RNA–Protein interactions for RNA: ENST00000558040.5

SNX1-203, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 774 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-203ENST00000558040 NBPF8Q3BBV2 869 aa24.02■■□□□ 1.44
SNX1-203ENST00000558040 UBR1Q8IWV7 1749 aa24.01■■□□□ 1.43
SNX1-203ENST00000558040 VGFO15240 615 aaPredicted RBP23.99■■□□□ 1.43
SNX1-203ENST00000558040 RALGAPBQ86X10 1494 aa23.99■■□□□ 1.43
SNX1-203ENST00000558040 SETD1BQ9UPS6 1966 aaKnown RBP23.98■■□□□ 1.43
SNX1-203ENST00000558040 ZFYVE9O95405 1425 aa23.98■■□□□ 1.43
SNX1-203ENST00000558040 CEP170BQ9Y4F5 1589 aaPredicted RBP23.98■■□□□ 1.43
SNX1-203ENST00000558040 HDGFP51858 240 aaKnown RBP23.97■■□□□ 1.43
SNX1-203ENST00000558040 NRXN1Q9ULB1 1477 aa23.97■■□□□ 1.43
SNX1-203ENST00000558040 ZNF142P52746 1687 aaPredicted RBP23.96■■□□□ 1.43
SNX1-203ENST00000558040 RIMS2Q9UQ26 1411 aa23.96■■□□□ 1.43
SNX1-203ENST00000558040 KDM4FA0A1W2PPD8 638 aa23.96■■□□□ 1.43
SNX1-203ENST00000558040 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.95■■□□□ 1.42
SNX1-203ENST00000558040 TRPM1Q7Z4N2 1603 aa23.95■■□□□ 1.42
SNX1-203ENST00000558040 ADGRF5Q8IZF2 1346 aa23.94■■□□□ 1.42
SNX1-203ENST00000558040 THEMISQ8N1K5 641 aaPredicted RBP23.94■■□□□ 1.42
SNX1-203ENST00000558040 TMEM2Q9UHN6 1383 aa23.93■■□□□ 1.42
SNX1-203ENST00000558040 KIAA1210Q9ULL0 1709 aa23.92■■□□□ 1.42
SNX1-203ENST00000558040 PIK3C2GO75747 1445 aa23.92■■□□□ 1.42
SNX1-203ENST00000558040 ROCK2O75116 1388 aaKnown RBP23.91■■□□□ 1.42
SNX1-203ENST00000558040 SLIT1O75093 1534 aa23.89■■□□□ 1.42
SNX1-203ENST00000558040 ARHGAP23Q9P227 1491 aa23.88■■□□□ 1.41
SNX1-203ENST00000558040 NUTM2DQ5VT03 806 aaPredicted RBP23.88■■□□□ 1.41
SNX1-203ENST00000558040 EID1Q9Y6B2 187 aa23.87■■□□□ 1.41
SNX1-203ENST00000558040 LAMC1P11047 1609 aa23.87■■□□□ 1.41
SNX1-203ENST00000558040 GPRASP1Q5JY77 1395 aa23.87■■□□□ 1.41
SNX1-203ENST00000558040 CARD11Q9BXL7 1154 aa23.86■■□□□ 1.41
SNX1-203ENST00000558040 EIF4G2P78344 907 aaKnown RBP eCLIP23.83■■□□□ 1.41
SNX1-203ENST00000558040 C14orf93Q9H972 538 aaKnown RBP23.83■■□□□ 1.41
SNX1-203ENST00000558040 SETBP1Q9Y6X0 1596 aa23.82■■□□□ 1.4
SNX1-203ENST00000558040 NBPF1Q3BBV0 1214 aa23.82■■□□□ 1.4
SNX1-203ENST00000558040 CFAP70Q5T0N1 1121 aa23.82■■□□□ 1.4
SNX1-203ENST00000558040 TXNDC2Q86VQ3 553 aa23.81■■□□□ 1.4
SNX1-203ENST00000558040 SCAF11Q99590 1463 aaKnown RBP23.8■■□□□ 1.4
SNX1-203ENST00000558040 USP47Q96K76 1375 aa23.79■■□□□ 1.4
SNX1-203ENST00000558040 PLEKHG1Q9ULL1 1385 aa23.79■■□□□ 1.4
SNX1-203ENST00000558040 ZNF316A6NFI3 1004 aaPredicted RBP23.78■■□□□ 1.4
SNX1-203ENST00000558040 LTKP29376 864 aa23.77■■□□□ 1.4
SNX1-203ENST00000558040 ALKQ9UM73 1620 aa23.77■■□□□ 1.4
SNX1-203ENST00000558040 HSPA5P11021 654 aaKnown RBP23.76■■□□□ 1.39
SNX1-203ENST00000558040 ANKLE2Q86XL3 938 aa23.76■■□□□ 1.39
SNX1-203ENST00000558040 BCANQ96GW7 911 aa23.75■■□□□ 1.39
SNX1-203ENST00000558040 ADGRB1O14514 1584 aa23.74■■□□□ 1.39
SNX1-203ENST00000558040 NRXN3Q9Y4C0 1643 aa23.73■■□□□ 1.39
SNX1-203ENST00000558040 IQGAP1P46940 1657 aa23.73■■□□□ 1.39
SNX1-203ENST00000558040 EIF3AQ14152 1382 aaKnown RBP23.73■■□□□ 1.39
SNX1-203ENST00000558040 SENP3Q9H4L4 574 aaPredicted RBP23.7■■□□□ 1.38
SNX1-203ENST00000558040 SETD1AO15047 1707 aaKnown RBP23.7■■□□□ 1.38
SNX1-203ENST00000558040 DIP2AQ14689 1571 aa23.69■■□□□ 1.38
SNX1-203ENST00000558040 ASXL1Q8IXJ9 1541 aa23.69■■□□□ 1.38
SNX1-203ENST00000558040 POLR1AO95602 1720 aaPredicted RBP23.68■■□□□ 1.38
SNX1-203ENST00000558040 TMEM132EQ6IEE7 984 aa23.68■■□□□ 1.38
SNX1-203ENST00000558040 LMTK3Q96Q04 1460 aa23.68■■□□□ 1.38
SNX1-203ENST00000558040 ADAMTS13Q76LX8 1427 aa23.67■■□□□ 1.38
SNX1-203ENST00000558040 HIRIP3Q9BW71 556 aaPredicted RBP23.66■■□□□ 1.38
SNX1-203ENST00000558040 MED14O60244 1454 aa23.65■■□□□ 1.38
SNX1-203ENST00000558040 YTHDC2Q9H6S0 1430 aaKnown RBP23.65■■□□□ 1.38
SNX1-203ENST00000558040 ST20-MTHFSA0A0A6YYL1 179 aa23.64■■□□□ 1.37
SNX1-203ENST00000558040 TBX22Q9Y458 520 aa23.64■■□□□ 1.37
SNX1-203ENST00000558040 NPHP4O75161 1426 aaPredicted RBP23.63■■□□□ 1.37
SNX1-203ENST00000558040 LRPPRCP42704 1394 aaKnown RBP23.63■■□□□ 1.37
SNX1-203ENST00000558040 TRAK1Q9UPV9 953 aa23.62■■□□□ 1.37
SNX1-203ENST00000558040 METP08581 1390 aa23.62■■□□□ 1.37
SNX1-203ENST00000558040 SLC26A8Q96RN1 970 aa23.6■■□□□ 1.37
SNX1-203ENST00000558040 NCKAP5LQ9HCH0 1330 aa23.59■■□□□ 1.37
SNX1-203ENST00000558040 SLC24A1O60721 1099 aa23.59■■□□□ 1.37
SNX1-203ENST00000558040 STK26Q9P289 416 aa23.59■■□□□ 1.37
SNX1-203ENST00000558040 ARHGEF28Q8N1W1 1705 aaKnown RBP23.59■■□□□ 1.37
SNX1-203ENST00000558040 DLC1Q96QB1 1528 aa23.59■■□□□ 1.37
SNX1-203ENST00000558040 ABCC11Q96J66 1382 aa23.58■■□□□ 1.37
SNX1-203ENST00000558040 PIK3R4Q99570 1358 aa23.58■■□□□ 1.37
SNX1-203ENST00000558040 HSPA2P54652 639 aa23.58■■□□□ 1.37
SNX1-203ENST00000558040 CENPJQ9HC77 1338 aaPredicted RBP23.58■■□□□ 1.36
SNX1-203ENST00000558040 KNDC1Q76NI1 1749 aa23.57■■□□□ 1.36
SNX1-203ENST00000558040 TECPR2O15040 1411 aa23.56■■□□□ 1.36
SNX1-203ENST00000558040 SBNO2Q9Y2G9 1366 aa23.54■■□□□ 1.36
SNX1-203ENST00000558040 TESK2Q96S53 571 aa23.54■■□□□ 1.36
SNX1-203ENST00000558040 TMF1P82094 1093 aa23.53■■□□□ 1.36
SNX1-203ENST00000558040 QRICH2Q9H0J4 1663 aa23.53■■□□□ 1.36
SNX1-203ENST00000558040 CPS1P31327 1500 aa23.53■■□□□ 1.36
SNX1-203ENST00000558040 SIRT1Q96EB6 747 aa23.52■■□□□ 1.36
SNX1-203ENST00000558040 POGKQ9P215 609 aa23.52■■□□□ 1.36
SNX1-203ENST00000558040 FAM135BQ49AJ0 1406 aa23.51■■□□□ 1.35
SNX1-203ENST00000558040 PRAM1Q96QH2 718 aa23.5■■□□□ 1.35
SNX1-203ENST00000558040 CCDC7Q96M83 1385 aa23.5■■□□□ 1.35
SNX1-203ENST00000558040 PTPRUQ92729 1446 aa23.5■■□□□ 1.35
SNX1-203ENST00000558040 XRN1Q8IZH2 1706 aaKnown RBP23.48■■□□□ 1.35
SNX1-203ENST00000558040 CDCA8Q53HL2 280 aa23.48■■□□□ 1.35
SNX1-203ENST00000558040 AMOTL2Q9Y2J4 779 aa23.48■■□□□ 1.35
SNX1-203ENST00000558040 WASHC2AQ641Q2 1341 aa23.48■■□□□ 1.35
SNX1-203ENST00000558040 PTCH1Q13635 1447 aa23.48■■□□□ 1.35
SNX1-203ENST00000558040 KIF7Q2M1P5 1343 aa23.47■■□□□ 1.35
SNX1-203ENST00000558040 C11orf95C9JLR9 678 aaPredicted RBP23.46■■□□□ 1.35
SNX1-203ENST00000558040 STRCQ7RTU9 1775 aa23.46■■□□□ 1.35
SNX1-203ENST00000558040 CHD2O14647 1828 aaKnown RBP23.45■■□□□ 1.34
SNX1-203ENST00000558040 DISP3Q9P2K9 1392 aa23.45■■□□□ 1.34
SNX1-203ENST00000558040 ROBO2Q9HCK4 1378 aa23.44■■□□□ 1.34
SNX1-203ENST00000558040 SAFB2Q14151 953 aaKnown RBP eCLIP23.43■■□□□ 1.34
SNX1-203ENST00000558040 WAPLQ7Z5K2 1190 aa23.42■■□□□ 1.34
SNX1-203ENST00000558040 NWD1Q149M9 1564 aa23.42■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms