RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 FHOD3Q2V2M9 1422 aa7.66□□□□□ -1.18
LDLR-209ENST00000558528 CD109Q6YHK3 1445 aa7.66□□□□□ -1.18
LDLR-209ENST00000558528 UACAQ9BZF9 1416 aa7.66□□□□□ -1.18
LDLR-209ENST00000558528 CFAP43Q8NDM7 1665 aa7.66□□□□□ -1.18
LDLR-209ENST00000558528 CTTNBP2Q8WZ74 1663 aa7.66□□□□□ -1.18
LDLR-209ENST00000558528 MAP3K13O43283 966 aa7.65□□□□□ -1.18
LDLR-209ENST00000558528 RAD21O60216 631 aa7.65□□□□□ -1.18
LDLR-209ENST00000558528 ZCCHC11Q5TAX3 1644 aaKnown RBP7.65□□□□□ -1.18
LDLR-209ENST00000558528 PROSER2Q86WR7 435 aaPredicted RBP7.65□□□□□ -1.18
LDLR-209ENST00000558528 CLUAP1Q96AJ1 413 aa7.65□□□□□ -1.18
LDLR-209ENST00000558528 KIF12Q96FN5 646 aa7.65□□□□□ -1.18
LDLR-209ENST00000558528 WDR7Q9Y4E6 1490 aa7.65□□□□□ -1.18
LDLR-209ENST00000558528 SAMD9Q5K651 1589 aa7.64□□□□□ -1.19
LDLR-209ENST00000558528 FYCO1Q9BQS8 1478 aa7.64□□□□□ -1.19
LDLR-209ENST00000558528 NUTM2FA1L443 756 aa7.64□□□□□ -1.19
LDLR-209ENST00000558528 FCHSD2O94868 740 aa7.64□□□□□ -1.19
LDLR-209ENST00000558528 PDE4CQ08493 712 aa7.64□□□□□ -1.19
LDLR-209ENST00000558528 SRCAPQ6ZRS2 3230 aa7.63□□□□□ -1.19
LDLR-209ENST00000558528 PTPRTO14522 1441 aa7.63□□□□□ -1.19
LDLR-209ENST00000558528 SH3D19Q5HYK7 790 aa7.63□□□□□ -1.19
LDLR-209ENST00000558528 DISP1Q96F81 1524 aa7.62□□□□□ -1.19
LDLR-209ENST00000558528 CCDC18Q5T9S5 1454 aa7.62□□□□□ -1.19
LDLR-209ENST00000558528 EMILIN3Q9NT22 766 aa7.62□□□□□ -1.19
LDLR-209ENST00000558528 PLEKHD1A6NEE1 506 aa7.61□□□□□ -1.19
LDLR-209ENST00000558528 PATL2C9JE40 543 aaKnown RBP7.61□□□□□ -1.19
LDLR-209ENST00000558528 CHADLQ6NUI6 762 aa7.61□□□□□ -1.19
LDLR-209ENST00000558528 PCGF6Q9BYE7 350 aa7.61□□□□□ -1.19
LDLR-209ENST00000558528 PREX1Q8TCU6 1659 aa7.6□□□□□ -1.19
LDLR-209ENST00000558528 MTUS2Q5JR59 1369 aa7.6□□□□□ -1.19
LDLR-209ENST00000558528 KIAA0556O60303 1618 aa7.6□□□□□ -1.19
LDLR-209ENST00000558528 ARID4BQ4LE39 1312 aaPredicted RBP7.59□□□□□ -1.19
LDLR-209ENST00000558528 TTBK1Q5TCY1 1321 aaPredicted RBP7.59□□□□□ -1.19
LDLR-209ENST00000558528 KANK4Q5T7N3 995 aaPredicted RBP7.59□□□□□ -1.19
LDLR-209ENST00000558528 GIGYF2Q6Y7W6 1299 aaKnown RBP7.59□□□□□ -1.19
LDLR-209ENST00000558528 PPARGC1BQ86YN6 1023 aaKnown RBP7.59□□□□□ -1.19
LDLR-209ENST00000558528 TTC37Q6PGP7 1564 aa7.59□□□□□ -1.2
LDLR-209ENST00000558528 PHLDB1Q86UU1 1377 aa7.59□□□□□ -1.2
LDLR-209ENST00000558528 LRRC9Q6ZRR7 1453 aa7.58□□□□□ -1.2
LDLR-209ENST00000558528 FOXK1P85037 733 aa7.58□□□□□ -1.2
LDLR-209ENST00000558528 CACNB1Q02641 598 aaPredicted RBP7.58□□□□□ -1.2
LDLR-209ENST00000558528 TMCO4Q5TGY1 634 aa7.58□□□□□ -1.2
LDLR-209ENST00000558528 FNBP4Q8N3X1 1017 aaPredicted RBP7.58□□□□□ -1.2
LDLR-209ENST00000558528 TMC2Q8TDI7 906 aa7.58□□□□□ -1.2
LDLR-209ENST00000558528 FRMPD1Q5SYB0 1578 aa7.58□□□□□ -1.2
LDLR-209ENST00000558528 GRXCR2A6NFK2 248 aa7.57□□□□□ -1.2
LDLR-209ENST00000558528 SKIV2LQ15477 1246 aaKnown RBP7.57□□□□□ -1.2
LDLR-209ENST00000558528 ARHGEF40Q8TER5 1519 aa7.57□□□□□ -1.2
LDLR-209ENST00000558528 HECW1Q76N89 1606 aa7.56□□□□□ -1.2
LDLR-209ENST00000558528 TIAM1Q13009 1591 aa7.56□□□□□ -1.2
LDLR-209ENST00000558528 UBAP1LF5GYI3 381 aa7.56□□□□□ -1.2
LDLR-209ENST00000558528 PPP1R15AO75807 674 aaPredicted RBP7.56□□□□□ -1.2
LDLR-209ENST00000558528 CLCN1P35523 988 aa7.56□□□□□ -1.2
LDLR-209ENST00000558528 DSG2Q14126 1118 aa7.56□□□□□ -1.2
LDLR-209ENST00000558528 AEBP1Q8IUX7 1158 aa7.56□□□□□ -1.2
LDLR-209ENST00000558528 ZNF777Q9ULD5 760 aaPredicted RBP7.56□□□□□ -1.2
LDLR-209ENST00000558528 SPDYE5A6NIY4 337 aa7.55□□□□□ -1.2
LDLR-209ENST00000558528 RAPGEF3O95398 923 aa7.55□□□□□ -1.2
LDLR-209ENST00000558528 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP7.55□□□□□ -1.2
LDLR-209ENST00000558528 ACIN1Q9UKV3 1341 aaKnown RBP7.54□□□□□ -1.2
LDLR-209ENST00000558528 MS4A1P11836 297 aa7.54□□□□□ -1.2
LDLR-209ENST00000558528 OSBPP22059 807 aa7.54□□□□□ -1.2
LDLR-209ENST00000558528 HSPA1LP34931 641 aa7.54□□□□□ -1.2
LDLR-209ENST00000558528 PTGER2P43116 358 aa7.54□□□□□ -1.2
LDLR-209ENST00000558528 MAP3K9P80192 1104 aa7.54□□□□□ -1.2
LDLR-209ENST00000558528 WWC1Q8IX03 1113 aa7.54□□□□□ -1.2
LDLR-209ENST00000558528 TMEM106CQ9BVX2 250 aa7.54□□□□□ -1.2
LDLR-209ENST00000558528 POGZQ7Z3K3 1410 aa7.53□□□□□ -1.2
LDLR-209ENST00000558528 SIGLEC1Q9BZZ2 1709 aa7.53□□□□□ -1.2
LDLR-209ENST00000558528 PRKAR2AP13861 404 aaKnown RBP7.53□□□□□ -1.2
LDLR-209ENST00000558528 RGS22Q8NE09 1264 aa7.53□□□□□ -1.2
LDLR-209ENST00000558528 PLSCR2Q9NRY7 297 aa7.53□□□□□ -1.2
LDLR-209ENST00000558528 CCNB3Q8WWL7 1395 aa7.53□□□□□ -1.2
LDLR-209ENST00000558528 FER1L4A9Z1Z3 1794 aa7.53□□□□□ -1.2
LDLR-209ENST00000558528 TROQ12816 1431 aaPredicted RBP7.52□□□□□ -1.2
LDLR-209ENST00000558528 RAPGEF6Q8TEU7 1601 aa7.52□□□□□ -1.2
LDLR-209ENST00000558528 FANCAO15360 1455 aa7.52□□□□□ -1.21
LDLR-209ENST00000558528 NUP153P49790 1475 aaKnown RBP7.52□□□□□ -1.21
LDLR-209ENST00000558528 NEO1Q92859 1461 aa7.52□□□□□ -1.21
LDLR-209ENST00000558528 BANK1Q8NDB2 785 aa7.52□□□□□ -1.21
LDLR-209ENST00000558528 KCNH8Q96L42 1107 aa7.52□□□□□ -1.21
LDLR-209ENST00000558528 EHBP1L1Q8N3D4 1523 aa7.52□□□□□ -1.21
LDLR-209ENST00000558528 UHRF1BP1Q6BDS2 1440 aa7.52□□□□□ -1.21
LDLR-209ENST00000558528 RRBP1Q9P2E9 1410 aaKnown RBP7.52□□□□□ -1.21
LDLR-209ENST00000558528 ABCA8O94911 1581 aa7.51□□□□□ -1.21
LDLR-209ENST00000558528 ATP10BO94823 1461 aa7.51□□□□□ -1.21
LDLR-209ENST00000558528 RSPH4AQ5TD94 716 aa7.51□□□□□ -1.21
LDLR-209ENST00000558528 RETREG2Q8NC44 543 aa7.51□□□□□ -1.21
LDLR-209ENST00000558528 GPCPD1Q9NPB8 672 aa7.51□□□□□ -1.21
LDLR-209ENST00000558528 MIA2Q96PC5 1412 aa7.51□□□□□ -1.21
LDLR-209ENST00000558528 SETD1BQ9UPS6 1966 aaKnown RBP7.5□□□□□ -1.21
LDLR-209ENST00000558528 MFAP1P55081 439 aaKnown RBP7.5□□□□□ -1.21
LDLR-209ENST00000558528 PTGDRQ13258 359 aa7.5□□□□□ -1.21
LDLR-209ENST00000558528 OXER1Q8TDS5 423 aa7.5□□□□□ -1.21
LDLR-209ENST00000558528 RGS17Q9UGC6 210 aaPredicted RBP7.5□□□□□ -1.21
LDLR-209ENST00000558528 ARHGEF12Q9NZN5 1544 aa7.49□□□□□ -1.21
LDLR-209ENST00000558528 FAM50AQ14320 339 aaKnown RBP7.49□□□□□ -1.21
LDLR-209ENST00000558528 PLPP6Q8IY26 295 aa7.49□□□□□ -1.21
LDLR-209ENST00000558528 TMUB1Q9BVT8 246 aa7.49□□□□□ -1.21
LDLR-209ENST00000558528 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.49□□□□□ -1.21
LDLR-209ENST00000558528 CFDP1Q9UEE9 299 aaPredicted RBP7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 89 ms