RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 STAG3Q9UJ98 1225 aa12.94□□□□□ -0.34
CCDC88C-214ENST00000557507 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.93□□□□□ -0.34
CCDC88C-214ENST00000557507 SHPRHQ149N8 1683 aa12.93□□□□□ -0.34
CCDC88C-214ENST00000557507 ZFYVE9O95405 1425 aa12.93□□□□□ -0.34
CCDC88C-214ENST00000557507 PROSER2Q86WR7 435 aaPredicted RBP12.92□□□□□ -0.34
CCDC88C-214ENST00000557507 LRP6O75581 1613 aa12.91□□□□□ -0.34
CCDC88C-214ENST00000557507 ADGRL2O95490 1459 aa12.91□□□□□ -0.34
CCDC88C-214ENST00000557507 E9PCH4 1651 aa12.91□□□□□ -0.34
CCDC88C-214ENST00000557507 MSH6P52701 1360 aa12.91□□□□□ -0.34
CCDC88C-214ENST00000557507 ANKRD30AQ9BXX3 1397 aa12.91□□□□□ -0.34
CCDC88C-214ENST00000557507 LOC105371045A0A1W2PR82 267 aa12.9□□□□□ -0.34
CCDC88C-214ENST00000557507 RPRD2Q5VT52 1461 aaKnown RBP12.9□□□□□ -0.34
CCDC88C-214ENST00000557507 UNC13BO14795 1591 aa12.9□□□□□ -0.35
CCDC88C-214ENST00000557507 AHDC1Q5TGY3 1603 aaPredicted RBP12.89□□□□□ -0.35
CCDC88C-214ENST00000557507 JCADQ9P266 1359 aa12.89□□□□□ -0.35
CCDC88C-214ENST00000557507 CHIC2Q9UKJ5 165 aa12.88□□□□□ -0.35
CCDC88C-214ENST00000557507 PLEKHG1Q9ULL1 1385 aa12.88□□□□□ -0.35
CCDC88C-214ENST00000557507 DIP2AQ14689 1571 aa12.88□□□□□ -0.35
CCDC88C-214ENST00000557507 RIMS2Q9UQ26 1411 aa12.88□□□□□ -0.35
CCDC88C-214ENST00000557507 SLAIN2Q9P270 581 aa12.86□□□□□ -0.35
CCDC88C-214ENST00000557507 ADAMTS13Q76LX8 1427 aa12.85□□□□□ -0.35
CCDC88C-214ENST00000557507 NHSL1Q5SYE7 1610 aa12.84□□□□□ -0.35
CCDC88C-214ENST00000557507 IQGAP3Q86VI3 1631 aa12.84□□□□□ -0.35
CCDC88C-214ENST00000557507 NRXN3Q9Y4C0 1643 aa12.84□□□□□ -0.35
CCDC88C-214ENST00000557507 BCANQ96GW7 911 aa12.84□□□□□ -0.35
CCDC88C-214ENST00000557507 SLC52A1Q9NWF4 448 aa12.84□□□□□ -0.35
CCDC88C-214ENST00000557507 ANKRD50Q9ULJ7 1429 aa12.84□□□□□ -0.35
CCDC88C-214ENST00000557507 XRN1Q8IZH2 1706 aaKnown RBP12.84□□□□□ -0.35
CCDC88C-214ENST00000557507 NCOA3Q9Y6Q9 1424 aa12.82□□□□□ -0.36
CCDC88C-214ENST00000557507 TRPM2O94759 1503 aa12.82□□□□□ -0.36
CCDC88C-214ENST00000557507 PPP1R15AO75807 674 aaPredicted RBP12.81□□□□□ -0.36
CCDC88C-214ENST00000557507 SPHKAPQ2M3C7 1700 aa12.81□□□□□ -0.36
CCDC88C-214ENST00000557507 SPATA31A6Q5VVP1 1343 aa12.8□□□□□ -0.36
CCDC88C-214ENST00000557507 NALCNQ8IZF0 1738 aa12.79□□□□□ -0.36
CCDC88C-214ENST00000557507 PTPRUQ92729 1446 aa12.79□□□□□ -0.36
CCDC88C-214ENST00000557507 ASXL1Q8IXJ9 1541 aa12.78□□□□□ -0.36
CCDC88C-214ENST00000557507 APLP2Q06481 763 aa12.78□□□□□ -0.36
CCDC88C-214ENST00000557507 NUTM2DQ5VT03 806 aaPredicted RBP12.78□□□□□ -0.36
CCDC88C-214ENST00000557507 TBX22Q9Y458 520 aa12.78□□□□□ -0.36
CCDC88C-214ENST00000557507 MEX3CQ5U5Q3 659 aaKnown RBP12.77□□□□□ -0.37
CCDC88C-214ENST00000557507 C14orf37Q86TY3 774 aa12.77□□□□□ -0.37
CCDC88C-214ENST00000557507 UPF1Q92900 1129 aaKnown RBP eCLIP12.77□□□□□ -0.37
CCDC88C-214ENST00000557507 TRIM52Q96A61 297 aa12.77□□□□□ -0.37
CCDC88C-214ENST00000557507 PIK3R4Q99570 1358 aa12.77□□□□□ -0.37
CCDC88C-214ENST00000557507 SETBP1Q9Y6X0 1596 aa12.77□□□□□ -0.37
CCDC88C-214ENST00000557507 CHGAP10645 457 aaKnown RBP12.75□□□□□ -0.37
CCDC88C-214ENST00000557507 DCCP43146 1447 aa12.75□□□□□ -0.37
CCDC88C-214ENST00000557507 FAM50AQ14320 339 aaKnown RBP12.75□□□□□ -0.37
CCDC88C-214ENST00000557507 ZNF772Q68DY9 489 aaPredicted RBP12.75□□□□□ -0.37
CCDC88C-214ENST00000557507 CADPS2Q86UW7 1296 aa12.75□□□□□ -0.37
CCDC88C-214ENST00000557507 CDK12Q9NYV4 1490 aaPredicted RBP12.75□□□□□ -0.37
CCDC88C-214ENST00000557507 MST1RQ04912 1400 aa12.74□□□□□ -0.37
CCDC88C-214ENST00000557507 BRINP3Q76B58 766 aa12.74□□□□□ -0.37
CCDC88C-214ENST00000557507 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.74□□□□□ -0.37
CCDC88C-214ENST00000557507 C19orf44Q9H6X5 657 aa12.74□□□□□ -0.37
CCDC88C-214ENST00000557507 ATF3P18847 181 aa12.73□□□□□ -0.37
CCDC88C-214ENST00000557507 HDGFP51858 240 aaKnown RBP12.73□□□□□ -0.37
CCDC88C-214ENST00000557507 SETD5Q9C0A6 1442 aa12.72□□□□□ -0.37
CCDC88C-214ENST00000557507 KIF1BO60333 1816 aa12.72□□□□□ -0.37
CCDC88C-214ENST00000557507 LAMC1P11047 1609 aa12.72□□□□□ -0.37
CCDC88C-214ENST00000557507 RGS12O14924 1447 aa12.71□□□□□ -0.37
CCDC88C-214ENST00000557507 CLTCL1P53675 1640 aa12.71□□□□□ -0.37
CCDC88C-214ENST00000557507 AFF2P51816 1311 aa12.7□□□□□ -0.38
CCDC88C-214ENST00000557507 NUTM2BA6NNL0 878 aaPredicted RBP12.7□□□□□ -0.38
CCDC88C-214ENST00000557507 NUTM2EB1AL46 878 aaPredicted RBP12.7□□□□□ -0.38
CCDC88C-214ENST00000557507 RXRBP28702 533 aa12.7□□□□□ -0.38
CCDC88C-214ENST00000557507 NUTM2AQ8IVF1 878 aaPredicted RBP12.7□□□□□ -0.38
CCDC88C-214ENST00000557507 AMOTL2Q9Y2J4 779 aa12.7□□□□□ -0.38
CCDC88C-214ENST00000557507 NEXMIFQ5QGS0 1516 aa12.7□□□□□ -0.38
CCDC88C-214ENST00000557507 MARF1Q9Y4F3 1742 aaKnown RBP12.69□□□□□ -0.38
CCDC88C-214ENST00000557507 ADGRL3Q9HAR2 1447 aa12.69□□□□□ -0.38
CCDC88C-214ENST00000557507 ROCK1Q13464 1354 aa12.69□□□□□ -0.38
CCDC88C-214ENST00000557507 METP08581 1390 aa12.68□□□□□ -0.38
CCDC88C-214ENST00000557507 PNPLA6Q8IY17 1366 aa12.68□□□□□ -0.38
CCDC88C-214ENST00000557507 NUP155O75694 1391 aa12.66□□□□□ -0.38
CCDC88C-214ENST00000557507 COL22A1Q8NFW1 1626 aaPredicted RBP12.66□□□□□ -0.38
CCDC88C-214ENST00000557507 DDX17Q92841 729 aaKnown RBP12.65□□□□□ -0.38
CCDC88C-214ENST00000557507 PPLO60437 1756 aa12.64□□□□□ -0.39
CCDC88C-214ENST00000557507 C8orf37Q96NL8 207 aa12.64□□□□□ -0.39
CCDC88C-214ENST00000557507 SRCAPQ6ZRS2 3230 aa12.63□□□□□ -0.39
CCDC88C-214ENST00000557507 C1orf167Q5SNV9 1468 aa12.62□□□□□ -0.39
CCDC88C-214ENST00000557507 EP400Q96L91 3159 aa12.62□□□□□ -0.39
CCDC88C-214ENST00000557507 RBM6P78332 1123 aaKnown RBP12.61□□□□□ -0.39
CCDC88C-214ENST00000557507 LRRC59Q96AG4 307 aaKnown RBP12.61□□□□□ -0.39
CCDC88C-214ENST00000557507 PTCH1Q13635 1447 aa12.61□□□□□ -0.39
CCDC88C-214ENST00000557507 QTRT2Q9H974 415 aaKnown RBP12.6□□□□□ -0.39
CCDC88C-214ENST00000557507 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.59□□□□□ -0.39
CCDC88C-214ENST00000557507 ZNF326Q5BKZ1 582 aaKnown RBP12.59□□□□□ -0.39
CCDC88C-214ENST00000557507 BRWD3Q6RI45 1802 aa12.59□□□□□ -0.39
CCDC88C-214ENST00000557507 ADAMTS2O95450 1211 aa12.58□□□□□ -0.4
CCDC88C-214ENST00000557507 CDC42BPGQ6DT37 1551 aa12.58□□□□□ -0.4
CCDC88C-214ENST00000557507 PRAG1Q86YV5 1406 aa12.58□□□□□ -0.4
CCDC88C-214ENST00000557507 ROBO2Q9HCK4 1378 aa12.57□□□□□ -0.4
CCDC88C-214ENST00000557507 ITGAEP38570 1179 aa12.57□□□□□ -0.4
CCDC88C-214ENST00000557507 ATAD2Q6PL18 1390 aa12.56□□□□□ -0.4
CCDC88C-214ENST00000557507 ATRNO75882 1429 aa12.56□□□□□ -0.4
CCDC88C-214ENST00000557507 NGLY1Q96IV0 654 aa12.56□□□□□ -0.4
CCDC88C-214ENST00000557507 MYOM2P54296 1465 aa12.56□□□□□ -0.4
CCDC88C-214ENST00000557507 IFT172Q9UG01 1749 aa12.56□□□□□ -0.4
CCDC88C-214ENST00000557507 SOS2Q07890 1332 aaPredicted RBP12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms