RNA–Protein interactions for RNA: ENST00000558319.5

SPG11-210, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SPG11, Length 6,426 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-210ENST00000558319 TDRD9Q8NDG6 1382 aaKnown RBP17.08■□□□□ 0.32
SPG11-210ENST00000558319 RB1CC1Q8TDY2 1594 aa17.07■□□□□ 0.32
SPG11-210ENST00000558319 TPM1P09493 284 aa17.07■□□□□ 0.32
SPG11-210ENST00000558319 ANO2Q9NQ90 1003 aa17.07■□□□□ 0.32
SPG11-210ENST00000558319 COG6Q9Y2V7 657 aa17.07■□□□□ 0.32
SPG11-210ENST00000558319 L3MBTL2Q969R5 705 aa17.06■□□□□ 0.32
SPG11-210ENST00000558319 IFT57Q9NWB7 429 aa17.06■□□□□ 0.32
SPG11-210ENST00000558319 RAB3GAP2Q9H2M9 1393 aa17.06■□□□□ 0.32
SPG11-210ENST00000558319 CENPQQ7L2Z9 268 aaPredicted RBP17.06■□□□□ 0.32
SPG11-210ENST00000558319 CYB5RLQ6IPT4 315 aa17.05■□□□□ 0.32
SPG11-210ENST00000558319 NOM1Q5C9Z4 860 aaKnown RBP17.05■□□□□ 0.32
SPG11-210ENST00000558319 C9orf78Q9NZ63 289 aaPredicted RBP17.05■□□□□ 0.32
SPG11-210ENST00000558319 TTC5Q8N0Z6 440 aa17.04■□□□□ 0.32
SPG11-210ENST00000558319 HMOX1P09601 288 aa17.04■□□□□ 0.32
SPG11-210ENST00000558319 IL27Q8NEV9 243 aa17.04■□□□□ 0.32
SPG11-210ENST00000558319 MAP7D2Q96T17 732 aa17.04■□□□□ 0.32
SPG11-210ENST00000558319 SKIDA1Q1XH10 827 aa17.03■□□□□ 0.32
SPG11-210ENST00000558319 FANCIQ9NVI1 1328 aa17.03■□□□□ 0.32
SPG11-210ENST00000558319 TPM2P07951 284 aa17.03■□□□□ 0.32
SPG11-210ENST00000558319 CHMP4CQ96CF2 233 aa17.03■□□□□ 0.32
SPG11-210ENST00000558319 PODXL2Q9NZ53 605 aa17.03■□□□□ 0.32
SPG11-210ENST00000558319 BRPF3Q9ULD4 1205 aa17.03■□□□□ 0.32
SPG11-210ENST00000558319 CCDC27Q2M243 656 aa17.03■□□□□ 0.32
SPG11-210ENST00000558319 NFXL1Q6ZNB6 911 aa17.02■□□□□ 0.32
SPG11-210ENST00000558319 MAPK8IP2Q13387 824 aaPredicted RBP17.02■□□□□ 0.32
SPG11-210ENST00000558319 TEFQ10587 303 aa17.02■□□□□ 0.31
SPG11-210ENST00000558319 COG3Q96JB2 828 aa17.01■□□□□ 0.31
SPG11-210ENST00000558319 RUFY1Q96T51 708 aa17.01■□□□□ 0.31
SPG11-210ENST00000558319 KIF3AQ9Y496 699 aa17.01■□□□□ 0.31
SPG11-210ENST00000558319 CECR2Q9BXF3 1484 aa17.01■□□□□ 0.31
SPG11-210ENST00000558319 PLCD4Q9BRC7 762 aa17.01■□□□□ 0.31
SPG11-210ENST00000558319 BICD2Q8TD16 824 aa17.01■□□□□ 0.31
SPG11-210ENST00000558319 NOL10Q9BSC4 688 aaKnown RBP17.01■□□□□ 0.31
SPG11-210ENST00000558319 EFCAB2Q5VUJ9 269 aa17.01■□□□□ 0.31
SPG11-210ENST00000558319 MNS1Q8NEH6 495 aa17.01■□□□□ 0.31
SPG11-210ENST00000558319 ST20-MTHFSA0A0A6YYL1 179 aa17■□□□□ 0.31
SPG11-210ENST00000558319 DHX37Q8IY37 1157 aaKnown RBP17■□□□□ 0.31
SPG11-210ENST00000558319 ATP6V1DQ9Y5K8 247 aa17■□□□□ 0.31
SPG11-210ENST00000558319 PSME1Q06323 249 aa17■□□□□ 0.31
SPG11-210ENST00000558319 DIAPH3Q9NSV4 1193 aa17■□□□□ 0.31
SPG11-210ENST00000558319 NFKBIBQ15653 356 aa16.99■□□□□ 0.31
SPG11-210ENST00000558319 RRP1P56182 461 aaKnown RBP16.99■□□□□ 0.31
SPG11-210ENST00000558319 SYNE3Q6ZMZ3 975 aa16.99■□□□□ 0.31
SPG11-210ENST00000558319 FHAD1B1AJZ9 1412 aa16.98■□□□□ 0.31
SPG11-210ENST00000558319 EIF3AQ14152 1382 aaKnown RBP16.98■□□□□ 0.31
SPG11-210ENST00000558319 TTLL5Q6EMB2 1281 aa16.98■□□□□ 0.31
SPG11-210ENST00000558319 AK7Q96M32 723 aa16.98■□□□□ 0.31
SPG11-210ENST00000558319 H0YHG0 523 aa16.98■□□□□ 0.31
SPG11-210ENST00000558319 NAP1L1P55209 391 aaKnown RBP16.98■□□□□ 0.31
SPG11-210ENST00000558319 NEUROD6Q96NK8 337 aa16.97■□□□□ 0.31
SPG11-210ENST00000558319 RNF214Q8ND24 703 aa16.97■□□□□ 0.31
SPG11-210ENST00000558319 IBSPP21815 317 aaPredicted RBP16.97■□□□□ 0.31
SPG11-210ENST00000558319 ARGLU1Q9NWB6 273 aaPredicted RBP16.96■□□□□ 0.31
SPG11-210ENST00000558319 CHMP5Q9NZZ3 219 aa16.96■□□□□ 0.31
SPG11-210ENST00000558319 IPO7O95373 1038 aaKnown RBP16.96■□□□□ 0.31
SPG11-210ENST00000558319 IFIT2P09913 472 aaKnown RBP16.95■□□□□ 0.3
SPG11-210ENST00000558319 SASS6Q6UVJ0 657 aa16.95■□□□□ 0.3
SPG11-210ENST00000558319 VPS37CA5D8V6 355 aaPredicted RBP16.95■□□□□ 0.3
SPG11-210ENST00000558319 APAF1O14727 1248 aa16.94■□□□□ 0.3
SPG11-210ENST00000558319 TRIM29Q14134 588 aa16.94■□□□□ 0.3
SPG11-210ENST00000558319 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.94■□□□□ 0.31e-8■■■■■ 115.4
SPG11-210ENST00000558319 NASPP49321 788 aaPredicted RBP16.94■□□□□ 0.3
SPG11-210ENST00000558319 HSP90AB3PQ58FF7 597 aa16.94■□□□□ 0.3
SPG11-210ENST00000558319 AMOTL1Q8IY63 956 aa16.94■□□□□ 0.3
SPG11-210ENST00000558319 HSP90B2PQ58FF3 399 aa16.94■□□□□ 0.3
SPG11-210ENST00000558319 RDXP35241 583 aaKnown RBP16.93■□□□□ 0.3
SPG11-210ENST00000558319 ANKRD30AQ9BXX3 1397 aa16.93■□□□□ 0.3
SPG11-210ENST00000558319 IKQ13123 557 aaPredicted RBP16.93■□□□□ 0.3
SPG11-210ENST00000558319 PDE3BQ13370 1112 aa16.93■□□□□ 0.3
SPG11-210ENST00000558319 FHOD3Q2V2M9 1422 aa16.93■□□□□ 0.3
SPG11-210ENST00000558319 FKBP5Q13451 457 aaPredicted RBP16.93■□□□□ 0.3
SPG11-210ENST00000558319 CCDC43Q96MW1 224 aaKnown RBP16.93■□□□□ 0.3
SPG11-210ENST00000558319 ZFYVE27Q5T4F4 411 aa16.92■□□□□ 0.3
SPG11-210ENST00000558319 RBM33Q96EV2 1170 aaKnown RBP16.92■□□□□ 0.3
SPG11-210ENST00000558319 LMOD3Q0VAK6 560 aa16.92■□□□□ 0.3
SPG11-210ENST00000558319 PDILTQ8N807 584 aa16.92■□□□□ 0.3
SPG11-210ENST00000558319 CPLX1O14810 134 aa16.92■□□□□ 0.3
SPG11-210ENST00000558319 RIPK4P57078 832 aa16.92■□□□□ 0.3
SPG11-210ENST00000558319 NEXNQ0ZGT2 675 aa16.91■□□□□ 0.3
SPG11-210ENST00000558319 WASHC4Q2M389 1173 aa16.91■□□□□ 0.3
SPG11-210ENST00000558319 NLRP13Q86W25 1043 aa16.91■□□□□ 0.3
SPG11-210ENST00000558319 CCDC39Q9UFE4 941 aa16.91■□□□□ 0.3
SPG11-210ENST00000558319 CARMIL2Q6F5E8 1435 aa16.9■□□□□ 0.3
SPG11-210ENST00000558319 CWC15Q9P013 229 aaKnown RBP16.9■□□□□ 0.3
SPG11-210ENST00000558319 ATP2B1P20020 1258 aa16.9■□□□□ 0.3
SPG11-210ENST00000558319 ACBD3Q9H3P7 528 aa16.9■□□□□ 0.3
SPG11-210ENST00000558319 NUTM2BA6NNL0 878 aaPredicted RBP16.9■□□□□ 0.3
SPG11-210ENST00000558319 NUTM2EB1AL46 878 aaPredicted RBP16.9■□□□□ 0.3
SPG11-210ENST00000558319 NUTM2AQ8IVF1 878 aaPredicted RBP16.9■□□□□ 0.3
SPG11-210ENST00000558319 PRKCSHP14314 528 aaPredicted RBP16.89■□□□□ 0.29
SPG11-210ENST00000558319 ANKRD20A12PQ8NF67 263 aa16.89■□□□□ 0.29
SPG11-210ENST00000558319 CCDC66A2RUB6 948 aa16.88■□□□□ 0.29
SPG11-210ENST00000558319 RIC3Q7Z5B4 369 aa16.88■□□□□ 0.29
SPG11-210ENST00000558319 CCDC191Q8NCU4 936 aa16.88■□□□□ 0.29
SPG11-210ENST00000558319 STRN4Q9NRL3 753 aa16.88■□□□□ 0.29
SPG11-210ENST00000558319 MPNDQ8N594 471 aa16.88■□□□□ 0.29
SPG11-210ENST00000558319 CAGE1Q8TC20 777 aa16.88■□□□□ 0.29
SPG11-210ENST00000558319 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.87■□□□□ 0.29
SPG11-210ENST00000558319 LNPKQ9C0E8 428 aa16.87■□□□□ 0.29
SPG11-210ENST00000558319 TSPYL4Q9UJ04 414 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms