96JN8 1562 aa6.45□□□□□ -1.38
SNX1-205ENST00000559339 RIMS2Q9UQ26 1411 aa6.45□□□□□ -1.38
SNX1-205ENST00000559339 UBAP1LF5GYI3 381 aa6.45□□□□□ -1.38
SNX1-205ENST00000559339 KCNA6P17658 529 aa6.45□□□□□ -1.38
SNX1-205ENST00000559339 NUTM2DQ5VT03 806 aaPredicted RBP6.45□□□□□ -1.38
SNX1-205ENST00000559339 LTBP4Q8N2S1 1624 aa6.45□□□□□ -1.38
SNX1-205ENST00000559339 E9PCH4 1651 aa6.45□□□□□ -1.38
SNX1-205ENST00000559339 IQGAP1P46940 1657 aa6.45□□□□□ -1.38
SNX1-205ENST00000559339 POLR1AO95602 1720 aaPredicted RBP6.45□□□□□ -1.38
SNX1-205ENST00000559339 PLEKHG1Q9ULL1 1385 aa6.44□□□□□ -1.38
SNX1-205ENST00000559339 VGFO15240 615 aaPredicted RBP6.44□□□□□ -1.38
SNX1-205ENST00000559339 HRCP23327 699 aa6.44□□□□□ -1.38
SNX1-205ENST00000559339 CNKSR2Q8WXI2 1034 aa6.44□□□□□ -1.38
SNX1-205ENST00000559339 TBX22Q9Y458 520 aa6.44□□□□□ -1.38
SNX1-205ENST00000559339 RPGRIP1LQ68CZ1 1315 aa6.44□□□□□ -1.38
SNX1-205ENST00000559339 RAB3GAP2Q9H2M9 1393 aa6.44□□□□□ -1.38
SNX1-205ENST00000559339 CCDC144AA2RUR9 1427 aa6.43□□□□□ -1.38
SNX1-205ENST00000559339 ZFYVE9O95405 1425 aa6.43□□□□□ -1.38
SNX1-205ENST00000559339 TRPM2O94759 1503 aa6.42□□□□□ -1.38
SNX1-205ENST00000559339 PIP4K2BP78356 416 aa6.42□□□□□ -1.38
SNX1-205ENST00000559339 C14orf37Q86TY3 774 aa6.42□□□□□ -1.38
SNX1-205ENST00000559339 PROSER2Q86WR7 435 aaPredicted RBP6.42□□□□□ -1.38
SNX1-205ENST00000559339 TMEM131LA2VDJ0 1609 aa6.42□□□□□ -1.38
SNX1-205ENST00000559339 MAPK8IP2Q13387 824 aaPredicted RBP6.41□□□□□ -1.38
SNX1-205ENST00000559339 RGL3Q3MIN7 710 aa6.41□□□□□ -1.38
SNX1-205ENST00000559339 PIK3R4Q99570 1358 aa6.41□□□□□ -1.38
SNX1-205ENST00000559339 SPHKAPQ2M3C7 1700 aa6.4□□□□□ -1.38
SNX1-205ENST00000559339 MSH6P52701 1360 aa6.4□□□□□ -1.39
SNX1-205ENST00000559339 TMEM94Q12767 1356 aa6.4□□□□□ -1.39
SNX1-205ENST00000559339 LRRC7Q96NW7 1537 aa6.4□□□□□ -1.39
SNX1-205ENST00000559339 AMOTL2Q9Y2J4 779 aa6.39□□□□□ -1.39
SNX1-205ENST00000559339 ANKRD30BQ9BXX2 1392 aa6.39□□□□□ -1.39
SNX1-205ENST00000559339 NKTRP30414 1462 aaKnown RBP6.39□□□□□ -1.39
SNX1-205ENST00000559339 ATF3P18847 181 aa6.38□□□□□ -1.39
SNX1-205ENST00000559339 CADPS2Q86UW7 1296 aa6.38□□□□□ -1.39
SNX1-205ENST00000559339 RBM33Q96EV2 1170 aaKnown RBP6.38□□□□□ -1.39
SNX1-205ENST00000559339 C19orf44Q9H6X5 657 aa6.38□□□□□ -1.39
SNX1-205ENST00000559339 ADAMTS13Q76LX8 1427 aa6.38□□□□□ -1.39
SNX1-205ENST00000559339 NCOA3Q9Y6Q9 1424 aa6.38□□□□□ -1.39
SNX1-205ENST00000559339 DIP2AQ14689 1571 aa6.38□□□□□ -1.39
SNX1-205ENST00000559339 CLTCL1P53675 1640 aa6.38□□□□□ -1.39
SNX1-205ENST00000559339 NPM3O75607 178 aaKnown RBP6.37□□□□□ -1.39
SNX1-205ENST00000559339 STAC3Q96MF2 364 aa6.37□□□□□ -1.39
SNX1-205ENST00000559339 METP08581 1390 aa6.36□□□□□ -1.39
SNX1-205ENST00000559339 TRIM26Q12899 539 aaPredicted RBP6.36□□□□□ -1.39
SNX1-205ENST00000559339 SLAIN2Q9P270 581 aa6.36□□□□□ -1.39
SNX1-205ENST00000559339 KIF1BO60333 1816 aa6.36□□□□□ -1.39
SNX1-205ENST00000559339 SETBP1Q9Y6X0 1596 aa6.35□□□□□ -1.39
SNX1-205ENST00000559339 NEXMIFQ5QGS0 1516 aa6.35□□□□□ -1.39
SNX1-205ENST00000559339 SPATA31E1Q6ZUB1 1445 aa6.35□□□□□ -1.39
SNX1-205ENST00000559339 ADGRF5Q8IZF2 1346 aa6.35□□□□□ -1.39
SNX1-205ENST00000559339 MYO5BQ9ULV0 1848 aa6.35□□□□□ -1.39
SNX1-205ENST00000559339 HSPA1LP34931 641 aa6.35□□□□□ -1.39
SNX1-205ENST00000559339 DCAF11Q8TEB1 546 aa6.35□□□□□ -1.39
SNX1-205ENST00000559339 NWD1Q149M9 1564 aa6.35□□□□□ -1.39
SNX1-205ENST00000559339 FAM135BQ49AJ0 1406 aa6.34□□□□□ -1.39
SNX1-205ENST00000559339 KDM2AQ9Y2K7 1162 aa6.34□□□□□ -1.39
SNX1-205ENST00000559339 STK26Q9P289 416 aa6.33□□□□□ -1.4
SNX1-205ENST00000559339 STRCP1A6NGW2 1772 aa6.33□□□□□ -1.4
SNX1-205ENST00000559339 DCCP43146 1447 aa6.33□□□□□ -1.4
SNX1-205ENST00000559339 PTPRUQ92729 1446 aa6.33□□□□□ -1.4
SNX1-205ENST00000559339 TMEM132EQ6IEE7 984 aa6.32□□□□□ -1.4
SNX1-205ENST00000559339 C14orf93Q9H972 538 aaKnown RBP6.32□□□□□ -1.4
SNX1-205ENST00000559339 PIK3C2GO75747 1445 aa6.32□□□□□ -1.4
SNX1-205ENST00000559339 PTCH1Q13635 1447 aa6.32□□□□□ -1.4
SNX1-205ENST00000559339 ALKQ9UM73 1620 aa6.32□□□□□ -1.4
SNX1-205ENST00000559339 CHD2O14647 1828 aaKnown RBP6.32□□□□□ -1.4
SNX1-205ENST00000559339 DHX57Q6P158 1386 aaKnown RBP6.31□□□□□ -1.4
SNX1-205ENST00000559339 DISP3Q9P2K9 1392 aa6.31□□□□□ -1.4
SNX1-205ENST00000559339 MYOM2P54296 1465 aa6.31□□□□□ -1.4
SNX1-205ENST00000559339 CFAP70Q5T0N1 1121 aa6.31□□□□□ -1.4
SNX1-205ENST00000559339 LRPPRCP42704 1394 aaKnown RBP6.31□□□□□ -1.4
SNX1-205ENST00000559339 ABCC11Q96J66 1382 aa6.31□□□□□ -1.4
SNX1-205ENST00000559339 ROBO2Q9HCK4 1378 aa6.31□□□□□ -1.4
SNX1-205ENST00000559339 NRXN3Q9Y4C0 1643 aa6.3□□□□□ -1.4
SNX1-205ENST00000559339 BRINP3Q76B58 766 aa6.3□□□□□ -1.4
SNX1-205ENST00000559339 WAPLQ7Z5K2 1190 aa6.3□□□□□ -1.4
SNX1-205ENST00000559339 SIRT1Q96EB6 747 aa6.3□□□□□ -1.4
SNX1-205ENST00000559339 POGKQ9P215 609 aa6.3□□□□□ -1.4
SNX1-205ENST00000559339 ADGRL3Q9HAR2 1447 aa6.3□□□□□ -1.4
SNX1-205ENST00000559339 PPLO60437 1756 aa6.29□□□□□ -1.4
SNX1-205ENST00000559339 NEUROD1Q13562 356 aa6.29□□□□□ -1.4
SNX1-205ENST00000559339 PRAG1Q86YV5 1406 aa6.29□□□□□ -1.4
SNX1-205ENST00000559339 YTHDC2Q9H6S0 1430 aaKnown RBP6.29□□□□□ -1.4
SNX1-205ENST00000559339 RNF216Q9NWF9 866 aaPredicted RBP6.29□□□□□ -1.4
SNX1-205ENST00000559339 NRXN1Q9ULB1 1477 aa6.28□□□□□ -1.4
SNX1-205ENST00000559339 XRN1Q8IZH2 1706 aaKnown RBP6.28□□□□□ -1.4
SNX1-205ENST00000559339 TECPR2O15040 1411 aa6.28□□□□□ -1.4
SNX1-205ENST00000559339 ESCO1Q5FWF5 840 aa6.28□□□□□ -1.4
SNX1-205ENST00000559339 LRRC59Q96AG4 307 aaKnown RBP6.28□□□□□ -1.4
SNX1-205ENST00000559339 PRAM1Q96QH2 718 aa6.28□□□□□ -1.4
SNX1-205ENST00000559339 TRAK1Q9UPV9 953 aa6.28□□□□□ -1.4
SNX1-205ENST00000559339 SAFB2Q14151 953 aaKnown RBP eCLIP6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms